mRNA_E-fasciculatus_F_contig12067.1614.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: D7FVG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG2_ECTSI) HSP 1 Score: 104 bits (259), Expect = 6.600e-28 Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1
Query: 13 MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGLMSNNLQG 186
MAQTDR ALLALY+ATGGPAWTRN NWDT SPISQW+GVTVI DRVVKL LM NN+QG
Sbjct: 1 MAQTDRAALLALYHATGGPAWTRNYNWDTDSPISQWYGVTVIGDRVVKLNLMCNNVQG 58
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 1.720e-15 Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 4 FSKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDD-RVVKLGLMSNNLQG 186
F KMAQTDR AL+ALYNATGG W N NW+T++ +SQW+ V V RVVKL L +NNLQG
Sbjct: 122 FYKMAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQG 183
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 2.620e-15 Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 4 FSKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTV-IDDRVVKLGLMSNNLQG 186
F MAQTDR AL+ALYNATGG W N NW T++ +SQWHGV V RVVKL L NNL+G
Sbjct: 68 FYTMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRG 129
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A0S1SH81_9FLAO (Uncharacterized protein n=2 Tax=Sediminicola sp. YIK13 TaxID=1453352 RepID=A0A0S1SH81_9FLAO) HSP 1 Score: 75.9 bits (185), Expect = 6.110e-15 Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 1 IFSKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGLMSNNLQGIL 192
+ +++ Q DR AL+ALYN+T G WT+ WD P+S+W+GVTV++D+VV++ L NNLQG+L
Sbjct: 7 VLAEVRQDDREALVALYNSTNGDEWTKT--WDLNQPVSEWYGVTVVNDKVVEINLFRNNLQGVL 68
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A6H5JSF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF1_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 2.740e-14 Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 13 MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDD-RVVKLGLMSNNLQGI 189
MAQTDR AL A YNATGGP W N+NW+ + S+W G+ D RVV+L L SNNLQGI
Sbjct: 53 MAQTDREALGAFYNATGGPNWEHNNNWNADADPSEWLGIETNDQGRVVRLSLGSNNLQGI 112
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.860e-14 Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 7 SKMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVID-DRVVKLGLMSNNLQG 186
S TDR AL+AL+NATGG W +N W+T +P+ QW+GV V D RVVKL L NNL+G
Sbjct: 6 STKMSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKG 66
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A3B7C0B4_9FLAO (Ig-like domain-containing protein n=2 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=A0A3B7C0B4_9FLAO) HSP 1 Score: 75.1 bits (183), Expect = 2.960e-14 Identity = 29/62 (46.77%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 10 KMAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGLMSNNLQGILS 195
+++++++ AL+ LYN+T GP WT N NW T +P+ W+GVTV++ +V+ L L++NNL GIL+
Sbjct: 2104 RVSESEKQALIDLYNSTNGPNWTNNTNWLTDAPVCDWYGVTVVEGKVISLSLVNNNLDGILT 2165
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT) HSP 1 Score: 70.1 bits (170), Expect = 5.240e-14 Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 13 MAQTDRVALLALYNATGGPAWTRNDNWD-TTSPISQWHGVTVIDDRVVKLGLMSNNLQGIL 192
++Q DR AL+ALYNATGGPAWT + NW T + + W+GVTV +V K+ L +NNL G L
Sbjct: 34 VSQADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSGKVTKVKLTANNLTGSL 94
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A7X3S0S6_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3S0S6_9BACT) HSP 1 Score: 72.8 bits (177), Expect = 1.770e-13 Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 25 DRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVI-DDRVVKLGLMSNNLQGIL 192
DR AL+A+YNA GGPAW + NW ++ PIS WHGVTV DDRV +L L N L G+L
Sbjct: 121 DRAALVAIYNALGGPAWENSANWASSFPISAWHGVTVSPDDRVTELNLWGNGLSGVL 177
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Match: A0A6H5KND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND6_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.820e-13 Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 13 MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTV-IDDRVVKLGLMSNNL 180
MAQTDR AL+ALYNATG W NW+T++ +SQWHGV V RVVKL L NNL
Sbjct: 53 MAQTDRKALVALYNATGRAKWEYTRNWNTSAALSQWHGVEVNCQGRVVKLSLGGNNL 109 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12067.1614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12067.1614.1 >prot_E-fasciculatus_F_contig12067.1614.1 ID=prot_E-fasciculatus_F_contig12067.1614.1|Name=mRNA_E-fasciculatus_F_contig12067.1614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=61bp MAQTDRVALLALYNATGGPAWTRNDNWDTTSPISQWHGVTVIDDRVVKLGback to top mRNA from alignment at E-fasciculatus_F_contig12067:3516..3710- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12067.1614.1 ID=mRNA_E-fasciculatus_F_contig12067.1614.1|Name=mRNA_E-fasciculatus_F_contig12067.1614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12067:3516..3710- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12067:3516..3710- >mRNA_E-fasciculatus_F_contig12067.1614.1 ID=mRNA_E-fasciculatus_F_contig12067.1614.1|Name=mRNA_E-fasciculatus_F_contig12067.1614.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12067:3516..3710- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |