mRNA_E-fasciculatus_F_contig12018.1575.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 1.020e-135 Identity = 225/232 (96.98%), Postives = 227/232 (97.84%), Query Frame = 1
Query: 1 MVTDEDPANGATAEAEADTNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSA--RGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
MVTDEDPANGATAEAEA+TNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQ STSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRA DRNSA RGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPD+VRKV
Sbjct: 1 MVTDEDPANGATAEAEAETNGTXXXXXXXXXXXXXXXXXXXXXXKAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKV 232
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK) HSP 1 Score: 174 bits (440), Expect = 5.490e-51 Identity = 87/183 (47.54%), Postives = 121/183 (66.12%), Query Frame = 1
Query: 145 LSHEEQQKA-DVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
+S E +++ DV GK+FLGG++WQTTED LK +F K+G L D +M++K TG+PRGFGFVQF+ +++ D L EEH IDGR +D+K+A+ R+ AP RA +++ + KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY + V +V
Sbjct: 1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKIDVK-------------------KIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRV 162
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A7S3XN27_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN27_HETAK) HSP 1 Score: 171 bits (434), Expect = 3.260e-50 Identity = 88/181 (48.62%), Postives = 120/181 (66.30%), Query Frame = 1
Query: 145 LSHEEQQKA-DVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVR 684
+S E +++ DV GK+FLGG++WQTTED LK +F K+G L D +M++K TG+PRGFGFVQF+ +++ D L EEH IDGR +D+K+A+ R+ AP RA +++ + KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY D VR
Sbjct: 1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKIDVK-------------------KIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTY--ADAVR 158
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A2D4CBA9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBA9_PYTIN) HSP 1 Score: 174 bits (441), Expect = 1.860e-49 Identity = 88/166 (53.01%), Postives = 117/166 (70.48%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRATTDRNSARGGSQVGGRHGGMNDAPL---TNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYD 666
GK+F+GG++W+TTED L++HFGK+GAL D LM++K TG+PRGFGFV F ++ D L+E HVIDGRT++VKRA+PRD+ AP P + RGG GG HGG + + K FVGGL V + DFR YF ++GK+ DAVVM D+ T RSRGFG +T++
Sbjct: 126 GKLFIGGVSWETTEDGLRSHFGKYGALTDAALMKDKFTGQPRGFGFVTFADASVIDRVLEEAHVIDGRTVEVKRAIPRDKTAPAP------SEHRGGGSGGG-HGGYGRSGTFMESKKXFVGGLAPSVTEQDFRQYFEEYGKITDAVVMIDRDTQRSRGFGXVTFE 284
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI) HSP 1 Score: 176 bits (446), Expect = 7.970e-49 Identity = 89/185 (48.11%), Postives = 120/185 (64.86%), Query Frame = 1
Query: 136 AKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
A ++H++ DVEGK+F+GG++WQTTE+ L+ HFGK+G L D+ LM++K TG PRGFGF++F+ T D L +EH IDG+ +DVKRAVP+ AP P + + R + TNKIFVGGL V A+FR YF FG V DAVVM+D++T RSRGFGF+T+ VV +
Sbjct: 135 AGSVAHDKDN--DVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAE------------------TNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDI 299
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A8K1C8M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8M2_PYTOL) HSP 1 Score: 175 bits (444), Expect = 1.120e-48 Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRATTDRNSARGGSQVGGRHGGMNDAPL---------TNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
GK+F+GG++W+TTED L+ HFGK+GAL D LM++K TG+PRGFGFV F +T+ D L+E HVIDGRT++VKRA+PRD+ AP P + GG +G + KIFVGGL V + DFR YF +FGK+ DAVVM D+ T RSRGFGF+T+D V +V
