mRNA_E-fasciculatus_F_contig12018.1575.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12018.1575.1
Unique NamemRNA_E-fasciculatus_F_contig12018.1575.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 1.020e-135
Identity = 225/232 (96.98%), Postives = 227/232 (97.84%), Query Frame = 1
Query:    1 MVTDEDPANGATAEAEADTNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSA--RGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            MVTDEDPANGATAEAEA+TNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQ STSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRA  DRNSA  RGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPD+VRKV
Sbjct:    1 MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKV 232          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 174 bits (440), Expect = 5.490e-51
Identity = 87/183 (47.54%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  145 LSHEEQQKA-DVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            +S E  +++ DV GK+FLGG++WQTTED LK +F K+G L D  +M++K TG+PRGFGFVQF+ +++ D  L EEH IDGR +D+K+A+ R+ AP  RA +++   +                   KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY   + V +V
Sbjct:    1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKIDVK-------------------KIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRV 162          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A7S3XN27_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN27_HETAK)

HSP 1 Score: 171 bits (434), Expect = 3.260e-50
Identity = 88/181 (48.62%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  145 LSHEEQQKA-DVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVR 684
            +S E  +++ DV GK+FLGG++WQTTED LK +F K+G L D  +M++K TG+PRGFGFVQF+ +++ D  L EEH IDGR +D+K+A+ R+ AP  RA +++   +                   KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY   D VR
Sbjct:    1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKIDVK-------------------KIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTY--ADAVR 158          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A2D4CBA9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBA9_PYTIN)

HSP 1 Score: 174 bits (441), Expect = 1.860e-49
Identity = 88/166 (53.01%), Postives = 117/166 (70.48%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRATTDRNSARGGSQVGGRHGGMNDAPL---TNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYD 666
            GK+F+GG++W+TTED L++HFGK+GAL D  LM++K TG+PRGFGFV F  ++  D  L+E HVIDGRT++VKRA+PRD+ AP P      +  RGG   GG HGG   +     + K FVGGL   V + DFR YF ++GK+ DAVVM D+ T RSRGFG +T++
Sbjct:  126 GKLFIGGVSWETTEDGLRSHFGKYGALTDAALMKDKFTGQPRGFGFVTFADASVIDRVLEEAHVIDGRTVEVKRAIPRDKTAPAP------SEHRGGGSGGG-HGGYGRSGTFMESKKXFVGGLAPSVTEQDFRQYFEEYGKITDAVVMIDRDTQRSRGFGXVTFE 284          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 7.970e-49
Identity = 89/185 (48.11%), Postives = 120/185 (64.86%), Query Frame = 1
Query:  136 AKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            A  ++H++    DVEGK+F+GG++WQTTE+ L+ HFGK+G L D+ LM++K TG PRGFGF++F+  T  D  L +EH IDG+ +DVKRAVP+  AP P + + R +                   TNKIFVGGL   V  A+FR YF  FG V DAVVM+D++T RSRGFGF+T+    VV  +
Sbjct:  135 AGSVAHDKDN--DVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAE------------------TNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDI 299          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A8K1C8M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8M2_PYTOL)

HSP 1 Score: 175 bits (444), Expect = 1.120e-48
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRATTDRNSARGGSQVGGRHGGMNDAPL---------TNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            GK+F+GG++W+TTED L+ HFGK+GAL D  LM++K TG+PRGFGFV F  +T+ D  L+E HVIDGRT++VKRA+PRD+ AP P             + GG +G                + KIFVGGL   V + DFR YF +FGK+ DAVVM D+ T RSRGFGF+T+D    V +V
Sbjct:   99 GKLFIGGVSWETTEDSLRGHFGKYGALTDAALMKDKFTGQPRGFGFVTFADATAIDRVLEESHVIDGRTVEVKRAIPRDKTAPGP----------SDGRFGGGYGRXXXXXXXXXXXGYTESKKIFVGGLAPSVTEQDFRQYFEEFGKITDAVVMIDRDTQRSRGFGFVTFDEEGAVAEV 268          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: F0XVG7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVG7_AURAN)

HSP 1 Score: 165 bits (418), Expect = 1.600e-48
Identity = 81/174 (46.55%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  169 ADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            A  +GK+FLGG+ W T E+ L+ +FG++G + DV +MRNK TG  RGFGFV +      DA L  +HV+DGR +D+K AVPRDRAP                          APL+NK FVGGL   V D +FRGYF +FG++ D++VM D+ T RSRGFGF+TY  P+   +V
Sbjct:    2 AGAQGKLFLGGIAWTTDEEALRHYFGQFGEIIDVAVMRNKATGVSRGFGFVTYARPGCVDAVLGRDHVLDGRRVDIKLAVPRDRAP--------------------------APLSNKFFVGGLPSAVADPEFRGYFEQFGQLTDSIVMVDRGTNRSRGFGFVTYADPEAANRV 149          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL)

HSP 1 Score: 171 bits (434), Expect = 1.770e-48
Identity = 84/170 (49.41%), Postives = 118/170 (69.41%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            GK+F+GG++W+TTED L+ HFGK+GAL D  LM++K TG+PRGFGFV F  +++ D  L+E H +DGR+++VKRA+PR+R   P ++  R +  G S  G    G+     + KIFVGGL   + + DFR YF +FG++ DAVVM D+ T RSRGFGFIT++    V +V
Sbjct:  127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERT-APGSSEFRGARSGYSSNGXXXXGI--FTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEV 293          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.130e-48
Identity = 86/171 (50.29%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            EGK+F+GG++WQTTED L+ +F K+G L DV +M++K TG+PRGFGFV F+ ++  +  L + H +DGR +D KRAV R+ +  PR              GG +GG      + KIFVGGL   V + DFRGYF KFG + DAVVM D+ TGRSRGFGF+TYD    VR V
Sbjct:    4 EGKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREESSAPR--------------GGGYGGE-----SKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDV 155          
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A225W0H2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0H2_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.830e-48
Identity = 89/171 (52.05%), Postives = 119/171 (69.59%), Query Frame = 1
Query:  181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
            GK+F+GG++W+TTED L+ HFGK+G+L D  LM++K TG+PRGFGFV F  +++ D  L E H +DGR+++VKRA+PR+R AP    ++D  S R G   GG  GG  +     KIFVGGL   V + DFR YF +FGK+ DAVVM D+ T RSRGFGFIT++    V +V
Sbjct:  104 GKLFIGGVSWETTEDTLRQHFGKYGSLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDEAHTLDGRSVEVKRAIPRERTAP---GSSDFRSGRSGFGFGGG-GGFTEQ---KKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEV 267          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI1.020e-13596.98RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A7S3UWI8_HETAK5.490e-5147.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XN27_HETAK3.260e-5048.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4CBA9_PYTIN1.860e-4953.01Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D7FW71_ECTSI7.970e-4948.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C8M2_PYTOL1.120e-4850.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0XVG7_AURAN1.600e-4846.55Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0P1AWA8_PLAHL1.770e-4849.41Heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
A0A7S2XZ50_9STRA2.130e-4850.29Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A225W0H2_9STRA2.830e-4852.05Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12018contigE-fasciculatus_F_contig12018:138..3146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.1
Seed ortholog evalue1.4e-108
Seed eggNOG ortholog2880.D7FQT7
Preferred nameHNRNPA1
KEGG rclassRC00302
KEGG koko:K12235,ko:K12741,ko:K14411
KEGG ReactionR00589
KEGG Pathwayko00260,ko01100,ko03015,ko03040,map00260,map01100,map03015,map03040
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009791,GO:0009987,GO:0010228,GO:0010467,GO:0016070,GO:0016071,GO:0022414,GO:0030154,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034046,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0047484,GO:0048468,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0061458,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901000,GO:1901360,GO:1901363,GO:1990904,GO:2000070
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
EC5.1.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding protein
Ec32 orthologEc-16_000660.1
Exons7
Model size690
Cds size690
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.0618877-CDS-E-fasciculatus_F_contig12018:137..2431622927711.0618877-CDS-E-fasciculatus_F_contig12018:137..243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 138..243 -
1695995661.3876815-CDS-E-fasciculatus_F_contig12018:137..2431695995661.3876815-CDS-E-fasciculatus_F_contig12018:137..243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 138..243 -
1622927711.0830083-CDS-E-fasciculatus_F_contig12018:522..5841622927711.0830083-CDS-E-fasciculatus_F_contig12018:522..584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 523..584 -
1695995661.4015224-CDS-E-fasciculatus_F_contig12018:522..5841695995661.4015224-CDS-E-fasciculatus_F_contig12018:522..584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 523..584 -
1622927711.0992355-CDS-E-fasciculatus_F_contig12018:830..9181622927711.0992355-CDS-E-fasciculatus_F_contig12018:830..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 831..918 -
1695995661.4113126-CDS-E-fasciculatus_F_contig12018:830..9181695995661.4113126-CDS-E-fasciculatus_F_contig12018:830..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 831..918 -
1622927711.112093-CDS-E-fasciculatus_F_contig12018:1171..12651622927711.112093-CDS-E-fasciculatus_F_contig12018:1171..1265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 1172..1265 -
1695995661.4267886-CDS-E-fasciculatus_F_contig12018:1171..12651695995661.4267886-CDS-E-fasciculatus_F_contig12018:1171..1265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 1172..1265 -
1622927711.1266205-CDS-E-fasciculatus_F_contig12018:2165..23391622927711.1266205-CDS-E-fasciculatus_F_contig12018:2165..2339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 2166..2339 -
1695995661.4370246-CDS-E-fasciculatus_F_contig12018:2165..23391695995661.4370246-CDS-E-fasciculatus_F_contig12018:2165..2339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 2166..2339 -
1622927711.1368105-CDS-E-fasciculatus_F_contig12018:2632..27621622927711.1368105-CDS-E-fasciculatus_F_contig12018:2632..2762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 2633..2762 -
1695995661.4476385-CDS-E-fasciculatus_F_contig12018:2632..27621695995661.4476385-CDS-E-fasciculatus_F_contig12018:2632..2762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 2633..2762 -
1622927711.152163-CDS-E-fasciculatus_F_contig12018:3110..31461622927711.152163-CDS-E-fasciculatus_F_contig12018:3110..3146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 3111..3146 -
1695995661.4570916-CDS-E-fasciculatus_F_contig12018:3110..31461695995661.4570916-CDS-E-fasciculatus_F_contig12018:3110..3146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12018 3111..3146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12018.1575.1prot_E-fasciculatus_F_contig12018.1575.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12018 138..3146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12018.1575.1

>prot_E-fasciculatus_F_contig12018.1575.1 ID=prot_E-fasciculatus_F_contig12018.1575.1|Name=mRNA_E-fasciculatus_F_contig12018.1575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp
MVTDEDPANGATAEAEADTNGTAETNGTADVTAAADGAPAVEGEKAKELS
HEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGE
PRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDR
NSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVE
DAVVMYDKKTGRSRGFGFITYDSPDVVRKV
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mRNA from alignment at E-fasciculatus_F_contig12018:138..3146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12018.1575.1 ID=mRNA_E-fasciculatus_F_contig12018.1575.1|Name=mRNA_E-fasciculatus_F_contig12018.1575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3009bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12018:138..3146- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGACTGATGAAGACCCCGCCAACGGTGCAACGGTGAGCTGATATGA TGTCACCTAAACCGGGGATTGTATGGGTACTCCAAGAGCGGTGCTGGGGC GAGGACCCTTGATATGGTTTGATGTGTTTGATCTATGGTTCCTGTGTGTC TAGGGCAAATCGAAAGTCCCTCTCTGGCGTCGTTTGGTCTGTCTGCGTCC TGCAGCAGTTGCGAGAGACGTTGCACTCGGTCACAACCGCCGTGATTTGC TTGCTGTCCGCTCTTTCGGCACTTGTACTACTCATACTGCGGTTCCGCAA GTGTAGCATTATGAGCAGCCAACACGAACACTCTCCGCCTCGGCCGCTGT TGCTGTATATGGGATGTTGTTGGATTTGGGACAGGCTGAAGCTGAGGCGG ACACAAACGGCACGGCCGAGACCAACGGCACGGCCGACGTAACCGCGGCT GCGGACGGTGCGCCTGCCGTGGAAGGTGAAAAGGCCAAGGAGTTGTCGCA CGAAGAACAGCAGAGTAAGTGCTGCCGACTCCACGATACCGCACGCAGGG CAATACCACACCACACCACCGCTCTCGTCTTTCAGTGCCACAATAGTCAC AAGTTTGGAGCTTGTCCAGGGGCACTAGTGCGTCCTATATGCTTGTCTGA CTGGTATACTGGTAGATATCGCACTCAAATCGGAAGGAACGATTCCCACC CCCGTTGCCACACGCACGTTGTGCGGTAGGAATTCGTTACGTTTCTTCTC GGTCGGTTTGTCCCCGGCTTGTTGACGTTGACGGATGACCCTTGTCTTGA CTTTCAGAGGCCGATGTGGAGGGGAAGATCTTCCTGGGCGGCCTGACTTG GCAGACGACTGAAGACATGCTCAAGACGCACTTCGGGAAGTGGGGCGCTC TGAATGACGTCATCCTGATGCGCAACAAAATCACCGGAGAACCTCGCGGC TTTGGCTTCGTGCAGTTCCAATCGTCCACATGTGGGTCTCGTCTCCTACA TCGATGATGTGACGCTGTCGTGTTATTTTACCGTTGTGTCGAGAGGAAGG CGATTCCCGCTTCTTTATTGGTTGATCTTGAGATGTGCACTTGCGTCGGC TTGGGCATGCACGCTGCTTCTCTGGCACTGTTGCTGTCCCTTGTTTATGA TTTTAACTTTTTGCCACTTTCGTCCTCGACATCGAGTAATTTGATACCTG CTGAGTGACACGGTCAGCACTTGGAGCTTCCCATTGCACAGAGTACAGGA CAGCAAGCAGGTTGGAGTACGGCAAGATACATCACAGCTTCGGGTTCGAC AGACATCAGTTCAGCGGTACTTGCAGCGTATCGTACGTGCTGACTCTATG TTCAGTTATATTAGTGGGAACAGAGGATGGAGAAGGACGGCTGCAGCACG