mRNA_E-fasciculatus_F_contig1206.1606.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1206.1606.1 vs. uniprot
Match: A0A6H5J884_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J884_9PHAE) HSP 1 Score: 654 bits (1688), Expect = 4.620e-232 Identity = 345/395 (87.34%), Postives = 358/395 (90.63%), Query Frame = 1
Query: 64 MAGRRLGCALASNASALAACAVAVSAVQSSLTFLSCSSXXXXXXXXXXXXXXXXXXXXXXXXEPVNPCAEFNTLKWRMSYASRKDDCNAEDSCVFIGRSVTGACVPRDPSILHKRRSFPNVPLVLPDSDGSSKKLQAALQRQHTAKVMSETIDELESEYEHKGVEWYSDTTLAANKFRELMSALDVEESTQELALAILKEEGMHAVQVFVKSQLANAAAEELRYQKSATEAFAKDFLMEVMREPELPGQMGHMLESVFKDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPLVRWLLSETDWMDAEAAKLCAYLVGLEQTELATIWLVAWAVREPGILDPSSSRGLAASLPLGSQQVTDAMVWALTETLKSDWALEMAKSTTVEMIKSRPNGTEKE 1248
MAG RL C LASNASALA+C V SAVQSSLT LSCS+ EPVNPCAEFNTLKWRMSYA RK+DCN EDSCVF+GRSVTGACVPRDPSILHKRRSFPNVPLVLPDSDGS+KKLQAALQRQHTAKVMSETIDELESE+EHKGVE YSDT LAANKFRELMSALDVEESTQELALAIL+EEGMHAVQVFVKSQLANAAAEELRYQKSATEAFAKDFLMEV+REPELPGQMGHMLESVFKDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPL+RWLLSETDWMDAEAAKLCAYLV LEQTELATI LVAWA+REPGILDPSSSRGLAASLPLGSQQ+TD+MVWALTETLKSDWALEMAKSTTVEMIKSRPNGT+KE
Sbjct: 1 MAGSRLCCTLASNASALASCTVVASAVQSSLTSLSCSNSEDGGSRRRGNNRRVRERSEEEA-EPVNPCAEFNTLKWRMSYAHRKNDCNGEDSCVFVGRSVTGACVPRDPSILHKRRSFPNVPLVLPDSDGSTKKLQAALQRQHTAKVMSETIDELESEFEHKGVEPYSDTKLAANKFRELMSALDVEESTQELALAILQEEGMHAVQVFVKSQLANAAAEELRYQKSATEAFAKDFLMEVIREPELPGQMGHMLESVFKDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPLIRWLLSETDWMDAEAAKLCAYLVRLEQTELATILLVAWAIREPGILDPSSSRGLAASLPLGSQQITDSMVWALTETLKSDWALEMAKSTTVEMIKSRPNGTDKE 394
BLAST of mRNA_E-fasciculatus_F_contig1206.1606.1 vs. uniprot
Match: A0A4D9D506_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D506_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.160e-11 Identity = 80/321 (24.92%), Postives = 141/321 (43.93%), Query Frame = 1
Query: 253 PVNPCAEFNTLKWR-MSYASRKDDCN-AEDSCVFIGRSVTGACVPRDPSILHKRRSFPNVPLVLPDSDGSSKKLQAALQRQHTAKVMSETIDELESEYEHKGVEWYSDTTLAANKFRELMSALDVEESTQELALAILKEEGMHA-VQVFVKSQLANAAAEELRYQKSATEAFAKDFLMEVMREPELPGQMGHMLESVFKDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPLVRWLLSETDWMDAEAAKLCAYLVGLEQTELATIWLVAWAVREPGILDPSSSRGLAASL-PLGSQQVTDAMVWALTETLKSDWALEMAKST 1203
P PC ++N++ R +++ +R+ CN A +CVF+GRS+TG CVP D + L++ V+P S + E D E+++ N M VE + + I+++EG+ V++ + LA A + LR +S T+ AK+ +MEV+ +P + H+L P L+ +R L++ + L +T + S L + WL+ + L L+ L T A L++W++ G L P + + L PL + + E L+ ++ E+AK T
Sbjct: 163 PPGPCDKYNSIASRFLTWQTRRRKCNLAPGNCVFMGRSLTGWCVPEDEAALYES--------VMPRQKWSEEXXXXXX----XXXXRGEIEDGGEADF------------FPPNDPEGPM----VETELLQSLVTIIRQEGIEQPVRLLITGSLAEAMTDSLRDGQSGTQELAKELVMEVLADPNSAAAVQHLLMR----PELAASLRGLVHPLLLLPFTKRESHRLLKQQLDWLMVRNPATERSLGGLGQLLLRLASTRAAIASLLSWSLSPSGPLPPLVTDLTSDRLVPLLAPATXXXXXXXVHEALEDEYIRELAKDT 451 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1206.1606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1206.1606.1 >prot_E-fasciculatus_F_contig1206.1606.1 ID=prot_E-fasciculatus_F_contig1206.1606.1|Name=mRNA_E-fasciculatus_F_contig1206.1606.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=408bp MANPAHANDTTAMAGRRLGCALASNASALAACAVAVSAVQSSLTFLSCSSback to top mRNA from alignment at E-fasciculatus_F_contig1206:259..7224- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1206.1606.1 ID=mRNA_E-fasciculatus_F_contig1206.1606.1|Name=mRNA_E-fasciculatus_F_contig1206.1606.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1206:259..7224- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1206:259..7224- >mRNA_E-fasciculatus_F_contig1206.1606.1 ID=mRNA_E-fasciculatus_F_contig1206.1606.1|Name=mRNA_E-fasciculatus_F_contig1206.1606.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2448bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1206:259..7224- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |