mRNA_E-fasciculatus_F_contig12085.1629.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12085.1629.1
Unique NamemRNA_E-fasciculatus_F_contig12085.1629.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 5.090e-149
Identity = 225/241 (93.36%), Postives = 230/241 (95.44%), Query Frame = 2
Query:  296 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAEMLTAAAGAAAAHAESMAWSSLYDGWVDSMSSXXXXXXS-------VGGGDWRTSSAL 997
            MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGP VVLDDRA KIR+ASN+SAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVV+RG+IPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAE LTAAAGAAAAHAESMAW+SLYDGWVDSMSSXXXXXX        VGGGDWRTSSAL
Sbjct:    1 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESMAWTSLYDGWVDSMSSXXXXXXXXXXXXXXVGGGDWRTSSAL 241          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 8.820e-39
Identity = 86/198 (43.43%), Postives = 110/198 (55.56%), Query Frame = 2
Query:  296 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFE------DIDVWTCHFSPRSFKVKSEVVVAQPADARS-ELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRC--GGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAEMLTAA 862
            + G H       LP   D +V YA     P        ER   GP V LD    ++ +A +           D+ VW  HFSPR+  V +E++ A P DA + EL N  FVR RI +V RG +P+VHKV+AAQRA AL V++ADDG C   G F Q C+ GS PP+GWA  D   PW +VR+P VLML+E A +L AA
Sbjct:    1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK)

HSP 1 Score: 142 bits (359), Expect = 4.500e-35
Identity = 99/288 (34.38%), Postives = 139/288 (48.26%), Query Frame = 2
Query:    2 GSPVSWYHVMSRPTGDNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAE-NAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSA-FEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGN-IPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPP---EGWAALDMPRPWLDVRVPVVLMLREDAE 847
            G P++ YH+M   T ++    W+ +G      P  D ++       +   V HL+PG AY F+V A+   G   WSAPS P      + E + K +    +G   G     + + +     +         +       + HGP+V L D   ++ +          +  WTC +SP++F V +E V A P  A   L N   +R R+ +V RG  +P+V K L AQ AGALGVIV DDGRC  +F Q CV G+D     E WA  D P PW  VRVPVVL+L  DAE
Sbjct:   16 GEPITGYHLMKLHTDEHTHDDWEFLGTF---FPNFDPNMG-----GLCHTVPHLLPGTAYSFKVAARTAAGDGLWSAPSPPARTPLPQLEVDPKGKVTGGTGHVYGRGWDPITHTSFKKDMFEAPLHLETHSSDKKTSYDQHGPVVTLHDHEARLEVRRGGGGPAVAVAAWTCAWSPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGRGGGVPLVTKALRAQAAGALGVIVVDDGRCR-AFDQRCVRGADLAARGELWARGDRPGPWRGVRVPVVLVLAGDAE 294          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.450e-33
Identity = 98/297 (33.00%), Postives = 139/297 (46.80%), Query Frame = 2
Query:    2 GSPVSWYHVMSRPTGDNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFEDIDVWTCHFSPRSFKVKSEVVVAQPA-----------DARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAEML 853
