mRNA_E-fasciculatus_F_contig12085.1629.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 5.090e-149 Identity = 225/241 (93.36%), Postives = 230/241 (95.44%), Query Frame = 2
Query: 296 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAEMLTAAAGAAAAHAESMAWSSLYDGWVDSMSSXXXXXXS-------VGGGDWRTSSAL 997
MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGP VVLDDRA KIR+ASN+SAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVV+RG+IPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAE LTAAAGAAAAHAESMAW+SLYDGWVDSMSSXXXXXX VGGGDWRTSSAL
Sbjct: 1 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESMAWTSLYDGWVDSMSSXXXXXXXXXXXXXXVGGGDWRTSSAL 241
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA) HSP 1 Score: 149 bits (376), Expect = 8.820e-39 Identity = 86/198 (43.43%), Postives = 110/198 (55.56%), Query Frame = 2
Query: 296 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFE------DIDVWTCHFSPRSFKVKSEVVVAQPADARS-ELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRC--GGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAEMLTAA 862
+ G H LP D +V YA P ER GP V LD ++ +A + D+ VW HFSPR+ V +E++ A P DA + EL N FVR RI +V RG +P+VHKV+AAQRA AL V++ADDG C G F Q C+ GS PP+GWA D PW +VR+P VLML+E A +L AA
Sbjct: 1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK) HSP 1 Score: 142 bits (359), Expect = 4.500e-35 Identity = 99/288 (34.38%), Postives = 139/288 (48.26%), Query Frame = 2
Query: 2 GSPVSWYHVMSRPTGDNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAE-NAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSA-FEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGN-IPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPP---EGWAALDMPRPWLDVRVPVVLMLREDAE 847
G P++ YH+M T ++ W+ +G P D ++ + V HL+PG AY F+V A+ G WSAPS P + E + K + +G G + + + + + + HGP+V L D ++ + + WTC +SP++F V +E V A P A L N +R R+ +V RG +P+V K L AQ AGALGVIV DDGRC +F Q CV G+D E WA D P PW VRVPVVL+L DAE
Sbjct: 16 GEPITGYHLMKLHTDEHTHDDWEFLGTF---FPNFDPNMG-----GLCHTVPHLLPGTAYSFKVAARTAAGDGLWSAPSPPARTPLPQLEVDPKGKVTGGTGHVYGRGWDPITHTSFKKDMFEAPLHLETHSSDKKTSYDQHGPVVTLHDHEARLEVRRGGGGPAVAVAAWTCAWSPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGRGGGVPLVTKALRAQAAGALGVIVVDDGRCR-AFDQRCVRGADLAARGELWARGDRPGPWRGVRVPVVLVLAGDAE 294
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA) HSP 1 Score: 143 bits (361), Expect = 4.450e-33 Identity = 98/297 (33.00%), Postives = 139/297 (46.80%), Query Frame = 2
Query: 2 GSPVSWYHVMSRPTGDNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFEDIDVWTCHFSPRSFKVKSEVVVAQPA-----------DARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAEML 853
G+ V + V R + + W +G P VS +A +++HL+P Y+FR+ A N +G + AP + A SG + H D A E A EVHGP+V L D + L + + VW H+SP+++KV +EV+V P R+ L N V++RI ++ERG +P+VHK AQ AGAL VIV DDG+C F QLC G+D +G+A LD+ PW +R+PVVLMLR DA+ L
Sbjct: 383 GADVKGFIVQRRHVQEEMHDDWVTLGSFPIHWVDHVVSDDGATEHRLAFELDHLLPNCDYEFRIAAYNKIGVA---APGTGSRLRTNPVSRAGEEVVGGSGHRSMPLHHFRELDEDFHTDSAAEVREHLKALHSSTFFEVHGPVVTLSDLLQTVTLEKPGTGLT-LPVWVSHWSPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMERGGVPLVHKAALAQDAGALAVIVTDDGKCT-EFDQLCCPGADKKFGDGFAKLDLAAPWEKIRIPVVLMLRADADKL 674
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.900e-29 Identity = 101/287 (35.19%), Postives = 141/287 (49.13%), Query Frame = 2
Query: 47 DNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVGTSPWS----------APSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFE-DIDVWTCHFSPRSFKVKSEVVVAQPADA-RSELENGR--FVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPP----EGWAALDMPRPWLDVRVPVVLMLREDAEML 853
D+ +W VG A + V+ + S+ V+HL+PG YQFRV A N G SPWS AP + ++ +A SG H H+ + N+T + T G IV L D A + + + VW +SP SF V++++ +A+PA A R+E G V +R+++VERG P+V KVL AQ+AGALGVI+ DDGRC F Q CV GSD +G+AA D P W VR+P VL+L +D E+L
Sbjct: 595 DHADGQWVNVGKVQAFSA---VTEDEALKNSMTTLVDHLLPGSMYQFRVSAVNSEGRSPWSVYTAALETVKAPKFRPGAGSIDSGDAPVLHGHGSGAHRIHDAHKTGNMTAEATT---------------------GAIVNLHDHAHSLLVDGGDGGTNLQLAVWAAAWSPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRCE-KFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: G5AEH8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AEH8_PHYSP) HSP 1 Score: 132 bits (331), Expect = 5.440e-29 Identity = 93/273 (34.07%), Postives = 139/273 (50.92%), Query Frame = 2
Query: 140 VAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVS---------VTYAGETEPPPGAGFDPFE---------REVHGPIVVLDDRAGKIRLASNHSAFE-------DIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAEMLTAAAGAA 874
++ KV L PG AY FRV A N +G WS S VV+ A R + A ++L +P + V V +++ DP ++ P VVL D +++L S++++ + + W+ H+SPR F V +E+V+A P DA L N VR+R+++ RG +P V K+ AQRAGALG+I+AD DG CGG F Q CV G+D EG+AA + W + ++P VL+L++ A+ L GAA
Sbjct: 655 LSTKVCGLFPGAAYTFRVAAMNVLGAGHWSHRSSRVVI-------APRRRLTSLESGAKSQYLAVPTLKGVGDPGYSVVSGVDILSQSDLSALIAQDPHRILRATGVQVQDATLPRVVLSDVNEQVQLLSSNASEQGTVGVERSFEAWSSHYSPRLFDVSAELVLADPPDASQPLRNAHAVRDRVLLAVRGGVPFVFKLHFAQRAGALGLIIADADGVCGGGFDQSCVPGADKRRGEGFAAQERHTLWQEAQIPCVLVLQDTAQELLERLGAA 920
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A8K1C2W5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2W5_PYTOL) HSP 1 Score: 129 bits (325), Expect = 3.150e-28 Identity = 89/237 (37.55%), Postives = 120/237 (50.63%), Query Frame = 2
Query: 158 HLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSG-----FHAGHEHL--RLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLRE 838
+LVPG +Q RV A N +G PWSA S+P + + + + + G + L +L N T VT A A D ++ P +VL D K +A DVW+ HFSPR F+V SE+ A P DA S L N V++R+V++ RGN+P V KV AQ AGALGVI+ D +G C F Q CV G+D EG+ D W +R+P VL L+E
Sbjct: 678 NLVPGTTFQVRVAAVNIIGVGPWSARSDPATLSPYDKSSRLNEIPVLYGIGDPRYSRASRFLTQQLNNATLALVTEAQR------ASTDTYQGVR--PRIVLSDIQEKAIVAVGADTELQFDVWSGHFSPRKFQVSSEIARADPFDASSPLVNAADVKDRVVIIARGNVPFVFKVYHAQLAGALGVIIGDFNGTCHNRFDQRCVPGADRTRGEGFGLHDRHVLWQRIRIPFVLALKE 906
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: W2Q4L8_PHYPN (Fibronectin type-III domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q4L8_PHYPN) HSP 1 Score: 128 bits (322), Expect = 7.900e-28 Identity = 96/262 (36.64%), Postives = 139/262 (53.05%), Query Frame = 2
Query: 140 VAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVS-VTYAGETEPPPGAGFDPFE------REVHGPI---VVLDDRAGKIRLASNHS----AFE-DIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDP--PEGWAALDMPRPWLDVRVPVVLMLREDAEMLTAAAGA 871
++ K+ L PG AY FRV A N +G WS S V + A +++RD S + + P T V+ V+ +++ DP +V VVL D ++++ SN+S A E + WT H+SPR F V +E+++A P DA L+N VR+R+++ RG +P+V KV AQRAGALG+I+AD +G C G F Q CV GSD EG+AA + W +P VL+L+E A+ L A GA
Sbjct: 708 LSTKICGLFPGAAYTFRVAAMNVLGAGHWSHRSSRVAI-APPRRLSENRDNSKVFVIPTLKGVGNPGYTAVTGVSILSQSDLSALIAQDPHRILRASGAQVEDDTLTHVVLSDIREQVQIVSNNSEGVIAVERTFEAWTGHYSPRLFDVSAELILADPPDASRPLKNVHAVRDRVLLAVRGGVPLVFKVHHAQRAGALGLIIADANGHCAGGFDQSCVPGSDKIRGEGFAAQERHVLWDQAHIPCVLVLKEAAQELLARFGA 968
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A8J2X4D2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4D2_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.770e-27 Identity = 86/244 (35.25%), Postives = 119/244 (48.77%), Query Frame = 2
Query: 176 AYQFRVCAQNDVGTSPWSAPSEPVVVLATE-AENAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAG---------FDPFEREVHGPIVVLD-------DRAGKIRLASNHSAFEDIDV--WTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEG--WAALDMPRPWLDVRVPVVLMLREDA 844
+Y+F V N +G +PWS P+ P E A + H F H H H+ + T G+ + FD VHGP+V + D + +A D W CH+SPR K +E+V A P DA S +N +R R+V+V+RG P+ K L AQRAGALGV++AD+G+C + Q CV G+D G WA LD+ RPW V +PVVL+L + A
Sbjct: 491 SYEFSVAPYNRLGVAPWSGPTAPCATNNEEKAVSYGHGAFDR---HTRH-HIPTDDELVQIATEEGKKLYEEASHYVRKHLDDLFDEHAHSVHGPLVSIGGSLTASLDVYDSLHNYRRPNARPDYSAQAWLCHWSPRGHKAVAELVAADPLDACSTHKNAAPLRGRVVLVKRGQCPLATKALLAQRAGALGVVIADNGKCT-ALDQYCVPGADRSRGEAWARLDLQRPWAGVHIPVVLVLADSA 729
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A833T7F8_PHYIN (Fibronectin type-III domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T7F8_PHYIN) HSP 1 Score: 124 bits (311), Expect = 2.010e-26 Identity = 94/267 (35.21%), Postives = 131/267 (49.06%), Query Frame = 2
Query: 140 VAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVS---------VTYAGETEPPPGAGFDPF----------EREVHGPIVVLDDRAGKIRLASNHS----AFED-IDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAEMLTA 859
++ +V L PG AY FRV A N +G WS S + + HR + + + L +P + V V ++E DP E E +V+ D R L+SN+S A E + WT H+SPR F V +E+++A P DA L N VR+RI++ RG +P V KV AQRAGALG+++AD +G C G F Q CV GSD EG+AA + W R+P VL+L+E A+ L A
Sbjct: 719 LSTRVCGLFPGAAYTFRVAAMNVLGAGHWSHRSSRAEI------SRPHRRHTSTENRDKAQVLAIPTLKGVGDSGYTAVSGVNILSQSELSALIAQDPHRILRASGVQAEDETLTHVVLSDSREQVQILSSNNSEGVVAVEHTFEAWTGHYSPRMFDVSAELILADPPDASQPLRNSHAVRDRILLAVRGGVPFVFKVHHAQRAGALGLVLADANGYCAGGFDQSCVPGSDKRRGEGFAAREKHILWERARIPCVLVLKEAAQQLLA 979 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12085.1629.1 >prot_E-fasciculatus_F_contig12085.1629.1 ID=prot_E-fasciculatus_F_contig12085.1629.1|Name=mRNA_E-fasciculatus_F_contig12085.1629.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=324bp MSRPTGDNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAback to top mRNA from alignment at E-fasciculatus_F_contig12085:1110..4043- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12085.1629.1 ID=mRNA_E-fasciculatus_F_contig12085.1629.1|Name=mRNA_E-fasciculatus_F_contig12085.1629.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12085:1110..4043- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12085:1110..4043- >mRNA_E-fasciculatus_F_contig12085.1629.1 ID=mRNA_E-fasciculatus_F_contig12085.1629.1|Name=mRNA_E-fasciculatus_F_contig12085.1629.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12085:1110..4043- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |