mRNA_E-fasciculatus_F_contig11986.1543.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 7.810e-22 Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
IG+G+CDAA NVASCGYDGGDCC CTC DGP+HLCADS+F+C++P+C DPA
Sbjct: 40 IGNGNCDAALNVASCGYDGGDCCSCTCNDGPLHLCADSDFDCMYPDCGDPA 90
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 2.280e-17 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPEC 141
IG+G CDA NV SCGYDGGDCCPCTC DGP H C+ S+F+C++P+C
Sbjct: 36 IGNGQCDAVLNVPSCGYDGGDCCPCTCVDGPTHSCSTSDFDCMYPDC 82
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 2.830e-16 Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVD 147
IG+G CDA NN SCG+DGGDCC CTCTD ++ CAD+EF+C++P C D
Sbjct: 36 IGNGRCDAENNSPSCGFDGGDCCSCTCTDTVLYSCADNEFDCLYPLCGD 84
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 2.450e-15 Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVD 147
IG+G CDA NV SCGYDGGDCC CTC DGP++ C++ F+C++P+C D
Sbjct: 39 IGNGRCDAELNVPSCGYDGGDCCSCTCVDGPLYWCSEGTFDCLYPDCGD 87
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A2D9P508_9BACT (Dockerin domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D9P508_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11 Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
+GDG+CDA NNV +CGYD GDCCP C DGP + C D C CVDP+
Sbjct: 888 VGDGYCDAINNVEACGYDSGDCCPGDCVDGPSYSCEDVGGTCAT--CVDPS 936
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A2E1MIS1_9BACT (Dockerin domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MIS1_9BACT) HSP 1 Score: 65.1 bits (157), Expect = 5.360e-11 Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
+GDG+CDA NNV +CGYD GDCCP C DGP + C D C CVDP+
Sbjct: 1260 LGDGYCDAINNVEACGYDSGDCCPGDCVDGPSYSCEDVGGTCAT--CVDPS 1308
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 3.110e-9 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCT-DGPVHLCADSEFNCVFPECVDPA 153
IG+G CD ANN+ +CGYDGGDCC CTC + P D +++C+ C+DP+
Sbjct: 199 IGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCMEFACIDPS 250
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 3.360e-8 Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFP--ECVD 147
+GDG+CD N A CGYDGGDCC CTC + C + C+ P ECV+
Sbjct: 47 VGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAAECVN 97
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 5.210e-8 Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
+GDG CD NN +CGYDGGDCC CTC + D ++ C+ C+DP+
Sbjct: 425 VGDGWCDQGNNNEACGYDGGDCCECTCENE-----RDEDYRCMEFSCIDPS 470
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 7.110e-8 Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 1 IGDGHCDAANNVASCGYDGGDCCPCTCT-DGPVHLCADSEFNCVFPECVDP 150
+GDG CD NN +CGYDGGDCC CTC + P D +++C C+DP
Sbjct: 99 VGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDP 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11986.1543.1 >prot_E-fasciculatus_F_contig11986.1543.1 ID=prot_E-fasciculatus_F_contig11986.1543.1|Name=mRNA_E-fasciculatus_F_contig11986.1543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=51bp IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPback to top mRNA from alignment at E-fasciculatus_F_contig11986:3541..3693+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11986.1543.1 ID=mRNA_E-fasciculatus_F_contig11986.1543.1|Name=mRNA_E-fasciculatus_F_contig11986.1543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11986:3541..3693+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11986:3541..3693+ >mRNA_E-fasciculatus_F_contig11986.1543.1 ID=mRNA_E-fasciculatus_F_contig11986.1543.1|Name=mRNA_E-fasciculatus_F_contig11986.1543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11986:3541..3693+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |