mRNA_E-fasciculatus_F_contig12067.1614.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12067.1614.1
Unique NamemRNA_E-fasciculatus_F_contig12067.1614.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: D7FVG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.600e-28
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   13 MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGLMSNNLQG 186
            MAQTDR ALLALY+ATGGPAWTRN NWDT SPISQW+GVTVI DRVVKL LM NN+QG
Sbjct:    1 MAQTDRAALLALYHATGGPAWTRNYNWDTDSPISQWYGVTVIGDRVVKLNLMCNNVQG 58          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.720e-15
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    4 FSKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDD-RVVKLGLMSNNLQG 186
            F KMAQTDR AL+ALYNATGG  W  N NW+T++ +SQW+ V V    RVVKL L +NNLQG
Sbjct:  122 FYKMAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQG 183          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.620e-15
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    4 FSKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTV-IDDRVVKLGLMSNNLQG 186
            F  MAQTDR AL+ALYNATGG  W  N NW T++ +SQWHGV V    RVVKL L  NNL+G
Sbjct:   68 FYTMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRG 129          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A0S1SH81_9FLAO (Uncharacterized protein n=2 Tax=Sediminicola sp. YIK13 TaxID=1453352 RepID=A0A0S1SH81_9FLAO)

HSP 1 Score: 75.9 bits (185), Expect = 6.110e-15
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 IFSKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGLMSNNLQGIL 192
            + +++ Q DR AL+ALYN+T G  WT+   WD   P+S+W+GVTV++D+VV++ L  NNLQG+L
Sbjct:    7 VLAEVRQDDREALVALYNSTNGDEWTKT--WDLNQPVSEWYGVTVVNDKVVEINLFRNNLQGVL 68          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A6H5JSF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.740e-14
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   13 MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDD-RVVKLGLMSNNLQGI 189
            MAQTDR AL A YNATGGP W  N+NW+  +  S+W G+   D  RVV+L L SNNLQGI
Sbjct:   53 MAQTDREALGAFYNATGGPNWEHNNNWNADADPSEWLGIETNDQGRVVRLSLGSNNLQGI 112          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.860e-14
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 SKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVID-DRVVKLGLMSNNLQG 186
            S    TDR AL+AL+NATGG  W +N  W+T +P+ QW+GV V D  RVVKL L  NNL+G
Sbjct:    6 STKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKG 66          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A3B7C0B4_9FLAO (Ig-like domain-containing protein n=2 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=A0A3B7C0B4_9FLAO)

HSP 1 Score: 75.1 bits (183), Expect = 2.960e-14
Identity = 29/62 (46.77%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   10 KMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGLMSNNLQGILS 195
            +++++++ AL+ LYN+T GP WT N NW T +P+  W+GVTV++ +V+ L L++NNL GIL+
Sbjct: 2104 RVSESEKQALIDLYNSTNGPNWTNNTNWLTDAPVCDWYGVTVVEGKVISLSLVNNNLDGILT 2165          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 5.240e-14
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   13 MAQTDRVALLALYNATGGPAWTRNDNWD-TTSPISQWHGVTVIDDRVVKLGLMSNNLQGIL 192
            ++Q DR AL+ALYNATGGPAWT + NW  T + +  W+GVTV   +V K+ L +NNL G L
Sbjct:   34 VSQADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSGKVTKVKLTANNLTGSL 94          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A7X3S0S6_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3S0S6_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-13
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   25 DRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVI-DDRVVKLGLMSNNLQGIL 192
            DR AL+A+YNA GGPAW  + NW ++ PIS WHGVTV  DDRV +L L  N L G+L
Sbjct:  121 DRAALVAIYNALGGPAWENSANWASSFPISAWHGVTVSPDDRVTELNLWGNGLSGVL 177          
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A6H5KND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   13 MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTV-IDDRVVKLGLMSNNL 180
            MAQTDR AL+ALYNATG   W    NW+T++ +SQWHGV V    RVVKL L  NNL
Sbjct:   53 MAQTDRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVNCQGRVVKLSLGGNNL 109          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVG2_ECTSI6.600e-2884.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G496_ECTSI1.720e-1562.90Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFK2_ECTSI2.620e-1562.90Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A0S1SH81_9FLAO6.110e-1550.00Uncharacterized protein n=2 Tax=Sediminicola sp. Y... [more]
A0A6H5JSF1_9PHAE2.740e-1460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D6_9PHAE2.860e-1455.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A3B7C0B4_9FLAO2.960e-1446.77Ig-like domain-containing protein n=2 Tax=Aquimari... [more]
A0A352FEI0_9BACT5.240e-1454.10Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A7X3S0S6_9BACT1.770e-1359.65Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A6H5KND6_9PHAE1.820e-1361.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12067contigE-fasciculatus_F_contig12067:3516..3710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2e-12
Seed eggNOG ortholog2880.D8LK68
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC6.3.1.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.2404287-CDS-E-fasciculatus_F_contig12067:3515..36981622927715.2404287-CDS-E-fasciculatus_F_contig12067:3515..3698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12067 3516..3698 -
1695995663.337219-CDS-E-fasciculatus_F_contig12067:3515..36981695995663.337219-CDS-E-fasciculatus_F_contig12067:3515..3698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12067 3516..3698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.2539945-UTR-E-fasciculatus_F_contig12067:3698..37101622927715.2539945-UTR-E-fasciculatus_F_contig12067:3698..3710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12067 3699..3710 -
1695995663.3605711-UTR-E-fasciculatus_F_contig12067:3698..37101695995663.3605711-UTR-E-fasciculatus_F_contig12067:3698..3710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12067 3699..3710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12067.1614.1prot_E-fasciculatus_F_contig12067.1614.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12067 3516..3698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12067.1614.1

>prot_E-fasciculatus_F_contig12067.1614.1 ID=prot_E-fasciculatus_F_contig12067.1614.1|Name=mRNA_E-fasciculatus_F_contig12067.1614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp
MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLG
LMSNNLQGILS
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mRNA from alignment at E-fasciculatus_F_contig12067:3516..3710-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12067.1614.1 ID=mRNA_E-fasciculatus_F_contig12067.1614.1|Name=mRNA_E-fasciculatus_F_contig12067.1614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12067:3516..3710- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTTCTCCAAAATGGCTCAGACGGACCGTGTCGCACTGCTTGCCCTCTA CAACGCGACCGGCGGGCCCGCGTGGACTCGCAACGACAACTGGGACACGA CTTCCCCCATCTCGCAATGGCACGGGGTCACAGTCATCGACGACCGCGTC GTTAAGCTAGGTCTGATGTCCAACAATCTCCAAGGTATCTTAAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12067:3516..3710-

>mRNA_E-fasciculatus_F_contig12067.1614.1 ID=mRNA_E-fasciculatus_F_contig12067.1614.1|Name=mRNA_E-fasciculatus_F_contig12067.1614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12067:3516..3710- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCAGACGGACCGTGTCGCACTGCTTGCCCTCTACAACGCGACCGG
CGGGCCCGCGTGGACTCGCAACGACAACTGGGACACGACTTCCCCCATCT
CGCAATGGCACGGGGTCACAGTCATCGACGACCGCGTCGTTAAGCTAGGT
CTGATGTCCAACAATCTCCAAGGTATCTTAAGCATGGCTCAGACGGACCG
TGTCGCACTGCTTGCCCTCTACAACGCGACCGGCGGGCCCGCGTGGACTC
GCAACGACAACTGGGACACGACTTCCCCCATCTCGCAATGGCACGGGGTC
ACAGTCATCGACGACCGCGTCGTTAAGCTAGGTCTGATGTCCAACAATCT
CCAAGGTATCTTAAGC
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