Sbjct: 99 GKLFIGGVSWETTEDSLRGHFGKYGALTDAALMKDKFTGQPRGFGFVTFADATAIDRVLEESHVIDGRTVEVKRAIPRDKTAPGP----------SDGRFGGGYGRXXXXXXXXXXXGYTESKKIFVGGLAPSVTEQDFRQYFEEFGKITDAVVMIDRDTQRSRGFGFVTFDEEGAVAEV 268
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: F0XVG7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVG7_AURAN) HSP 1 Score: 165 bits (418), Expect = 1.600e-48 Identity = 81/174 (46.55%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 169 ADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
A +GK+FLGG+ W T E+ L+ +FG++G + DV +MRNK TG RGFGFV + DA L +HV+DGR +D+K AVPRDRAP APL+NK FVGGL V D +FRGYF +FG++ D++VM D+ T RSRGFGF+TY P+ +V
Sbjct: 2 AGAQGKLFLGGIAWTTDEEALRHYFGQFGEIIDVAVMRNKATGVSRGFGFVTYARPGCVDAVLGRDHVLDGRRVDIKLAVPRDRAP--------------------------APLSNKFFVGGLPSAVADPEFRGYFEQFGQLTDSIVMVDRGTNRSRGFGFVTYADPEAANRV 149
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL) HSP 1 Score: 171 bits (434), Expect = 1.770e-48 Identity = 84/170 (49.41%), Postives = 118/170 (69.41%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
GK+F+GG++W+TTED L+ HFGK+GAL D LM++K TG+PRGFGFV F +++ D L+E H +DGR+++VKRA+PR+R P ++ R + G S G G+ + KIFVGGL + + DFR YF +FG++ DAVVM D+ T RSRGFGFIT++ V +V
Sbjct: 127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERT-APGSSEFRGARSGYSSNGXXXXGI--FTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEV 293
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.130e-48 Identity = 86/171 (50.29%), Postives = 112/171 (65.50%), Query Frame = 1
Query: 178 EGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
EGK+F+GG++WQTTED L+ +F K+G L DV +M++K TG+PRGFGFV F+ ++ + L + H +DGR +D KRAV R+ + PR GG +GG + KIFVGGL V + DFRGYF KFG + DAVVM D+ TGRSRGFGF+TYD VR V
Sbjct: 4 EGKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREESSAPR--------------GGGYGGE-----SKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDV 155
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Match: A0A225W0H2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0H2_9STRA) HSP 1 Score: 174 bits (440), Expect = 2.830e-48 Identity = 89/171 (52.05%), Postives = 119/171 (69.59%), Query Frame = 1
Query: 181 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQSSTSADAALKEEHVIDGRTIDVKRAVPRDR-APLPRATTDRNSARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDVVRKV 690
GK+F+GG++W+TTED L+ HFGK+G+L D LM++K TG+PRGFGFV F +++ D L E H +DGR+++VKRA+PR+R AP ++D S R G GG GG + KIFVGGL V + DFR YF +FGK+ DAVVM D+ T RSRGFGFIT++ V +V
Sbjct: 104 GKLFIGGVSWETTEDTLRQHFGKYGSLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDEAHTLDGRSVEVKRAIPRERTAP---GSSDFRSGRSGFGFGGG-GGFTEQ---KKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEV 267 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12018.1575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12018.1575.1 >prot_E-fasciculatus_F_contig12018.1575.1 ID=prot_E-fasciculatus_F_contig12018.1575.1|Name=mRNA_E-fasciculatus_F_contig12018.1575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp MVTDEDPANGATAEAEADTNGTAETNGTADVTAAADGAPAVEGEKAKELSback to top mRNA from alignment at E-fasciculatus_F_contig12018:138..3146- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12018.1575.1 ID=mRNA_E-fasciculatus_F_contig12018.1575.1|Name=mRNA_E-fasciculatus_F_contig12018.1575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3009bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12018:138..3146- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12018:138..3146- >mRNA_E-fasciculatus_F_contig12018.1575.1 ID=mRNA_E-fasciculatus_F_contig12018.1575.1|Name=mRNA_E-fasciculatus_F_contig12018.1575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12018:138..3146- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |