mRNA_E-fasciculatus_F_contig1200.1561.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1200.1561.1
Unique NamemRNA_E-fasciculatus_F_contig1200.1561.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 412 bits (1060), Expect = 1.780e-124
Identity = 218/226 (96.46%), Postives = 222/226 (98.23%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRSR 678
            DRLGVVFLLLLFLSLLCLTSLAAWRKQM LF+HERASGAYGAAAHLTAAAAVDALACRVLPP+LLALTVSPLAGLRPGGL GLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGR+LTDLG+L AVGG GLALALVFLKRSR
Sbjct: 1844 DRLGVVFLLLLFLSLLCLTSLAAWRKQMTLFVHERASGAYGAAAHLTAAAAVDALACRVLPPILLALTVSPLAGLRPGGLFGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRTLTDLGILAAVGGGGLALALVFLKRSR 2069          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A6H5L0D0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D0_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 1.840e-84
Identity = 149/225 (66.22%), Postives = 169/225 (75.11%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRS 675
             RLGVVF LLL LS LCLTSLA+W +QM+LF HER SGAYGA AHL  +   DAL CRVLPPVLLA TV PLAGLR G L GL  GLV FN+++A VLAACGAGA+S QEALA GCL VLFSALLSGFLV++DDLP  WG L W SPI  GFE+L+ NEFS YGA+F L+T I S       P+TGD IL CFGF +GR   D+G+L A+GGAGL LA   LKR+
Sbjct:  110 GRLGVVFFLLLLLSFLCLTSLASWVRQMSLFRHERESGAYGALAHLATSFLADALVCRVLPPVLLAATVRPLAGLRYGSLPGLCAGLVVFNVAVAAVLAACGAGARSPQEALAMGCLFVLFSALLSGFLVARDDLPGVWGGLLWASPIAHGFEALLINEFSEYGALFTLTTVI-SGVTASVGPLTGDSILSCFGFENGRFSMDMGLLAAIGGAGLLLAYALLKRA 333          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 5.210e-68
Identity = 141/225 (62.67%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRS 675
             RLGV+F LLL LS LCLTSLA+W +QM+LF HER SGAYGAAAHL  +   DAL CRVLPPVLLA TV PLAGLR G L  L  GLV FN+++A VLAACGAGA+S QEALA GCL VLFSALLSGFLV++DDLP  WG L W SPI  G           YGA+F L+T I S       P++GD IL CFGF +GR   D+G+LVA+GGAGL LA   LKR+
Sbjct: 1769 GRLGVIFFLLLLLSFLCLTSLASWVRQMSLFRHERESGAYGAAAHLATSFLADALVCRVLPPVLLAATVRPLAGLRYGSLPDLCVGLVVFNVAVAAVLAACGAGARSPQEALAMGCLFVLFSALLSGFLVARDDLPGVWGGLLWASPIAHG----------EYGALFTLTTVI-SGVTASVGPLSGDNILSCFGFENGRFSLDMGLLVAIGGAGLLLAYALLKRA 1982          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A7S0GPS2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GPS2_MICPS)

HSP 1 Score: 119 bits (298), Expect = 9.820e-25
Identity = 87/233 (37.34%), Postives = 121/233 (51.93%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLA--GVLAAC-----GAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRSR 678
            +RLG +F +LL+L+L+ L+SL  WR+   LFL ERA G YG  A+  +A   D L  RVLPP    LT   + GL  G  +     LV F L+L    V A C     GA AKS   A A   L  L + L  GFL++KD +P     +A LS +  G+E+LVANEF+     F L+    S+ +    P+ G+++L  FGF S R   D+  +     A  AL  + L+ + 
Sbjct:  143 NRLGALFFVLLYLTLMSLSSLPVWREDRLLFLRERADGVYGVDAYFISALLFDVLPMRVLPPFFFGLTTYAMIGLNEGTEVS----LVTFVLTLVFTNVCATCMCMAIGAAAKSVAVANAVASLCFLVATLFGGFLLNKDQIPWYVKWVAKLSFLNYGYEALVANEFANNPTTFTLTAAWNSSTLPDEVPVPGEKVLSTFGFDSDRMFFDILAVCTQAVAFAALCYLMLRNAE 371          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A250XNY5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNY5_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 3.060e-24
Identity = 88/227 (38.77%), Postives = 124/227 (54.63%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGG---LLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPM--TGDQILRCFGFSSGRSLTD--LGVLVAVGGAGLALALV 660
            +RLGV+F LLL+LSL+ L+SL  WR +  LFL ERA+G Y  +A+ TA    D L  RVLPP   AL   P  GL PG    +L     LV  N++ A +  A GA A S+  A   G L ++   L  GFL++K+ +P     ++ LS     +E+L  NEF  + A F  +  I S+ +    P+  TGD +L+ FGF     L+D  L V++A+   GLA  L+
Sbjct:  952 NRLGVLFFLLLYLSLMALSSLPIWRDERLLFLRERAAGLYQTSAYFTAVVMFDLLPLRVLPPTFFALITYPAVGLHPGCPSCILWFVFTLVGANVAAAAMCMAIGAAAPSNSVANMAGSLTLMLLLLFGGFLLNKEKVPVYSRWISSLSFFNYAYEALAVNEFHGFPADFSFTAPIDSSAL---PPLRITGDGVLKEFGFEQDAFLSDEVLLVILALTFCGLAYYLL 1175          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A8J4D5E3_9CHLO (ABC transporter domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D5E3_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 3.290e-24
Identity = 96/234 (41.03%), Postives = 129/234 (55.13%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLR--PGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAV-FRLSTKI--GSAP--IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLK-RSR 678
            DR G +F +LLFLSLL L+SL  WR +  LF+ ERASG YG AA+ TA    D L  RVLPP L +     + GLR  PG L      LV  N++ A    + GA   S   A   G L VL SAL  GFL+S+  +P   G LA LS +   FE+L+  EF+  GA  FR +  +  G+ P  + Y D +TGD++L+ FGF +    +D+G L+ +  A L    + L+ R R
Sbjct:  554 DRFGALFFMLLFLSLLSLSSLPVWRDEALLFMRERASGVYGTAAYFTAVVLWDVLPLRVLPPGLFSKLSYHMIGLRASPGSLGAHWLVLVVANITAAAANMSIGAAVGSVSLANMLGSLCVLISALFGGFLLSRSRMPRLVGWLADLSYVRYAFEALLIGEFA--GATGFRFTGYLEPGTPPEQVPYVD-VTGDEVLQTFGFRTDAWWSDVGALLLLMCAFLTSTFLLLRFRGR 784          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A150GKY4_GONPE (ABC2_membrane domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GKY4_GONPE)

HSP 1 Score: 115 bits (289), Expect = 5.340e-24
Identity = 96/235 (40.85%), Postives = 124/235 (52.77%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAAC-----GAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFS-PYGAVFRLSTKIGSAP--IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLK-RSR 678
            DR G +F +LLFLSLL L+SL  WR +  LF  ERASG YG AA+ TA    D L  RVLPP L  L   P+ GLR       A  L+   L+LA V AA      GA  +S   A   G L VL S L  GFL+S++ +P     +A LS +   FE L+  EF    G  F    + G+ P  + Y D +TGD++L+ FGF S   L D+G L+ +  A L    + L+ R R
Sbjct:  251 DRFGCLFFMLLFLSLLSLSSLPVWRDEALLFRRERASGVYGTAAYFTAVVLWDFLPLRVLPPALFTLVSYPMVGLRADPRSAAAHWLL---LTLANVTAAAANMSIGAAVESVSLANMIGSLCVLVSTLFGGFLLSRNRMPRLVAWVADLSYVRYAFECLLVGEFGGATGFRFTGYHQPGTPPDQVPYVD-VTGDEVLQTFGFRSDAWLRDVGCLLCLMVAFLTSTFLLLRYRGR 481          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A835W233_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W233_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 7.380e-24
Identity = 98/236 (41.53%), Postives = 128/236 (54.24%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGG----LVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAV-FRLST--KIGSAP--IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLK-RSR 678
            DR G +F +LLFLSLL L+SL  WR +  LF+ ERASG YG AA+ T+    D L  RVLPP L       + GLR  G    A G    LV  N++ A    + GA   S   A   G L VL S L  GFL+S+  +P     LA LS +   FE+L+  EF   GAV FR +   + G+ P  + Y D +TGDQ+L+ FGFS+   LTD+  L+A+  A L    + L+ R R
Sbjct: 1946 DRFGALFFMLLFLSLLSLSSLPVWRDEALLFMRERASGVYGTAAYFTSVVMWDVLPLRVLPPGLFTAVSYGMIGLRASGRA--AAGHWLVLVVANITAAAANMSIGAAVGSVALANMVGSLCVLTSTLFGGFLLSRARMPRLVAWLADLSYVRYAFEALLIGEFG--GAVGFRFTGYHQPGTPPDQVPYVD-VTGDQVLQTFGFSTDAWLTDVCGLLALMAAFLTTTFLLLRYRGR 2176          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A835XJI5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJI5_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 1.310e-23
Identity = 80/216 (37.04%), Postives = 117/216 (54.17%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGG---LLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGA 639
            +RLGV+F +LL+L+L+ L+SL  WR +  LF+ ERASG YG  A+  A    D L  RVLPP   AL   PL GL P     +L     LV+ N++ A +  A GAG+ S+  A   G L ++   L  GFL++KD +P+    L   S     +E+L  NEF  +   F  +  I ++ ++    ++GD +L+ FGF   R   D   L+A+G A
Sbjct:  952 NRLGVLFFMLLYLALMALSSLPIWRDEKLLFMRERASGVYGTPAYYAAVVLFDLLPMRVLPPTFFALATFPLVGLHPSCASCILWFIAILVSTNITAATLCMAVGAGSPSNAIANLVGSLGLMLLLLFGGFLLNKDAVPSYCSWLEAASFFNYAYEALAVNEFHHFPLDFTFTAPINTS-VLPPLRISGDGVLKEFGFDVDRFYADYAALLALGAA 1166          
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A7S0KF63_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KF63_MICPS)

HSP 1 Score: 115 bits (288), Expect = 2.130e-23
Identity = 82/219 (37.44%), Postives = 118/219 (53.88%), Query Frame = 1
Query:    1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLA---GGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLA 648
            +R+G +F +LL+L+L+ L+SL  WR+   LFL ERA+G YG  A+  +    D L  RVLPP    L    + GL  G    LA     L+A N+  + +  A GA A+S   A     L  L + L  GFL++KD +PA    +  LS I  G+E+LV+NEF+     F L++   S+ +    P+ G+++L  FGF +GR   DL  LV    AG A
Sbjct:  122 NRMGSLFFVLLYLTLMSLSSLPVWREDRLLFLRERANGVYGVNAYFASMLLFDLLPMRVLPPFFFGLMTYQMVGLNEGTEYCLAWFVATLIATNVCASCMCMAVGAAARSVAAANVIASLCFLAAILFGGFLLNKDQIPAYASWVNNLSFINYGYEALVSNEFADNPRTFTLTSGWNSSTLPNEVPVPGEKVLSTFGFRAGRVARDL-CLVCAQAAGFA 339          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKD9_9PHAE1.780e-12496.46ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5L0D0_9PHAE1.840e-8466.22ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LNV5_ECTSI5.210e-6862.67ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
A0A7S0GPS2_MICPS9.820e-2537.34Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A250XNY5_9CHLO3.060e-2438.77Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A8J4D5E3_9CHLO3.290e-2441.03ABC transporter domain-containing protein n=2 Tax=... [more]
A0A150GKY4_GONPE5.340e-2440.85ABC2_membrane domain-containing protein n=1 Tax=Go... [more]
A0A835W233_9CHLO7.380e-2441.53Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835XJI5_9CHLO1.310e-2337.04Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S0KF63_MICPS2.130e-2337.44Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1200contigE-fasciculatus_F_contig1200:17114..19417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue2e-98
Seed eggNOG ortholog2880.D8LNU0
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size1654
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1200.1561.1prot_E-fasciculatus_F_contig1200.1561.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1200 18087..19336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.6623628-UTR-E-fasciculatus_F_contig1200:17113..180861622927709.6623628-UTR-E-fasciculatus_F_contig1200:17113..18086Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1200 17114..18086 -
1695995660.6681528-UTR-E-fasciculatus_F_contig1200:17113..180861695995660.6681528-UTR-E-fasciculatus_F_contig1200:17113..18086Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1200 17114..18086 -
1622927709.7017605-UTR-E-fasciculatus_F_contig1200:19336..194171622927709.7017605-UTR-E-fasciculatus_F_contig1200:19336..19417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1200 19337..19417 -
1695995660.7118332-UTR-E-fasciculatus_F_contig1200:19336..194171695995660.7118332-UTR-E-fasciculatus_F_contig1200:19336..19417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1200 19337..19417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.6763122-CDS-E-fasciculatus_F_contig1200:18086..182851622927709.6763122-CDS-E-fasciculatus_F_contig1200:18086..18285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 18087..18285 -
1695995660.6813004-CDS-E-fasciculatus_F_contig1200:18086..182851695995660.6813004-CDS-E-fasciculatus_F_contig1200:18086..18285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 18087..18285 -
1622927709.6890616-CDS-E-fasciculatus_F_contig1200:18935..193361622927709.6890616-CDS-E-fasciculatus_F_contig1200:18935..19336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 18936..19336 -
1695995660.6941483-CDS-E-fasciculatus_F_contig1200:18935..193361695995660.6941483-CDS-E-fasciculatus_F_contig1200:18935..19336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1200 18936..19336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1200.1561.1

>prot_E-fasciculatus_F_contig1200.1561.1 ID=prot_E-fasciculatus_F_contig1200.1561.1|Name=mRNA_E-fasciculatus_F_contig1200.1561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=200bp
MALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRP
GGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSG
FLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAP
IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRSR*
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mRNA from alignment at E-fasciculatus_F_contig1200:17114..19417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1200.1561.1 ID=mRNA_E-fasciculatus_F_contig1200.1561.1|Name=mRNA_E-fasciculatus_F_contig1200.1561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1200:17114..19417- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCGGCTGGGCGTGGTGTTCCTCCTGCTCCTCTTCCTCTCCCTGCTCTG CCTCACCTCCCTCGCGGCGTGGCGGAAGCAGATGGCCCTCTTCTTGCACG AGCGGGCCTCGGGCGCCTACGGCGCGGCCGCCCACCTGACCGCCGCCGCC GCCGTCGACGCCCTCGCCTGCCGCGTCCTACCCCCCGTCCTCCTCGCCCT TACCGTAAGCCCCCTCGCCGGGCTGCGCCCGGGAGGGCTCCTCGGCCTCG CGGGCGGCCTGGTGGCCTTCAACCTGTCCCTTGCCGGGGTCCTCGCCGCC TGCGGCGCCGGCGCCAAGTCGTCTCAGGAGGCGCTGGCGACGGGGTGCCT GGTGGTGCTGTTCTCGGCGCTGCTGTCCGGGTTCCTCGTGTCGAAGGACG ACCTGCCCGCGGCGTGGGGGGCGCTGGCGTGGCTGTCGCCGATCGGGAGG GGCTTCGAGTCGCTCGTCGCAAACGAGTTTAGGTGAGGGAGAATAAATGT TGGCAGGGGCGAGTTGTGTAAGAGGAGGAGGGAGGCTTGGTGAGGAGGTT TCACGGCTCTGTTTTGTGACAGAACGAACGGAAAAGCACGCGGTGCTTTT TTTGTTTTGTTTCGTTTATGACCATACAAGGAATCGTGAGCGAAACGGGG CGAGGAAACGAAAAGGGGAAGCAGGAAGGATGCAGCTCCTATACACCAGA AAAAAAGCCGGCATTTCGACGGCCGACAACACCACCCGCTGAAGCCGACT ACTCTTGCCACGATATGATATTCTCTAGCCGCCGCAACACTGGATGATGG ATGATGGATGCACCAGCCAAGCATGAAGTGACTCAAGAGCAACAGCAGCG AACGGTGCAAGCGAGACTCTCTGTCTACTAGCCGGTTGCTTCTGATTCAT GCTTAGCGCGAAGAATACAAAAATCCCCCACGTCACGATAATAAACCGAT TTGCCTGATAGAAACCGATTGGCACGACTATACCCGATTGTCAGTGTCCG TCTACCGTTTCAACCGTTTCTCACTCTCGGAAGCCTCTCCGCCGTTCTGC CTTCCGCCGCCTCCGTCCCCTTCCCCTTTTCTGTGCCCCTCTCTTGTAAT ATTTCTTTTCTTGTATTGCTTTTCGGAAATAGCCCGTACGGTGCGGTGTT CCGGCTGTCGACCAAGATTGGATCGGCTCCAATCGTGTACACCGACCCCA TGACGGGGGACCAGATTCTCCGCTGCTTCGGGTTTAGCAGCGGCCGCTCC CTGACCGATCTCGGAGTCCTGGTGGCGGTGGGCGGGGCAGGGCTTGCGCT GGCGCTTGTGTTCCTGAAGCGTTCTCGATGAAAAGAAGTGATGATGGTCG CATAGCTTCCCCTCCCCTTGGTCAAGGATTTTGTTAATTGTTGCGTTGCA TATGTATTGGCTGTGTTTTGATGGGTGTTGAGTCATGTTCGTCGTTGTTG ATGACCTTTTTCGAAGTTGGTGGTCGTTGTCGATGTTGACGACCTTTTTT CGATGTTGGTGAACGTGTTGATGTTTACGACCTTTTTTCGATGTTGACGA ACGAACGCGTCGATGTTGGACGACCTTTTTCGATGCTGATAACCGTGTTC GATGGGTGGCCAGCGTGAAAAGCACAATTCGACCATTTTGACCGTGTGGG GTACAGGCACGTGCGGTATTGGAACAACACCGACAGGTCTTTCCGAAATC CGTTGGCCTTGATCGGTTCTCGAAAAACGTGGGCACCTTGGTATGGCTAG AGATTGGACCATATTGAGCGTTTTCTCTCGGTGCTACGAGAGCTGAAGGT TCGATCGCCAAGATTCCATTCACTCCTTTCGCATCCATTGGTATATGTAG TCCACGAGCTCGTGCGGAGTTGTGATTCTGTCACTGTAGCTGGAACATAT GATTTGCGTCCTTTTGGTCAATTGAATCACTTCTGGGCGTGTTGTTTTTT TCTCTCCTATTATCGACTCTGTCGTGTGTGACTGCTTCCACTCACTCGCG GTGAACCTCCTCAAACCACACATGCACATCTTGGTAAAAATCTCGTGTGC ATGCACCTAAACTGCATATGTACATCTTCTTGGTTGAAGTCGTGTGCATG GACATAGACTGCTTTGTTGTTGTGTGGGTCCGGGGTGTGGAGGGTAGAGA ATACCATCGAACGTGGTGTTGACAACACTTTTTGTAGAGGGTTTGGGTGT GGAGGATTCACGTAGATAGAATACAAGGTAACGTTGCGGTGTCAAGACTT GAAAGCATCTCCGAGGCGATCTATGCCAGTGGCAACCACTCTGTTGTTTT CGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1200:17114..19417-

>mRNA_E-fasciculatus_F_contig1200.1561.1 ID=mRNA_E-fasciculatus_F_contig1200.1561.1|Name=mRNA_E-fasciculatus_F_contig1200.1561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1200:17114..19417- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCTCTTCTTGCACGAGCGGGCCTCGGGCGCCTACGGCGCGGCCGC
CCACCTGACCGCCGCCGCCGCCGTCGACGCCCTCGCCTGCCGCGTCCTAC
CCCCCGTCCTCCTCGCCCTTACCGTAAGCCCCCTCGCCGGGCTGCGCCCG
GGAGGGCTCCTCGGCCTCGCGGGCGGCCTGGTGGCCTTCAACCTGTCCCT
TGCCGGGGTCCTCGCCGCCTGCGGCGCCGGCGCCAAGTCGTCTCAGGAGG
CGCTGGCGACGGGGTGCCTGGTGGTGCTGTTCTCGGCGCTGCTGTCCGGG
TTCCTCGTGTCGAAGGACGACCTGCCCGCGGCGTGGGGGGCGCTGGCGTG
GCTGTCGCCGATCGGGAGGGGCTTCGAGTCGCTCGTCGCAAACGAGTTTA
GATGGCCCTCTTCTTGCACGAGCGGGCCTCGGGCGCCTACGGCGCGGCCG
CCCACCTGACCGCCGCCGCCGCCGTCGACGCCCTCGCCTGCCGCGTCCTA
CCCCCCGTCCTCCTCGCCCTTACCGTAAGCCCCCTCGCCGGGCTGCGCCC
GGGAGGGCTCCTCGGCCTCGCGGGCGGCCTGGTGGCCTTCAACCTGTCCC
TTGCCGGGGTCCTCGCCGCCTGCGGCGCCGGCGCCAAGTCGTCTCAGGAG
GCGCTGGCGACGGGGTGCCTGGTGGTGCTGTTCTCGGCGCTGCTGTCCGG
GTTCCTCGTGTCGAAGGACGACCTGCCCGCGGCGTGGGGGGCGCTGGCGT
GGCTGTCGCCGATCGGGAGGGGCTTCGAGTCGCTCGTCGCAAACGAGTTT
AGCCCGTACGGTGCGGTGTTCCGGCTGTCGACCAAGATTGGATCGGCTCC
AATCGTGTACACCGACCCCATGACGGGGGACCAGATTCTCCGCTGCTTCG
GGTTTAGCAGCGGCCGCTCCCTGACCGATCTCGGAGTCCTGGTGGCGGTG
GGCGGGGCAGGGCTTGCGCTGGCGCTTGTGTTCCTGAAGCGTTCTCGATG
ACCCGTACGGTGCGGTGTTCCGGCTGTCGACCAAGATTGGATCGGCTCCA
ATCGTGTACACCGACCCCATGACGGGGGACCAGATTCTCCGCTGCTTCGG
GTTTAGCAGCGGCCGCTCCCTGACCGATCTCGGAGTCCTGGTGGCGGTGG
GCGGGGCAGGGCTTGCGCTGGCGCTTGTGTTCCTGAAGCGTTCTCGATGA
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