mRNA_E-fasciculatus_F_contig12035.1586.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12035.1586.1
Unique NamemRNA_E-fasciculatus_F_contig12035.1586.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 8.540e-41
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            ++VKSGDYTIYVHIIEARDLKAED+QGTSDPVVYVEAFGQK+ATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR
Sbjct:  365 IEVKSGDYTIYVHIIEARDLKAEDLQGTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 441          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.590e-40
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            ++VKSGDYTIYVHIIEARDLKAED+QGTSDPVVYVEAFGQKYATEVK ACLSCVFDETFVIGLRNLDKDEFEEGVIR
Sbjct:  422 IEVKSGDYTIYVHIIEARDLKAEDLQGTSDPVVYVEAFGQKYATEVKAACLSCVFDETFVIGLRNLDKDEFEEGVIR 498          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 5.680e-28
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   25 QVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            +V SGDY  YVHIIE R+LK ED+QGTSDPVVYVEAFGQK+ATEV +  L+ VFDETFVI LRNLD+D+F+EGV R
Sbjct:  663 KVISGDYVAYVHIIEVRELKGEDLQGTSDPVVYVEAFGQKFATEVVKDRLNAVFDETFVINLRNLDQDDFKEGVFR 738          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A6H5L7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.680e-28
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   25 QVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            +V SGDY  YVHIIE R+LK ED+QGTSDPVVYVEAFGQK+ATEV +  L+ VFDETFVI LRN+D+D+F+EGV R
Sbjct:  733 KVVSGDYVAYVHIIEVRELKGEDLQGTSDPVVYVEAFGQKFATEVVKDRLNAVFDETFVINLRNMDQDDFKEGVFR 808          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A812YP87_SYMMI (Myof protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YP87_SYMMI)

HSP 1 Score: 98.2 bits (243), Expect = 8.860e-23
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            +++KSGDY + V+I+EAR+LK +D+ G SDPVV + AFG+K ++ V+ A L+CVFDE F+   RN+DKD F EGVIR
Sbjct:   94 IEIKSGDYQVQVNILEARELKGKDMNGLSDPVVTIHAFGEKQSSSVQRASLNCVFDELFIFNFRNMDKDVFSEGVIR 170          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A7S1XRY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRY6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.440e-22
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVI 249
            V++KSGDY   VHIIE RDLK ED++GTSDPVVYVE  G+K AT V     + VFDE F+I LRN+DK++FEE VI
Sbjct:    3 VEIKSGDYQFQVHIIECRDLKGEDLEGTSDPVVYVEVLGKKVATSVISKQNNPVFDERFIINLRNVDKEDFEEAVI 78          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A7S3HPR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPR4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.850e-22
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            +++K GDY + VHIIEAR+LKAE++ GTSDPVVYVE FGQK  T   ++  SCV+DE F+  ++NLDK+ F +G++R
Sbjct:  406 IEIKDGDYQVQVHIIEARELKAENLDGTSDPVVYVECFGQKQNTICVKSVTSCVYDELFIFNMKNLDKETFADGLLR 482          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A7S2D049_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D049_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.010e-21
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            +++KSGDY + VHIIE R+LK +D++GTSDPVV +EAFG+K +T V + C + V+DE F+   RN+DK EFEE +I+
Sbjct:  230 IEIKSGDYQVQVHIIECRELKGKDLEGTSDPVVTIEAFGEKQSTAVMDKCANPVYDELFIFNKRNIDKLEFEEELIK 306          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A7S3JSY6_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSY6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.020e-21
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            ++VKSGDY + V IIEAR+LK ++  GTSDPV  +E FG+K  + V   CLSCVFDETF+I  RNLDKD F+E  I+
Sbjct:  389 IEVKSGDYQVIVDIIEARELKPKNWSGTSDPVCVIECFGEKRTSSVHNDCLSCVFDETFIINKRNLDKDIFKESSIK 465          
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Match: A0A5D6XHY7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.200e-21
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 VQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 252
            +++KSGDYTI VH+IEARDL  +D  GTSDPVVYVE  G+K  T VK+  L+CV+D+  +  LRN+DK E E G ++
Sbjct:  388 IEIKSGDYTIQVHVIEARDLVPKDATGTSDPVVYVEVLGEKQQTAVKKQMLNCVWDDLLIFPLRNIDKAEIEMGYVK 464          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12035.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF91_ECTSI8.540e-4194.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL55_9PHAE1.590e-4094.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI5.680e-2873.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7Z1_9PHAE7.680e-2872.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812YP87_SYMMI8.860e-2355.84Myof protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S1XRY6_9STRA1.440e-2263.16Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HPR4_9STRA4.850e-2255.84Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2D049_9STRA6.010e-2154.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3JSY6_9STRA6.020e-2158.44Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A5D6XHY7_9STRA8.200e-2155.84Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12035contigE-fasciculatus_F_contig12035:837..1545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue8.6e-35
Seed eggNOG ortholog2880.D8LF91
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.1704867-CDS-E-fasciculatus_F_contig12035:836..9891622927712.1704867-CDS-E-fasciculatus_F_contig12035:836..989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12035 837..989 -
1695995661.928061-CDS-E-fasciculatus_F_contig12035:836..9891695995661.928061-CDS-E-fasciculatus_F_contig12035:836..989Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12035 837..989 -
1622927712.1866853-CDS-E-fasciculatus_F_contig12035:1446..15451622927712.1866853-CDS-E-fasciculatus_F_contig12035:1446..1545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12035 1447..1545 -
1695995661.9422426-CDS-E-fasciculatus_F_contig12035:1446..15451695995661.9422426-CDS-E-fasciculatus_F_contig12035:1446..1545Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12035 1447..1545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12035.1586.1prot_E-fasciculatus_F_contig12035.1586.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12035 837..1545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12035.1586.1

>prot_E-fasciculatus_F_contig12035.1586.1 ID=prot_E-fasciculatus_F_contig12035.1586.1|Name=mRNA_E-fasciculatus_F_contig12035.1586.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp
MPVVVVVVQVKSGDYTIYVHIIEARDLKAEDVQGTSDPVVYVEAFGQKYA
TEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR
back to top

mRNA from alignment at E-fasciculatus_F_contig12035:837..1545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12035.1586.1 ID=mRNA_E-fasciculatus_F_contig12035.1586.1|Name=mRNA_E-fasciculatus_F_contig12035.1586.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=709bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12035:837..1545- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGTGGTTGTGGTTGTGGTGCAGGTTAAGTCCGGCGATTACACGAT CTACGTCCACATCATAGAGGCGAGAGACTTGAAGGCCGAGGACGTGCAGG TGAGACAAAAGTACAAATTATTAGCAAAGACGACATTGTAGACATGAGAG AAAAGTACAAATATAATCAGCCAAGACGACAATAGACAATCGCAGACATT CTAAAAAAATAGAGCAGAAAACAAAGATATGTGAAAAGATGGAACGGGAC AAGAGCGATTTCAAAAGCAAACACCAAATGTAACAAACCTGTATCAGCAA CAACAGAAGCACCATTGTAGGAGAAAAGTGGCGAACAGGGTGTCGAAAAC GAGAGATGTGACCGTTGCACAACGGCTGCGAGGGGAGGGCGGGTCAAGGA TCGGAGAAGTACCTGGGGGTGGTTGGAGGGTGCAACAGCAGAAGCATCAG CAGCAACAACAGCACTAACGGTAAGAACAACAACCAACACACTATAATAC TGTATCAACAACACCGACAACACTATCAACAACAACAATGACAACAACAA TTGCAGGGCACGTCGGACCCCGTGGTGTACGTGGAGGCGTTCGGTCAGAA GTACGCCACCGAGGTGAAGGAGGCGTGTCTTAGCTGTGTCTTCGACGAGA CCTTCGTCATCGGCCTCAGGAACCTGGACAAGGACGAGTTCGAGGAGGGA GTCATCAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12035:837..1545-

>mRNA_E-fasciculatus_F_contig12035.1586.1 ID=mRNA_E-fasciculatus_F_contig12035.1586.1|Name=mRNA_E-fasciculatus_F_contig12035.1586.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12035:837..1545- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGTGGTTGTGGTTGTGGTGCAGGTTAAGTCCGGCGATTACACGAT
CTACGTCCACATCATAGAGGCGAGAGACTTGAAGGCCGAGGACGTGCAGA
TGCCCGTGGTTGTGGTTGTGGTGCAGGTTAAGTCCGGCGATTACACGATC
TACGTCCACATCATAGAGGCGAGAGACTTGAAGGCCGAGGACGTGCAGGG
CACGTCGGACCCCGTGGTGTACGTGGAGGCGTTCGGTCAGAAGTACGCCA
CCGAGGTGAAGGAGGCGTGTCTTAGCTGTGTCTTCGACGAGACCTTCGTC
ATCGGCCTCAGGAACCTGGACAAGGACGAGTTCGAGGAGGGAGTCATCAG
GGGCACGTCGGACCCCGTGGTGTACGTGGAGGCGTTCGGTCAGAAGTACG
CCACCGAGGTGAAGGAGGCGTGTCTTAGCTGTGTCTTCGACGAGACCTTC
GTCATCGGCCTCAGGAACCTGGACAAGGACGAGTTCGAGGAGGGAGTCAT
CAGG
back to top