CAAGGCAGAGCAGACGTGCATGTTAGGGCGCAAGCAGTGGGGAGCAAGTT CGCTCGAAGACCCCGTCTGGATTGTGGTCTCGTATACAGTACGTTTTCCC GACAGCGGTACAACTGCACAGCAACGTCAGCATCAGCAGAGCAGCGTGCA GCAGTGGCTTCGTTGGTCGCGGAGGAAGGGACTGGCAGTGGCGGCAATTC CGGGTGGACATTTTGTTCATCTTGATTCTTGCTTCAGCCATTTGTCTTTT TTCGACTACTCCGCTGTGCATGTTGTCGTTCAGCTTTTCATGTCGCTGTC CGTTCATGGTCTGGAAGACCCAAGATCGTTGCCTACTTCTGTATGCATGT ACGCATTGTACTGCGGCGAAGAAGGAAGCAGGCCGCGGCAAATGCAGCTA TTCAACTTGTATTATTTTGTGTTTTGCTCGTTGCTCTTCTGTCCCCTGTT CCGTTGTCTTGTCTCCAAATTTGCTTGTTAGCTGCGGATGCCGCCCTCAA GGAAGAACACGTGATAGATGGCAGGACCATAGACGTCAAGAGGGCTGTCC CTAGGGACAGGGCACCGCTGCCTAGGTTGGTTAGAGTCATGGGAGTCGTT TTTTCGTGTCAAGTGTTTTGCAGCGCGGGTTGGCTATGTTAAGTGTGCAG CCCTGGTGTACGTAGATAGTATGGAGCTTCTAGTGTAGGCGCCTGCGTTC GCTCCTCGGTGAATACTAACTGCTACCCTTATTTCACCCTTTTTCTGCCC GTCCCTACGCATGTCCGGAATATAATGACATGGTGTGGTGGGAACCGTGT GTCGGTGGCTCCATTCTCATGGCTTTAGGGCCACAACCGACCGCAACAGT GCAAGAGGAGGGTCTCAGGTGGGCGGCCGCCACGGCGGCATGAATGATGC CCCTCTGACTAACAAGGTGAGAGTAGCACCGTGCCCATCCCCCCCTTACG CTGCGTTGTCGCGGTGCAGTTGTGGACGATCGGATTGGAATGTGGACGGT TTGGGCATATTTTGATTGACTTCAGAGTTGTTTCCCGGGGGCTGCTTCAA GATTCACGGTTGGTACTGTTTTGTTTGTCATAACTCCATGGTTTTGGTCA CTCGTTCCTCTTACAATACAATATGTTGTCTGTTTTCTTGCGCGTGCGTT TCGTTTATCCAGATCTTTGTGGGTGGTCTTGATCAGGAGGTGAACGACGC CGACTTCCGGGGTTACTTCGCCAAGTAAGGGCAGTAACAGCAGTTGACTG CAGCAGTGCTGTGTTTTTCATCGTCACGGTCAGCTGAGTTTCATGGTGTC ATGCGCACTGATATTCAATATTAAGGATCACGTGACTTGTGCTCGATCTG GGCATTCTTACACGCAGCTGGCGCGTTTAGATGTGTTCAAGGTGTGTTGC AACTGCGACACCCACATTTTGCACCGTTTCTTGTAAACAAACTAAAAATT GGACGGATGACATCAACATGCATTTAACATGCTTGCGTTGGTGTCACGAG CAGGTTCGGCAAAGTAGAAGACGCGGTTGTGATGTACGATAAGAAGACGG GCAGGTCTAGGGGATTCGGATTCATCACCTACGACAGCCCGGACGTCGTG CGCAAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12018:138..3146-

>mRNA_E-fasciculatus_F_contig12018.1575.1 ID=mRNA_E-fasciculatus_F_contig12018.1575.1|Name=mRNA_E-fasciculatus_F_contig12018.1575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12018:138..3146- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGACTGATGAAGACCCCGCCAACGGTGCAACGATGGTGACTGATGA
AGACCCCGCCAACGGTGCAACGGCTGAAGCTGAGGCGGACACAAACGGCA
CGGCCGAGACCAACGGCACGGCCGACGTAACCGCGGCTGCGGACGGTGCG
CCTGCCGTGGAAGGTGAAAAGGCCAAGGAGTTGTCGCACGAAGAACAGCA
GAGCTGAAGCTGAGGCGGACACAAACGGCACGGCCGAGACCAACGGCACG
GCCGACGTAACCGCGGCTGCGGACGGTGCGCCTGCCGTGGAAGGTGAAAA
GGCCAAGGAGTTGTCGCACGAAGAACAGCAGAAGGCCGATGTGGAGGGGA
AGATCTTCCTGGGCGGCCTGACTTGGCAGACGACTGAAGACATGCTCAAG
ACGCACTTCGGGAAGTGGGGCGCTCTGAATGACGTCATCCTGATGCGCAA
CAAAATCACCGGAGAACCTCGCGGCTTTGGCTTCGTGCAGTTCCAATCGT
CCACATAGGCCGATGTGGAGGGGAAGATCTTCCTGGGCGGCCTGACTTGG
CAGACGACTGAAGACATGCTCAAGACGCACTTCGGGAAGTGGGGCGCTCT
GAATGACGTCATCCTGATGCGCAACAAAATCACCGGAGAACCTCGCGGCT
TTGGCTTCGTGCAGTTCCAATCGTCCACATCTGCGGATGCCGCCCTCAAG
GAAGAACACGTGATAGATGGCAGGACCATAGACGTCAAGAGGGCTGTCCC
TAGGGACAGGGCACCGCTGCCTAGCTGCGGATGCCGCCCTCAAGGAAGAA
CACGTGATAGATGGCAGGACCATAGACGTCAAGAGGGCTGTCCCTAGGGA
CAGGGCACCGCTGCCTAGGGCCACAACCGACCGCAACAGTGCAAGAGGAG
GGTCTCAGGTGGGCGGCCGCCACGGCGGCATGAATGATGCCCCTCTGACT
AACAAGGGCCACAACCGACCGCAACAGTGCAAGAGGAGGGTCTCAGGTGG
GCGGCCGCCACGGCGGCATGAATGATGCCCCTCTGACTAACAAGATCTTT
GTGGGTGGTCTTGATCAGGAGGTGAACGACGCCGACTTCCGGGGTTACTT
CGCCAAATCTTTGTGGGTGGTCTTGATCAGGAGGTGAACGACGCCGACTT
CCGGGGTTACTTCGCCAAGTTCGGCAAAGTAGAAGACGCGGTTGTGATGT
ACGATAAGAAGACGGGCAGGTCTAGGGGATTCGGATTCATCACCTACGAC
AGCCCGGACGTCGTGCGCAAGGTAGTTCGGCAAAGTAGAAGACGCGGTTG
TGATGTACGATAAGAAGACGGGCAGGTCTAGGGGATTCGGATTCATCACC
TACGACAGCCCGGACGTCGTGCGCAAGGTA
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