            G+ V  + V  R   + +   W  +G  P       VS        +A +++HL+P   Y+FR+ A N +G +   AP     +       A       SG  +   H       D     A E      A       EVHGP+V L D    + L    +    + VW  H+SP+++KV +EV+V  P              R+ L N   V++RI ++ERG +P+VHK   AQ AGAL VIV DDG+C   F QLC  G+D    +G+A LD+  PW  +R+PVVLMLR DA+ L
Sbjct:  383 GADVKGFIVQRRHVQEEMHDDWVTLGSFPIHWVDHVVSDDGATEHRLAFELDHLLPNCDYEFRIAAYNKIGVA---APGTGSRLRTNPVSRAGEEVVGGSGHRSMPLHHFRELDEDFHTDSAAEVREHLKALHSSTFFEVHGPVVTLSDLLQTVTLEKPGTGLT-LPVWVSHWSPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMERGGVPLVHKAALAQDAGALAVIVTDDGKCT-EFDQLCCPGADKKFGDGFAKLDLAAPWEKIRIPVVLMLRADADKL 674          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.900e-29
Identity = 101/287 (35.19%), Postives = 141/287 (49.13%), Query Frame = 2
Query:   47 DNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVGTSPWS----------APSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFE-DIDVWTCHFSPRSFKVKSEVVVAQPADA-RSELENGR--FVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPP----EGWAALDMPRPWLDVRVPVVLMLREDAEML 853
            D+   +W  VG   A +    V+  +    S+   V+HL+PG  YQFRV A N  G SPWS          AP       + ++ +A       SG H  H+  +  N+T  + T                     G IV L D A  + +          + VW   +SP SF V++++ +A+PA A R+E   G    V +R+++VERG  P+V KVL AQ+AGALGVI+ DDGRC   F Q CV GSD      +G+AA D P  W  VR+P VL+L +D E+L
Sbjct:  595 DHADGQWVNVGKVQAFSA---VTEDEALKNSMTTLVDHLLPGSMYQFRVSAVNSEGRSPWSVYTAALETVKAPKFRPGAGSIDSGDAPVLHGHGSGAHRIHDAHKTGNMTAEATT---------------------GAIVNLHDHAHSLLVDGGDGGTNLQLAVWAAAWSPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRCE-KFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: G5AEH8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AEH8_PHYSP)

HSP 1 Score: 132 bits (331), Expect = 5.440e-29
Identity = 93/273 (34.07%), Postives = 139/273 (50.92%), Query Frame = 2
Query:  140 VAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVS---------VTYAGETEPPPGAGFDPFE---------REVHGPIVVLDDRAGKIRLASNHSAFE-------DIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAEMLTAAAGAA 874
            ++ KV  L PG AY FRV A N +G   WS  S  VV+       A  R  +     A  ++L +P +  V          V    +++       DP           ++   P VVL D   +++L S++++ +         + W+ H+SPR F V +E+V+A P DA   L N   VR+R+++  RG +P V K+  AQRAGALG+I+AD DG CGG F Q CV G+D    EG+AA +    W + ++P VL+L++ A+ L    GAA
Sbjct:  655 LSTKVCGLFPGAAYTFRVAAMNVLGAGHWSHRSSRVVI-------APRRRLTSLESGAKSQYLAVPTLKGVGDPGYSVVSGVDILSQSDLSALIAQDPHRILRATGVQVQDATLPRVVLSDVNEQVQLLSSNASEQGTVGVERSFEAWSSHYSPRLFDVSAELVLADPPDASQPLRNAHAVRDRVLLAVRGGVPFVFKLHFAQRAGALGLIIADADGVCGGGFDQSCVPGADKRRGEGFAAQERHTLWQEAQIPCVLVLQDTAQELLERLGAA 920          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A8K1C2W5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2W5_PYTOL)

HSP 1 Score: 129 bits (325), Expect = 3.150e-28
Identity = 89/237 (37.55%), Postives = 120/237 (50.63%), Query Frame = 2
Query:  158 HLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSG-----FHAGHEHL--RLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASNHSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLRE 838
            +LVPG  +Q RV A N +G  PWSA S+P  +   +  +  +    + G     +      L  +L N T   VT A        A  D ++     P +VL D   K  +A         DVW+ HFSPR F+V SE+  A P DA S L N   V++R+V++ RGN+P V KV  AQ AGALGVI+ D +G C   F Q CV G+D    EG+   D    W  +R+P VL L+E
Sbjct:  678 NLVPGTTFQVRVAAVNIIGVGPWSARSDPATLSPYDKSSRLNEIPVLYGIGDPRYSRASRFLTQQLNNATLALVTEAQR------ASTDTYQGVR--PRIVLSDIQEKAIVAVGADTELQFDVWSGHFSPRKFQVSSEIARADPFDASSPLVNAADVKDRVVIIARGNVPFVFKVYHAQLAGALGVIIGDFNGTCHNRFDQRCVPGADRTRGEGFGLHDRHVLWQRIRIPFVLALKE 906          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: W2Q4L8_PHYPN (Fibronectin type-III domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q4L8_PHYPN)

HSP 1 Score: 128 bits (322), Expect = 7.900e-28
Identity = 96/262 (36.64%), Postives = 139/262 (53.05%), Query Frame = 2
Query:  140 VAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVS-VTYAGETEPPPGAGFDPFE------REVHGPI---VVLDDRAGKIRLASNHS----AFE-DIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDP--PEGWAALDMPRPWLDVRVPVVLMLREDAEMLTAAAGA 871
            ++ K+  L PG AY FRV A N +G   WS  S  V + A     +++RD S        + +  P  T V+ V+   +++       DP         +V       VVL D   ++++ SN+S    A E   + WT H+SPR F V +E+++A P DA   L+N   VR+R+++  RG +P+V KV  AQRAGALG+I+AD +G C G F Q CV GSD    EG+AA +    W    +P VL+L+E A+ L A  GA
Sbjct:  708 LSTKICGLFPGAAYTFRVAAMNVLGAGHWSHRSSRVAI-APPRRLSENRDNSKVFVIPTLKGVGNPGYTAVTGVSILSQSDLSALIAQDPHRILRASGAQVEDDTLTHVVLSDIREQVQIVSNNSEGVIAVERTFEAWTGHYSPRLFDVSAELILADPPDASRPLKNVHAVRDRVLLAVRGGVPLVFKVHHAQRAGALGLIIADANGHCAGGFDQSCVPGSDKIRGEGFAAQERHVLWDQAHIPCVLVLKEAAQELLARFGA 968          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A8J2X4D2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4D2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.770e-27
Identity = 86/244 (35.25%), Postives = 119/244 (48.77%), Query Frame = 2
Query:  176 AYQFRVCAQNDVGTSPWSAPSEPVVVLATE-AENAKHRDFSMSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAG---------FDPFEREVHGPIVVLD-------DRAGKIRLASNHSAFEDIDV--WTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEG--WAALDMPRPWLDVRVPVVLMLREDA 844
            +Y+F V   N +G +PWS P+ P      E A +  H  F     H  H H+   +      T  G+      +          FD     VHGP+V +        D    +      +A  D     W CH+SPR  K  +E+V A P DA S  +N   +R R+V+V+RG  P+  K L AQRAGALGV++AD+G+C  +  Q CV G+D   G  WA LD+ RPW  V +PVVL+L + A
Sbjct:  491 SYEFSVAPYNRLGVAPWSGPTAPCATNNEEKAVSYGHGAFDR---HTRH-HIPTDDELVQIATEEGKKLYEEASHYVRKHLDDLFDEHAHSVHGPLVSIGGSLTASLDVYDSLHNYRRPNARPDYSAQAWLCHWSPRGHKAVAELVAADPLDACSTHKNAAPLRGRVVLVKRGQCPLATKALLAQRAGALGVVIADNGKCT-ALDQYCVPGADRSRGEAWARLDLQRPWAGVHIPVVLVLADSA 729          
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Match: A0A833T7F8_PHYIN (Fibronectin type-III domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T7F8_PHYIN)

HSP 1 Score: 124 bits (311), Expect = 2.010e-26
Identity = 94/267 (35.21%), Postives = 131/267 (49.06%), Query Frame = 2
Query:  140 VAVKVEHLVPGVAYQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHLRLPNVTDVS---------VTYAGETEPPPGAGFDPF----------EREVHGPIVVLDDRAGKIRLASNHS----AFED-IDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVERGNIPIVHKVLAAQRAGALGVIVAD-DGRCGGSFGQLCVYGSDPP--EGWAALDMPRPWLDVRVPVVLMLREDAEMLTA 859
            ++ +V  L PG AY FRV A N +G   WS  S    +      +  HR  + +      + L +P +  V          V    ++E       DP           E E    +V+ D R     L+SN+S    A E   + WT H+SPR F V +E+++A P DA   L N   VR+RI++  RG +P V KV  AQRAGALG+++AD +G C G F Q CV GSD    EG+AA +    W   R+P VL+L+E A+ L A
Sbjct:  719 LSTRVCGLFPGAAYTFRVAAMNVLGAGHWSHRSSRAEI------SRPHRRHTSTENRDKAQVLAIPTLKGVGDSGYTAVSGVNILSQSELSALIAQDPHRILRASGVQAEDETLTHVVLSDSREQVQILSSNNSEGVVAVEHTFEAWTGHYSPRMFDVSAELILADPPDASQPLRNSHAVRDRILLAVRGGVPFVFKVHHAQRAGALGLVLADANGYCAGGFDQSCVPGSDKRRGEGFAAREKHILWERARIPCVLVLKEAAQQLLA 979          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12085.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI37_ECTSI5.090e-14993.36PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CBI4_9STRA8.820e-3943.43PA domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S3UWA2_HETAK4.500e-3534.38Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2WLH8_9STRA4.450e-3333.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XPP5_9STRA2.900e-2935.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
G5AEH8_PHYSP5.440e-2934.07Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A8K1C2W5_PYTOL3.150e-2837.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2Q4L8_PHYPN7.900e-2836.64Fibronectin type-III domain-containing protein n=1... [more]
A0A8J2X4D2_9STRA2.770e-2735.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A833T7F8_PHYIN2.010e-2635.21Fibronectin type-III domain-containing protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12085contigE-fasciculatus_F_contig12085:1110..4043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.2
Seed ortholog evalue6.7e-120
Seed eggNOG ortholog2880.D8LI37
EggNOG OGs29K29@1,2RTB6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1484
Cds size972
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927718.2176647-UTR-E-fasciculatus_F_contig12085:1109..15931622927718.2176647-UTR-E-fasciculatus_F_contig12085:1109..1593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12085 1110..1593 -
1695995664.2074008-UTR-E-fasciculatus_F_contig12085:1109..15931695995664.2074008-UTR-E-fasciculatus_F_contig12085:1109..1593Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12085 1110..1593 -
1622927718.299123-UTR-E-fasciculatus_F_contig12085:4015..40431622927718.299123-UTR-E-fasciculatus_F_contig12085:4015..4043Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12085 4016..4043 -
