mRNA_E-fasciculatus_F_contig12.1555.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI) HSP 1 Score: 248 bits (634), Expect = 1.470e-73 Identity = 140/164 (85.37%), Postives = 145/164 (88.41%), Query Frame = 2
Query: 1406 VMVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFVEWTVGEVDERLRVVPGSETDRSTDVXXXXXXXXXXXXXXXXXXESVDRSL 1897
VMVRKVN+DLDIPLLSESRERRLIEK VD+I+PKVEPSMQAIMPDVYVRCIKKALDETE+IKNRRK ISTLLRGELSEPLTRQLNERVDCS IPEKWEGKVLK+VSNKVIDEFVEWTVGEVDERLRVVPGS DRSTDV XXXX ESVDRSL
Sbjct: 9 VMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERLRVVPGS--DRSTDVDRSMPEEESKMXXXXS--ESVDRSL 168
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI) HSP 1 Score: 129 bits (324), Expect = 7.550e-31 Identity = 65/113 (57.52%), Postives = 87/113 (76.99%), Query Frame = 2
Query: 1409 MVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFV 1747
++ VN D+DIPL+SE RERR IEK VD+ +P +EPS+ A+MP YV +K LDET + R+++++ LLRGEL+ PL+RQLNERVDCS IPE EGKVLKIV+ K+++E V
Sbjct: 47 VIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.170e-30 Identity = 63/113 (55.75%), Postives = 87/113 (76.99%), Query Frame = 2
Query: 1409 MVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFV 1747
++ VN D DIPL+SE RER +IEK VD+ +P +EPS+ A+MP Y+ +K ALDET + R++++S LLRGEL+ PL++QLNERVDCS IPE EGKVLK+V+ K+++E V
Sbjct: 10 VIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.430e-28 Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 2
Query: 1409 MVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFV 1747
++ VN D DIPLLSE ERR IE VD+ +P +EPS+ A+MP YV +K ALDET + R++ +S LLRGEL+ PL++QLNERVD S IPE EGKVLK+V+ K+++E V
Sbjct: 65 VIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A2V3J618_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J618_9FLOR) HSP 1 Score: 118 bits (295), Expect = 3.320e-27 Identity = 58/128 (45.31%), Postives = 89/128 (69.53%), Query Frame = 2
Query: 1403 QVMVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFVEWTVGEVDERLRV 1786
+V+ ++N + DIP L ES E R+I+ V++ + P +EP+++ I P YV CIK AL E + RR QIS +LR +L +PL QLN ++D ++IPE E +VL++ + K++DEFVEWTV E+DER+ +
Sbjct: 8 EVIKNRINAETDIPFLRESTEDRVIKSVIETLNPHIEPALRQICPTPYVDCIKIALTEGIPTEERRLQISAILREQLVDPLADQLNGKLDMALIPESMELRVLEVFAKKIVDEFVEWTVAEIDERMGI 135
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A1X6P3R0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R0_PORUM) HSP 1 Score: 100 bits (250), Expect = 4.360e-21 Identity = 51/113 (45.13%), Postives = 80/113 (70.80%), Query Frame = 2
Query: 1403 QVMVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDE 1741
+V+VRK NE++D+P +SE RE R IEKVV+R+ P++EP++ MP + V I+ LDE +S+K RR+++ L+ + +EPLT LNERVD + +PE+ E VL+ V +++ E
Sbjct: 8 EVVVRKANEEIDLPFVSERRESRAIEKVVERLNPELEPALLQFMPKINVEMIRLLLDERKSVKERRERLVDLVLEQAAEPLTAALNERVDVAFLPERAESVVLRKVVERMLKE 120 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12.1555.1 >prot_E-fasciculatus_F_contig12.1555.1 ID=prot_E-fasciculatus_F_contig12.1555.1|Name=mRNA_E-fasciculatus_F_contig12.1555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp MTGDTPHRNRCRLLVLTSHQTSSTDRQTDRQTDPPRCVLRFHRSIDQVMVback to top mRNA from alignment at E-fasciculatus_F_contig12:55351..59792- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12.1555.1 ID=mRNA_E-fasciculatus_F_contig12.1555.1|Name=mRNA_E-fasciculatus_F_contig12.1555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4442bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:55351..59792- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12:55351..59792- >mRNA_E-fasciculatus_F_contig12.1555.1 ID=mRNA_E-fasciculatus_F_contig12.1555.1|Name=mRNA_E-fasciculatus_F_contig12.1555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:55351..59792- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |