mRNA_E-fasciculatus_F_contig12.1555.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12.1555.1
Unique NamemRNA_E-fasciculatus_F_contig12.1555.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.470e-73
Identity = 140/164 (85.37%), Postives = 145/164 (88.41%), Query Frame = 2
Query: 1406 VMVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFVEWTVGEVDERLRVVPGSETDRSTDVXXXXXXXXXXXXXXXXXXESVDRSL 1897
            VMVRKVN+DLDIPLLSESRERRLIEK VD+I+PKVEPSMQAIMPDVYVRCIKKALDETE+IKNRRK ISTLLRGELSEPLTRQLNERVDCS IPEKWEGKVLK+VSNKVIDEFVEWTVGEVDERLRVVPGS  DRSTDV           XXXX   ESVDRSL
Sbjct:    9 VMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERLRVVPGS--DRSTDVDRSMPEEESKMXXXXS--ESVDRSL 168          
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 7.550e-31
Identity = 65/113 (57.52%), Postives = 87/113 (76.99%), Query Frame = 2
Query: 1409 MVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFV 1747
            ++  VN D+DIPL+SE RERR IEK VD+ +P +EPS+ A+MP  YV  +K  LDET +   R+++++ LLRGEL+ PL+RQLNERVDCS IPE  EGKVLKIV+ K+++E V
Sbjct:   47 VIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159          
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.170e-30
Identity = 63/113 (55.75%), Postives = 87/113 (76.99%), Query Frame = 2
Query: 1409 MVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFV 1747
            ++  VN D DIPL+SE RER +IEK VD+ +P +EPS+ A+MP  Y+  +K ALDET +   R++++S LLRGEL+ PL++QLNERVDCS IPE  EGKVLK+V+ K+++E V
Sbjct:   10 VIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122          
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.430e-28
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 2
Query: 1409 MVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFV 1747
            ++  VN D DIPLLSE  ERR IE  VD+ +P +EPS+ A+MP  YV  +K ALDET +   R++ +S LLRGEL+ PL++QLNERVD S IPE  EGKVLK+V+ K+++E V
Sbjct:   65 VIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177          
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A2V3J618_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J618_9FLOR)

HSP 1 Score: 118 bits (295), Expect = 3.320e-27
Identity = 58/128 (45.31%), Postives = 89/128 (69.53%), Query Frame = 2
Query: 1403 QVMVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDEFVEWTVGEVDERLRV 1786
            +V+  ++N + DIP L ES E R+I+ V++ + P +EP+++ I P  YV CIK AL E    + RR QIS +LR +L +PL  QLN ++D ++IPE  E +VL++ + K++DEFVEWTV E+DER+ +
Sbjct:    8 EVIKNRINAETDIPFLRESTEDRVIKSVIETLNPHIEPALRQICPTPYVDCIKIALTEGIPTEERRLQISAILREQLVDPLADQLNGKLDMALIPESMELRVLEVFAKKIVDEFVEWTVAEIDERMGI 135          
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Match: A0A1X6P3R0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R0_PORUM)

HSP 1 Score: 100 bits (250), Expect = 4.360e-21
Identity = 51/113 (45.13%), Postives = 80/113 (70.80%), Query Frame = 2
Query: 1403 QVMVRKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKKALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLKIVSNKVIDE 1741
            +V+VRK NE++D+P +SE RE R IEKVV+R+ P++EP++   MP + V  I+  LDE +S+K RR+++  L+  + +EPLT  LNERVD + +PE+ E  VL+ V  +++ E
Sbjct:    8 EVVVRKANEEIDLPFVSERRESRAIEKVVERLNPELEPALLQFMPKINVEMIRLLLDERKSVKERRERLVDLVLEQAAEPLTAALNERVDVAFLPERAESVVLRKVVERMLKE 120          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12.1555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G7I4_ECTSI1.470e-7385.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7I3_ECTSI7.550e-3157.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA3_9PHAE1.170e-3055.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD72_9PHAE8.430e-2855.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V3J618_9FLOR3.320e-2745.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P3R0_PORUM4.360e-2145.13Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12contigE-fasciculatus_F_contig12:55351..59792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_000410.1
Exons4
Model size2808
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12.1555.1prot_E-fasciculatus_F_contig12.1555.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12 56259..58528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.2381423-UTR-E-fasciculatus_F_contig12:55350..562581622927708.2381423-UTR-E-fasciculatus_F_contig12:55350..56258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 55351..56258 -
1695995660.0260684-UTR-E-fasciculatus_F_contig12:55350..562581695995660.0260684-UTR-E-fasciculatus_F_contig12:55350..56258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 55351..56258 -
1622927708.2993703-UTR-E-fasciculatus_F_contig12:58528..597921622927708.2993703-UTR-E-fasciculatus_F_contig12:58528..59792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 58529..59792 -
1695995660.0780554-UTR-E-fasciculatus_F_contig12:58528..597921695995660.0780554-UTR-E-fasciculatus_F_contig12:58528..59792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12 58529..59792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.2513134-CDS-E-fasciculatus_F_contig12:56258..564291622927708.2513134-CDS-E-fasciculatus_F_contig12:56258..56429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 56259..56429 -
1695995660.036434-CDS-E-fasciculatus_F_contig12:56258..564291695995660.036434-CDS-E-fasciculatus_F_contig12:56258..56429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 56259..56429 -
