mRNA_E-fasciculatus_F_contig1200.1561.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE) HSP 1 Score: 412 bits (1060), Expect = 1.780e-124 Identity = 218/226 (96.46%), Postives = 222/226 (98.23%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRSR 678
DRLGVVFLLLLFLSLLCLTSLAAWRKQM LF+HERASGAYGAAAHLTAAAAVDALACRVLPP+LLALTVSPLAGLRPGGL GLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGR+LTDLG+L AVGG GLALALVFLKRSR
Sbjct: 1844 DRLGVVFLLLLFLSLLCLTSLAAWRKQMTLFVHERASGAYGAAAHLTAAAAVDALACRVLPPILLALTVSPLAGLRPGGLFGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRTLTDLGILAAVGGGGLALALVFLKRSR 2069
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A6H5L0D0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D0_9PHAE) HSP 1 Score: 275 bits (702), Expect = 1.840e-84 Identity = 149/225 (66.22%), Postives = 169/225 (75.11%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRS 675
RLGVVF LLL LS LCLTSLA+W +QM+LF HER SGAYGA AHL + DAL CRVLPPVLLA TV PLAGLR G L GL GLV FN+++A VLAACGAGA+S QEALA GCL VLFSALLSGFLV++DDLP WG L W SPI GFE+L+ NEFS YGA+F L+T I S P+TGD IL CFGF +GR D+G+L A+GGAGL LA LKR+
Sbjct: 110 GRLGVVFFLLLLLSFLCLTSLASWVRQMSLFRHERESGAYGALAHLATSFLADALVCRVLPPVLLAATVRPLAGLRYGSLPGLCAGLVVFNVAVAAVLAACGAGARSPQEALAMGCLFVLFSALLSGFLVARDDLPGVWGGLLWASPIAHGFEALLINEFSEYGALFTLTTVI-SGVTASVGPLTGDSILSCFGFENGRFSMDMGLLAAIGGAGLLLAYALLKRA 333
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI) HSP 1 Score: 249 bits (636), Expect = 5.210e-68 Identity = 141/225 (62.67%), Postives = 161/225 (71.56%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRS 675
RLGV+F LLL LS LCLTSLA+W +QM+LF HER SGAYGAAAHL + DAL CRVLPPVLLA TV PLAGLR G L L GLV FN+++A VLAACGAGA+S QEALA GCL VLFSALLSGFLV++DDLP WG L W SPI G YGA+F L+T I S P++GD IL CFGF +GR D+G+LVA+GGAGL LA LKR+
Sbjct: 1769 GRLGVIFFLLLLLSFLCLTSLASWVRQMSLFRHERESGAYGAAAHLATSFLADALVCRVLPPVLLAATVRPLAGLRYGSLPDLCVGLVVFNVAVAAVLAACGAGARSPQEALAMGCLFVLFSALLSGFLVARDDLPGVWGGLLWASPIAHG----------EYGALFTLTTVI-SGVTASVGPLSGDNILSCFGFENGRFSLDMGLLVAIGGAGLLLAYALLKRA 1982
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A7S0GPS2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GPS2_MICPS) HSP 1 Score: 119 bits (298), Expect = 9.820e-25 Identity = 87/233 (37.34%), Postives = 121/233 (51.93%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLA--GVLAAC-----GAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLKRSR 678
+RLG +F +LL+L+L+ L+SL WR+ LFL ERA G YG A+ +A D L RVLPP LT + GL G + LV F L+L V A C GA AKS A A L L + L GFL++KD +P +A LS + G+E+LVANEF+ F L+ S+ + P+ G+++L FGF S R D+ + A AL + L+ +
Sbjct: 143 NRLGALFFVLLYLTLMSLSSLPVWREDRLLFLRERADGVYGVDAYFISALLFDVLPMRVLPPFFFGLTTYAMIGLNEGTEVS----LVTFVLTLVFTNVCATCMCMAIGAAAKSVAVANAVASLCFLVATLFGGFLLNKDQIPWYVKWVAKLSFLNYGYEALVANEFANNPTTFTLTAAWNSSTLPDEVPVPGEKVLSTFGFDSDRMFFDILAVCTQAVAFAALCYLMLRNAE 371