1695995664.2711987-UTR-E-fasciculatus_F_contig12085:4015..40431695995664.2711987-UTR-E-fasciculatus_F_contig12085:4015..4043Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12085 4016..4043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927718.2330763-CDS-E-fasciculatus_F_contig12085:1593..19351622927718.2330763-CDS-E-fasciculatus_F_contig12085:1593..1935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 1594..1935 -
1695995664.2204533-CDS-E-fasciculatus_F_contig12085:1593..19351695995664.2204533-CDS-E-fasciculatus_F_contig12085:1593..1935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 1594..1935 -
1622927718.2501438-CDS-E-fasciculatus_F_contig12085:2197..23331622927718.2501438-CDS-E-fasciculatus_F_contig12085:2197..2333Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 2198..2333 -
1695995664.2289467-CDS-E-fasciculatus_F_contig12085:2197..23331695995664.2289467-CDS-E-fasciculatus_F_contig12085:2197..2333Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 2198..2333 -
1622927718.265078-CDS-E-fasciculatus_F_contig12085:2646..28181622927718.265078-CDS-E-fasciculatus_F_contig12085:2646..2818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 2647..2818 -
1695995664.237876-CDS-E-fasciculatus_F_contig12085:2646..28181695995664.237876-CDS-E-fasciculatus_F_contig12085:2646..2818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 2647..2818 -
1622927718.2794156-CDS-E-fasciculatus_F_contig12085:3095..32321622927718.2794156-CDS-E-fasciculatus_F_contig12085:3095..3232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 3096..3232 -
1695995664.2490885-CDS-E-fasciculatus_F_contig12085:3095..32321695995664.2490885-CDS-E-fasciculatus_F_contig12085:3095..3232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 3096..3232 -
1622927718.2892964-CDS-E-fasciculatus_F_contig12085:3830..40151622927718.2892964-CDS-E-fasciculatus_F_contig12085:3830..4015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 3831..4015 -
1695995664.2611072-CDS-E-fasciculatus_F_contig12085:3830..40151695995664.2611072-CDS-E-fasciculatus_F_contig12085:3830..4015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12085 3831..4015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12085.1629.1prot_E-fasciculatus_F_contig12085.1629.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12085 1594..4015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12085.1629.1

>prot_E-fasciculatus_F_contig12085.1629.1 ID=prot_E-fasciculatus_F_contig12085.1629.1|Name=mRNA_E-fasciculatus_F_contig12085.1629.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=324bp
MSRPTGDNVLSKWQAVGMAPAPAPKLDVSVHDTEPQSVAVKVEHLVPGVA
YQFRVCAQNDVGTSPWSAPSEPVVVLATEAENAKHRDFSMSGFHAGHEHL
RLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPIVVLDDRAGKIRLASN
HSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVV
ERGNIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAA
LDMPRPWLDVRVPVVLMLREDAEMLTAAAGAAAAHAESMAWSSLYDGWVD
SMSSSSSSASSVGGGDWRTSSAL*
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mRNA from alignment at E-fasciculatus_F_contig12085:1110..4043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12085.1629.1 ID=mRNA_E-fasciculatus_F_contig12085.1629.1|Name=mRNA_E-fasciculatus_F_contig12085.1629.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12085:1110..4043- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTCTCCGGTTTCGTGGTATCACGTCATGTCCCGACCGACCGGGGACA ACGTCCTGAGCAAGTGGCAGGCGGTGGGCATGGCGCCGGCACCGGCGCCA AAGCTAGACGTGTCCGTTCACGACACGGAGCCGCAATCGGTGGCGGTGAA AGTGGAACACCTCGTGCCGGGAGTCGCGTATCAGTTTCGCGTTTGCGCCC AGAACGACGTTGGGTGAGGATAAAACCAAGGCGAAGCACGCTGTAGGTGT AGAACCCCGAAAAGAAAACATCAGCACCACACCGTTGTTTCTGTTCTCGA CTCAACCTGTTTGCCCAACGTGTGTGTGTTTCCATGCAATGTTAATGCGT TGGTCTGTACGCAGTTTGTCTCCGCGCATGCGGTTCTCAGGCATGCGACT CCCCACACCGAGCAAGTTCATTCACCAGAAGGCGGAATAAATCATTTTGA ACGGTTTTTGTTTGTTGTTTCTCACATTAGCTCTGAAAAAAAAGAAAGAT GGGGAGCGGTGTGAGGTGTTGACTAGCCCATAAGGCTCTTGCCGGTTTGA ACCAATGAGCGCCCAAGCCGTGTGGCTGGTGGTAGTTTAGTAGCAGCACC TGCCATCCGCAGCAACGAAAAATAAATTCCATCGTATTCCTCCAATACCT CGTGTGAATAACTTAAACATGGCGAGTAAAAATTGTATCTCGTACCACGA TAACTCAAATTCGGCCGATTGAAAGGAAGTCAAGCCATTGCCCAAAGTAT CTTTCCGGGTTCCTATTGGGATTTTCTTCGATGATTTGTGTTTGGTCTTG TCTACGAACAGGACCTCTCCCTGGAGCGCCCCATCCGAGCCCGTTGTGGT ACTCGCAACCGAGGCGGAAAATGCCAAACACAGGGATTTCTCCATGAGCG GTTTCCACGCTGGCCACGAGCACCTCCGTCTCCCGAACGTGACTGACGGT GGGTACAGTAGGAGGGCAAGGAAGTGCTTGCCGATGGCATTTGGGGCAAG ATTTCCTTCAGTTTTTTTTTCTTTGTTCCCTGTTGGTGTGTGAGAGCAAA AATTGGGATCCGAGGGTATACCTGAAAAGAAACTCTCGTCCATGCAATGC CGCAGAAACGGAACGTGGGGCCTTATGCGTCTAACCCTAACCCCACCCCC TCGACCGCCCTCCGCAACAACACCGATCTATCCACTCCCTAATGTCTTCA TACTCTGTCCTGCTTCACAAAACAGTGTCGGTGACCTATGCCGGGGAGAC TGAGCCGCCCCCTGGAGCGGGATTCGACCCCTTCGAGAGGGAGGTGCACG GGCCAATCGTGGTTCTCGACGACCGAGCGGGCAAGATCCGCTTGGCCAGC AACCACTCCGCGTTTGAAGACATCGACGTGTGGACATGCCACTTTAGGTA CGTACGTAAGAGATCCCTCGCACCGACAAGCGCCACCTTGGAAACAAATG ACAACAAGTTTGTACCACAATCTTACTACTGTAGCGTTGTTGTACATGGC CATGATCTACCATGAACACGTCATGCTGTGTACCTCGCTACAGCATAGGT GGGGCTAGAGTCAGGGTTAGGATGACTACATACCGCACCCAAACCCACCC CTCACCCTGCGCCACTTCGTCCCTCGCCCCGCCTAGGACATCATGGGCAA GAAGCATTTGAAGCATTTGTATTGAACTCTTCCACTACCTCGACCTCATG CTTTCCCCAGCCCCCGATCCTTCAAGGTAAAATCCGAGGTGGTCGTTGCG CAGCCTGCCGACGCGCGGAGCGAACTGGAGAACGGGCGCTTCGTTCGAAA CCGCATAGTCGTCGTGGAGCGGGGGAACATCCCGATTGTACACAAGGCAA GAACGTACCCTTCAGAAGAACGGAATGTTTTCCATCAGCTTTAGTTATCG GACCATCTTGTCTTGCGCGTCAACGCTGTTAGTTAGCAGATGGCTACCCG CACGGTGTCGCCTGCTCTACTCTTCTCATACGCAGATGATGCAGATAAAA CTAAGTTCCAAATGGCAAGTCTTGGGGTAAGACATTCTAACCAAGCCGCC CACAACAGCACAAAGAAGACAGCTCAAAACGCCACACCAACGCACGCGAC ACAAACAGGTGCTAGCCGCGCAGCGCGCCGGAGCCCTCGGAGTTATCGTT GCCGACGACGGGAGGTGCGGCGGCAGCTTCGGACAGCTGTGCGTGTACGG CAGCGACCCTCCCGAGGGCTGGGCGGCCCTCGACATGCCCCGGCCCTGGC TCGACGTCCGGGTGCCGGTGGTTCTCATGCTCCGCGAGGACGCGGAGATG TTGACCGCGGCGGCCGGGGCGGCAGCGGCGCACGCCGAGTCCATGGCGTG GAGCTCGTTGTACGACGGGTGGGTTGACTCGATGAGTTCTTCATCGTCTT CGGCGTCTTCGGTGGGAGGCGGGGATTGGAGAACGAGTAGCGCACTCTAA TGTTTTTCTGCTTGCATTCCCAGGGGGATGGTGGTTGACGAACCAACGAG GGTCGCGGGTAGAGTCCATGCCGGACCGATATTGTATGCAGTTCGTCGTT TTTCTTTCTCAGGTTAGAGGGGACGGGGATTCCAGGGTGGGAACATACTG CGGTGGTGTCGAATCTCTTCCCCCGGCTGATTGATAGAGACGTTCGTCTT TCCGTTGTCGACTCAGGTGACTCCCTTGTCCCCCTTCAAAAACATTTCAA GAAACGATTGGGAAACCCTGATGGTTCCTAAACTTGCCAAACCGTTTCCG TGGTGATATTGGTCTCAAGTGCGTGCGTTGTACAGCAGTGGTAGCGACGC TTACACCCATGATTGGTGGGGAGATGATGCTGCGGGGAATGCTACCGCCG TTGTTTCGTCTGAACCAACGTACGCATCGCAAATGGCGGCATAGTCTACG ATGCTGCTGATCTCGACGTGTTCGAAGAAAAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12085:1110..4043-

>mRNA_E-fasciculatus_F_contig12085.1629.1 ID=mRNA_E-fasciculatus_F_contig12085.1629.1|Name=mRNA_E-fasciculatus_F_contig12085.1629.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12085:1110..4043- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCGACCGACCGGGGACAACGTCCTGAGCAAGTGGCAGGCGGTGGG
CATGGCGCCGGCACCGGCGCCAAAGCTAGACGTGTCCGTTCACGACACGG
AGCCGCAATCGGTGGCGGTGAAAGTGGAACACCTCGTGCCGGGAGTCGCG
TATCAGTTTCGCGTTTGCGCCCAGAACGACGTTGGATGTCCCGACCGACC
GGGGACAACGTCCTGAGCAAGTGGCAGGCGGTGGGCATGGCGCCGGCACC
GGCGCCAAAGCTAGACGTGTCCGTTCACGACACGGAGCCGCAATCGGTGG
CGGTGAAAGTGGAACACCTCGTGCCGGGAGTCGCGTATCAGTTTCGCGTT
TGCGCCCAGAACGACGTTGGGACCTCTCCCTGGAGCGCCCCATCCGAGCC
CGTTGTGGTACTCGCAACCGAGGCGGAAAATGCCAAACACAGGGATTTCT
CCATGAGCGGTTTCCACGCTGGCCACGAGCACCTCCGTCTCCCGAACGTG
ACTGACGGACCTCTCCCTGGAGCGCCCCATCCGAGCCCGTTGTGGTACTC
GCAACCGAGGCGGAAAATGCCAAACACAGGGATTTCTCCATGAGCGGTTT
CCACGCTGGCCACGAGCACCTCCGTCTCCCGAACGTGACTGACGTGTCGG
TGACCTATGCCGGGGAGACTGAGCCGCCCCCTGGAGCGGGATTCGACCCC
TTCGAGAGGGAGGTGCACGGGCCAATCGTGGTTCTCGACGACCGAGCGGG
CAAGATCCGCTTGGCCAGCAACCACTCCGCGTTTGAAGACATCGACGTGT
GGACATGCCACTTTAGTGTCGGTGACCTATGCCGGGGAGACTGAGCCGCC
CCCTGGAGCGGGATTCGACCCCTTCGAGAGGGAGGTGCACGGGCCAATCG
TGGTTCTCGACGACCGAGCGGGCAAGATCCGCTTGGCCAGCAACCACTCC
GCGTTTGAAGACATCGACGTGTGGACATGCCACTTTAGCCCCCGATCCTT
CAAGGTAAAATCCGAGGTGGTCGTTGCGCAGCCTGCCGACGCGCGGAGCG
AACTGGAGAACGGGCGCTTCGTTCGAAACCGCATAGTCGTCGTGGAGCGG
GGGAACATCCCGATTGTACACAAGCCCCCGATCCTTCAAGGTAAAATCCG
AGGTGGTCGTTGCGCAGCCTGCCGACGCGCGGAGCGAACTGGAGAACGGG
CGCTTCGTTCGAAACCGCATAGTCGTCGTGGAGCGGGGGAACATCCCGAT
TGTACACAAGGTGCTAGCCGCGCAGCGCGCCGGAGCCCTCGGAGTTATCG
TTGCCGACGACGGGAGGTGCGGCGGCAGCTTCGGACAGCTGTGCGTGTAC
GGCAGCGACCCTCCCGAGGGCTGGGCGGCCCTCGACATGCCCCGGCCCTG
GCTCGACGTCCGGGTGCCGGTGGTTCTCATGCTCCGCGAGGACGCGGAGA
TGTTGACCGCGGCGGCCGGGGCGGCAGCGGCGCACGCCGAGTCCATGGCG
TGGAGCTCGTTGTACGACGGGTGGGTTGACTCGATGAGTTCTTCATCGTC
TTCGGCGTCTTCGGTGGGAGGCGGGGATTGGAGAACGAGTAGCGCACTCT
AAGTGCTAGCCGCGCAGCGCGCCGGAGCCCTCGGAGTTATCGTTGCCGAC
GACGGGAGGTGCGGCGGCAGCTTCGGACAGCTGTGCGTGTACGGCAGCGA
CCCTCCCGAGGGCTGGGCGGCCCTCGACATGCCCCGGCCCTGGCTCGACG
TCCGGGTGCCGGTGGTTCTCATGCTCCGCGAGGACGCGGAGATGTTGACC
GCGGCGGCCGGGGCGGCAGCGGCGCACGCCGAGTCCATGGCGTGGAGCTC
GTTGTACGACGGGTGGGTTGACTCGATGAGTTCTTCATCGTCTTCGGCGT
CTTCGGTGGGAGGCGGGGATTGGAGAACGAGTAGCGCACTCTAA
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