1622927708.2653236-CDS-E-fasciculatus_F_contig12:57109..571881622927708.2653236-CDS-E-fasciculatus_F_contig12:57109..57188Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 57110..57188 -
1695995660.053129-CDS-E-fasciculatus_F_contig12:57109..571881695995660.053129-CDS-E-fasciculatus_F_contig12:57109..57188Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 57110..57188 -
1622927708.276323-CDS-E-fasciculatus_F_contig12:57749..578481622927708.276323-CDS-E-fasciculatus_F_contig12:57749..57848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 57750..57848 -
1695995660.0619435-CDS-E-fasciculatus_F_contig12:57749..578481695995660.0619435-CDS-E-fasciculatus_F_contig12:57749..57848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 57750..57848 -
1622927708.2863429-CDS-E-fasciculatus_F_contig12:58241..585281622927708.2863429-CDS-E-fasciculatus_F_contig12:58241..58528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 58242..58528 -
1695995660.0699904-CDS-E-fasciculatus_F_contig12:58241..585281695995660.0699904-CDS-E-fasciculatus_F_contig12:58241..58528Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12 58242..58528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12.1555.1

>prot_E-fasciculatus_F_contig12.1555.1 ID=prot_E-fasciculatus_F_contig12.1555.1|Name=mRNA_E-fasciculatus_F_contig12.1555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp
MTGDTPHRNRCRLLVLTSHQTSSTDRQTDRQTDPPRCVLRFHRSIDQVMV
RKVNEDLDIPLLSESRERRLIEKVVDRILPKVEPSMQAIMPDVYVRCIKK
ALDETESIKNRRKQISTLLRGELSEPLTRQLNERVDCSVIPEKWEGKVLK
IVSNKVIDEFVEWTVGEVDERLRVVPGSETDRSTDVDRSMPEEESKAPEE
EEEPESVDRSL*
back to top

mRNA from alignment at E-fasciculatus_F_contig12:55351..59792-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12.1555.1 ID=mRNA_E-fasciculatus_F_contig12.1555.1|Name=mRNA_E-fasciculatus_F_contig12.1555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4442bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:55351..59792- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAAGCTTACCCGTGGAAGGAGCACTCGCTCGTCAAAAGCTTGTCAACA TGTTGAACGAAAGGCAGAGAGCTGTGAGTGCGTATACCAAAACCGTTGCC TAAGAGCTCGACGTTTTGGCAGCAACAAGTTAGGGTACAACAGCAGTAGC GCCCGAAAGGTGTCCGCTAACGTACTCGGTGTCCGCAGCTATGTATCCGT GCAATGCTAATGCTAACAGAGCAAGAAACTACGTACAGTCTGTTGCAGAT TGGTGTACTGGCGCTATTTATACTGCTGTATTTCAGCACTGTAATTGGCA CCCTCTTCGGAGTTGCTATTTAGCTGGGTGTACTTCCCCTCCCCCAATAG GTGACACTGCGTTTCCCATCATAATCATATGTCTCCTCATACTCCATGGA TGAATACAATACAACAGCACGTTGTGTTCTTCATTTTTGCGTACACATGT GCATGATGTGTGTGGTTTGGTTACTTTTCAGTTTTGGGGGGGAAAATAGG AAGATTGGAGCACAGCATTGGATTGTGGGGGAGGCAGTCAATACTCTGCA CTCCAATGTACCACAGGGGATGCCAGCACAACATAAGAACTTGAGAGAGA AATGCGGGCTTTTTTTTTGGACCGAAAAGTTGACCCCGCCCCTCACTAAC ACCTACCGGTATATCGCTTTGGTTTTCTCATAGAGGATGTGAAGCCGCGA GGGTTGCACAAACGACGACGAACAGAAGAGAAGATAAGAGGTTCCTGAGT GGTAGTGGCGCATTGTGTACCGAAAGTACCGGCGGCAGCAATGCAAATCC CCGCTCGCTGTTTTCAGGAAAGGGATGGGTTGCGGGTCGCCAGGTTTACG GATGGTCTTGATGGTTTTGCGCGCACGCCCTGGTGTCCCTGCTGATGATC TCCGGGGCCCGATTGCTGTGGAATTTTCGAGCGAATGGAGCTCACACAAG CCACCCCCAAGGCCTCTGCGTCGTGTAGACTGGGCAGTCGGTTTATGACA AGAGCACCAGTGTTGCCTCATGTTTTTCTTTATCTTCGTATAGCCGTGGG CTCCGGTGGCAGGTTTACCCAAGGTGACCGCCAGGCTGTCGAGGGGGTCC TATGCGTTCACGGCGTTGTGTGTGTATTATGTACAGTGTACACCTATTTT GTCGCAATCCCGGAATGAACACGAAAGCTCACACGTCGGTCGATCTAGGA TGTGAAATCGTTTAGTTTGTGGTACCGTTCTTCGAACTTCGAACAACCAT GTCCTGAACAATTGATGACAGGAGACACACCACATCGAAATCGTTGTCGC TTGTTGGTGCTCACTTCACATCAGACTTCCTCAACAGACAGACAGACAGA CAGACAGACAGACCCACCGCGCTGTGTCCTTCGGTTTCATCGATCAATCG ATCAGGTGATGGTTCGCAAGGTCAACGAAGACCTGGACATCCCCCTCTTG TCGGAGTCGCGAGAGAGACGGCTGATCGAGAAGGTCGTGGACCGGATCCT GCCCAAGGTGGAGCCGTCCATGCAAGCCATCATGCCGGACGTATACGTCA GGTGACCCGCGACACAGAAGGGGGGAACTAGGTCTCTCAATGCACTTGTC TGAGCGGGTGTAGAATGAGTGCAACGGAGGCCTAGAGCACATGGAACATG AAGGGAAGGGTCAAGCATAGGAAGGCCTGAACGGGTTGTGATATATCTAC CTGCTGAAATTGGTAAAGACAGAGCCGTGTTTTGTAGGCCAGTTGCCGAA GAAAGGCGAGCACGATTGAACAAGAAAGGACAATGCCGTACTTACCTCGA GTGGATAGAGCTGCGGCAAGGGTTGTGTCACGTTTGCGCGCAAGCATGAC CACCTCGAAAAGGAAAGACGGCTACCCCCAGCATGTCTTCTAACTATGTC TCGTTGTTGTTGGACTAAAATATTAATACTGCCACCGGGCACAGGTGCAT CAAGAAAGCCTTGGACGAGACTGAAAGCATTAAGAACAGGAGGAAGCAAA TCTCGACCCTCCTGCGTGGCGAGCTGTCGGAGCCTCTAACCAGGTGGGTG ATTGTTTGGGTTGTCGCTCTCGTTGCTGTCATTTTGGCTGTTTTTTTGGC CACATGGGCTAATTGAAAGGGTGTTCCAAACCCCCGTGGTCGATGCTACT ACAGCTGCTAGCTAGAACAGGAAATAATTGCGCACTTGTTTCAGCCTTGA GGTGTCCGCTCGGATCGAACGGTGCAGGTATGCCCTTGTCGCTGTTGCGA TTTGCGTTGCGATTGTGGAAGTCGTCGCGTTCATCGGCATTGTTCCTCGA CATGACATCTTGGTGCCACCCTTGACGTCATTTTCTCAAGCGGAAACTTC AATTTCCGATCCGATGCGACGATCTAGTCAAGAGCACATCCCAGCGGGTG AGACCGGTTTGACGAATTCCGTCGCACACAGCGGTGTACCACCCACGTCG TTGATTGTAGTTGCGAACCGACACAATCTCCGGATGTGGGAGATTCGTAC TTCGTTGATATAAGCTCGTGAATCGAGTGCCCTTGCCTCTGCTTGCGTTG TTGGCACCTGACCGTCCGTGCCGGTCCTTGTTGTGTTGTTTTTTGTCGTG GCAGACAACTCAATGAGCGCGTGGACTGCTCGGTCATCCCCGAGAAGTGG GAGGGCAAGGTGCTCAAGATCGTGTCAAACAAGGTGAGGCCGCGCATCGC ATCCACGACGACATCCACGCCACGCTGGCGTCGTCCCTTGATCACGACCT CTCTCTTGGGGTCACGAAACTCTATGTGACGCACAACCCGAGCGCCTGTA ACGGGCCAGTTTTTTTTTCATTTTTGTACAGCTGTTCGGGTCTACTGCGA CTCTAGCGATGCGTTGGTGATATCCGGTGTGCGCCGTCAACCGAACCCCG GCATTTTTGTCGCGCATTGTTTCGTTTTCCCCGCCAGCGTTGCCCGCATC GTGAAAGTGATGTTGCCCTTGATATATGCTCTAATCTTGAATCAGCCCCC CCCTTTTGGGTGTCGGTTGGGGAACTATTAATATATGTATGTTTTTGTAT CTTGAGTCCTGCCCTTCCTTCTCCTGAGTGACCGCAGAGAACGTCCGCGT ACATTGTACAGTACCAATCAAACGTGTCAGGGAATAGCCCCCTGTATTGC CTGATGCATGTGGGTTGTGTAGTAGCTGACCAGCGATGGAGATACTTGTT CGCGTGCTTGAGGCTGATCCACCTCGTTGACCTCTCGATTTTTCATCGAG TATTTTCTTGGTGTTGGTTTTTGTGGTGGGTGCGTTCGTTCGTTAATGGT GGCTCTGGGTTTGAGCGCCTGCCCTCCTAATCCCATCCCATGTGTGTACG AACCGCACCGTAGGTGATCGACGAGTTTGTGGAATGGACCGTTGGCGAAG TGGACGAGCGTCTCCGCGTCGTCCCGGGTTCGGAGACGGACAGGTCGACG GACGTGGACAGGTCGATGCCCGAAGAGGAGTCGAAGGCGCCGGAAGAGGA AGAGGAACCTGAATCTGTTGACAGATCTTTGTAAGGGAACCCCCGCAGCA GCTGTCGCCAAAGCGGAAACATCGCGGACGCGTGATTTATCCAGACAGAG CTTGTCGTTGACCCTACGTACAAGGCTTTGTCGATGGGCGGTGCAGTTAG AAGTGCGTGAATCTTGGTTACCGGGGGCATTTTGTTTGCGTTTGATTGGA CGACTTGCGTAGACAGGCAAATCACTGCAGTGTTGCTCAAGGCACAAAAA CCCGCGTCTATCTGTAGACCAGTGCTCCACTAATGTTCATGTAGAAAATA TGTCCAGACTGTTTTGCAAACCCCGGTTTGAAGACGACAAACCAATCTGG TTTTGCGTCAGCAGCGGGAGGAATTGATCCGTGCCGTGTTTCGAGGCTTG TTTCTGTCAGCCGGTGTTGTTCCCGCTTCAATGTCAATGTTGTTTGGACC CATTGGACCAAAGTTTGAAAGCTATGGACCTGCTATGCATGGAGCATGCT CAGGTCTTGGCTTACCGGGAAGGGCTCTCATTTTTTTTTTTTCGGGTGGG TCAGATCCTTCACTGCTGGTTTGTTGCAGGATGAGACCACTTGTCGGTCA AAGTCGGAGGACACGCACCATAGAGATGCTATTTTTCTAACTACGTCCGC CAATTTTGCAGGAGCCTTGATGAGTAGCCGAAGGCCAGTAGTGTAGGAGA AGGAAGAATTCGGTCATCCTGGGTCAGGTTTCGTCCGGTCTGAAGTTTTC GTTGATGCTGCCTAGACGTATTTTAAACAAGAACAACGTCTTTCTCCTCT CCTAATGAAGCGCTGTCTAGTCGGCAAGGCAACACGGCATGAACTCTGGT GTAGGCAACACGGCATGAACTCTGGTGTCCAGAAGCTATAGCACGCCTTG AAAAAATGACGCCCAGAGAAACGCGCAAGGACAAGAGCACGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12:55351..59792-

>mRNA_E-fasciculatus_F_contig12.1555.1 ID=mRNA_E-fasciculatus_F_contig12.1555.1|Name=mRNA_E-fasciculatus_F_contig12.1555.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12:55351..59792- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACAGGAGACACACCACATCGAAATCGTTGTCGCTTGTTGGTGCTCAC
TTCACATCAGACTTCCTCAACAGACAGACAGACAGACAGACAGACAGACC
CACCGCGCTGTGTCCTTCGGTTTCATCGATCAATCGATCAGGTGATGGTT
CGCAAGGTCAACGAAGACCTGGACATCCCCCTCTTGTCGGAGTCGCGAGA
GAGACGGCTGATCGAGAAGGTCGTGGACCGGATCCTGCCCAAGGTGGAGC
CGTCCATGCAAGCCATCATGCCGGACGTATACGTCAGATGACAGGAGACA
CACCACATCGAAATCGTTGTCGCTTGTTGGTGCTCACTTCACATCAGACT
TCCTCAACAGACAGACAGACAGACAGACAGACAGACCCACCGCGCTGTGT
CCTTCGGTTTCATCGATCAATCGATCAGGTGATGGTTCGCAAGGTCAACG
AAGACCTGGACATCCCCCTCTTGTCGGAGTCGCGAGAGAGACGGCTGATC
GAGAAGGTCGTGGACCGGATCCTGCCCAAGGTGGAGCCGTCCATGCAAGC
CATCATGCCGGACGTATACGTCAGGTGCATCAAGAAAGCCTTGGACGAGA
CTGAAAGCATTAAGAACAGGAGGAAGCAAATCTCGACCCTCCTGCGTGGC
GAGCTGTCGGAGCCTCTAACCAGGTGCATCAAGAAAGCCTTGGACGAGAC
TGAAAGCATTAAGAACAGGAGGAAGCAAATCTCGACCCTCCTGCGTGGCG
AGCTGTCGGAGCCTCTAACCAGACAACTCAATGAGCGCGTGGACTGCTCG
GTCATCCCCGAGAAGTGGGAGGGCAAGGTGCTCAAGATCGTGTCAAACAA
GACAACTCAATGAGCGCGTGGACTGCTCGGTCATCCCCGAGAAGTGGGAG
GGCAAGGTGCTCAAGATCGTGTCAAACAAGGTGATCGACGAGTTTGTGGA
ATGGACCGTTGGCGAAGTGGACGAGCGTCTCCGCGTCGTCCCGGGTTCGG
AGACGGACAGGTCGACGGACGTGGACAGGTCGATGCCCGAAGAGGAGTCG
AAGGCGCCGGAAGAGGAAGAGGAACCTGAATCTGTTGACAGATCTTTGTA
AGTGATCGACGAGTTTGTGGAATGGACCGTTGGCGAAGTGGACGAGCGTC
TCCGCGTCGTCCCGGGTTCGGAGACGGACAGGTCGACGGACGTGGACAGG
TCGATGCCCGAAGAGGAGTCGAAGGCGCCGGAAGAGGAAGAGGAACCTGA
ATCTGTTGACAGATCTTTGTAA
back to top