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A250XNY5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNY5_9CHLO) HSP 1 Score: 119 bits (297), Expect = 3.060e-24 Identity = 88/227 (38.77%), Postives = 124/227 (54.63%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGG---LLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPM--TGDQILRCFGFSSGRSLTD--LGVLVAVGGAGLALALV 660
+RLGV+F LLL+LSL+ L+SL WR + LFL ERA+G Y +A+ TA D L RVLPP AL P GL PG +L LV N++ A + A GA A S+ A G L ++ L GFL++K+ +P ++ LS +E+L NEF + A F + I S+ + P+ TGD +L+ FGF L+D L V++A+ GLA L+
Sbjct: 952 NRLGVLFFLLLYLSLMALSSLPIWRDERLLFLRERAAGLYQTSAYFTAVVMFDLLPLRVLPPTFFALITYPAVGLHPGCPSCILWFVFTLVGANVAAAAMCMAIGAAAPSNSVANMAGSLTLMLLLLFGGFLLNKEKVPVYSRWISSLSFFNYAYEALAVNEFHGFPADFSFTAPIDSSAL---PPLRITGDGVLKEFGFEQDAFLSDEVLLVILALTFCGLAYYLL 1175
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A8J4D5E3_9CHLO (ABC transporter domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D5E3_9CHLO) HSP 1 Score: 118 bits (295), Expect = 3.290e-24 Identity = 96/234 (41.03%), Postives = 129/234 (55.13%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLR--PGGLLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAV-FRLSTKI--GSAP--IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLK-RSR 678
DR G +F +LLFLSLL L+SL WR + LF+ ERASG YG AA+ TA D L RVLPP L + + GLR PG L LV N++ A + GA S A G L VL SAL GFL+S+ +P G LA LS + FE+L+ EF+ GA FR + + G+ P + Y D +TGD++L+ FGF + +D+G L+ + A L + L+ R R
Sbjct: 554 DRFGALFFMLLFLSLLSLSSLPVWRDEALLFMRERASGVYGTAAYFTAVVLWDVLPLRVLPPGLFSKLSYHMIGLRASPGSLGAHWLVLVVANITAAAANMSIGAAVGSVSLANMLGSLCVLISALFGGFLLSRSRMPRLVGWLADLSYVRYAFEALLIGEFA--GATGFRFTGYLEPGTPPEQVPYVD-VTGDEVLQTFGFRTDAWWSDVGALLLLMCAFLTSTFLLLRFRGR 784
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A150GKY4_GONPE (ABC2_membrane domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GKY4_GONPE) HSP 1 Score: 115 bits (289), Expect = 5.340e-24 Identity = 96/235 (40.85%), Postives = 124/235 (52.77%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGGLVAFNLSLAGVLAAC-----GAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFS-PYGAVFRLSTKIGSAP--IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLK-RSR 678
DR G +F +LLFLSLL L+SL WR + LF ERASG YG AA+ TA D L RVLPP L L P+ GLR A L+ L+LA V AA GA +S A G L VL S L GFL+S++ +P +A LS + FE L+ EF G F + G+ P + Y D +TGD++L+ FGF S L D+G L+ + A L + L+ R R
Sbjct: 251 DRFGCLFFMLLFLSLLSLSSLPVWRDEALLFRRERASGVYGTAAYFTAVVLWDFLPLRVLPPALFTLVSYPMVGLRADPRSAAAHWLL---LTLANVTAAAANMSIGAAVESVSLANMIGSLCVLVSTLFGGFLLSRNRMPRLVAWVADLSYVRYAFECLLVGEFGGATGFRFTGYHQPGTPPDQVPYVD-VTGDEVLQTFGFRSDAWLRDVGCLLCLMVAFLTSTFLLLRYRGR 481
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A835W233_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W233_9CHLO) HSP 1 Score: 117 bits (294), Expect = 7.380e-24 Identity = 98/236 (41.53%), Postives = 128/236 (54.24%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLAGG----LVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAV-FRLST--KIGSAP--IVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLALALVFLK-RSR 678
DR G +F +LLFLSLL L+SL WR + LF+ ERASG YG AA+ T+ D L RVLPP L + GLR G A G LV N++ A + GA S A G L VL S L GFL+S+ +P LA LS + FE+L+ EF GAV FR + + G+ P + Y D +TGDQ+L+ FGFS+ LTD+ L+A+ A L + L+ R R
Sbjct: 1946 DRFGALFFMLLFLSLLSLSSLPVWRDEALLFMRERASGVYGTAAYFTSVVMWDVLPLRVLPPGLFTAVSYGMIGLRASGRA--AAGHWLVLVVANITAAAANMSIGAAVGSVALANMVGSLCVLTSTLFGGFLLSRARMPRLVAWLADLSYVRYAFEALLIGEFG--GAVGFRFTGYHQPGTPPDQVPYVD-VTGDQVLQTFGFSTDAWLTDVCGLLALMAAFLTTTFLLLRYRGR 2176
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A835XJI5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJI5_9CHLO) HSP 1 Score: 117 bits (292), Expect = 1.310e-23 Identity = 80/216 (37.04%), Postives = 117/216 (54.17%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGG---LLGLAGGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGA 639
+RLGV+F +LL+L+L+ L+SL WR + LF+ ERASG YG A+ A D L RVLPP AL PL GL P +L LV+ N++ A + A GAG+ S+ A G L ++ L GFL++KD +P+ L S +E+L NEF + F + I ++ ++ ++GD +L+ FGF R D L+A+G A
Sbjct: 952 NRLGVLFFMLLYLALMALSSLPIWRDEKLLFMRERASGVYGTPAYYAAVVLFDLLPMRVLPPTFFALATFPLVGLHPSCASCILWFIAILVSTNITAATLCMAVGAGSPSNAIANLVGSLGLMLLLLFGGFLLNKDAVPSYCSWLEAASFFNYAYEALAVNEFHHFPLDFTFTAPINTS-VLPPLRISGDGVLKEFGFDVDRFYADYAALLALGAA 1166
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Match: A0A7S0KF63_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KF63_MICPS) HSP 1 Score: 115 bits (288), Expect = 2.130e-23 Identity = 82/219 (37.44%), Postives = 118/219 (53.88%), Query Frame = 1
Query: 1 DRLGVVFLLLLFLSLLCLTSLAAWRKQMALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPGGLLGLA---GGLVAFNLSLAGVLAACGAGAKSSQEALATGCLVVLFSALLSGFLVSKDDLPAAWGALAWLSPIGRGFESLVANEFSPYGAVFRLSTKIGSAPIVYTDPMTGDQILRCFGFSSGRSLTDLGVLVAVGGAGLA 648
+R+G +F +LL+L+L+ L+SL WR+ LFL ERA+G YG A+ + D L RVLPP L + GL G LA L+A N+ + + A GA A+S A L L + L GFL++KD +PA + LS I G+E+LV+NEF+ F L++ S+ + P+ G+++L FGF +GR DL LV AG A
Sbjct: 122 NRMGSLFFVLLYLTLMSLSSLPVWREDRLLFLRERANGVYGVNAYFASMLLFDLLPMRVLPPFFFGLMTYQMVGLNEGTEYCLAWFVATLIATNVCASCMCMAVGAAARSVAAANVIASLCFLAAILFGGFLLNKDQIPAYASWVNNLSFINYGYEALVSNEFADNPRTFTLTSGWNSSTLPNEVPVPGEKVLSTFGFRAGRVARDL-CLVCAQAAGFA 339 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1200.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1200.1561.1 >prot_E-fasciculatus_F_contig1200.1561.1 ID=prot_E-fasciculatus_F_contig1200.1561.1|Name=mRNA_E-fasciculatus_F_contig1200.1561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=200bp MALFLHERASGAYGAAAHLTAAAAVDALACRVLPPVLLALTVSPLAGLRPback to top mRNA from alignment at E-fasciculatus_F_contig1200:17114..19417- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1200.1561.1 ID=mRNA_E-fasciculatus_F_contig1200.1561.1|Name=mRNA_E-fasciculatus_F_contig1200.1561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1200:17114..19417- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1200:17114..19417- >mRNA_E-fasciculatus_F_contig1200.1561.1 ID=mRNA_E-fasciculatus_F_contig1200.1561.1|Name=mRNA_E-fasciculatus_F_contig1200.1561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1200:17114..19417- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |