mRNA_E-fasciculatus_F_contig11986.1543.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11986.1543.1
Unique NamemRNA_E-fasciculatus_F_contig11986.1543.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.810e-22
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
            IG+G+CDAA NVASCGYDGGDCC CTC DGP+HLCADS+F+C++P+C DPA
Sbjct:   40 IGNGNCDAALNVASCGYDGGDCCSCTCNDGPLHLCADSDFDCMYPDCGDPA 90          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.280e-17
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPEC 141
            IG+G CDA  NV SCGYDGGDCCPCTC DGP H C+ S+F+C++P+C
Sbjct:   36 IGNGQCDAVLNVPSCGYDGGDCCPCTCVDGPTHSCSTSDFDCMYPDC 82          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.830e-16
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVD 147
            IG+G CDA NN  SCG+DGGDCC CTCTD  ++ CAD+EF+C++P C D
Sbjct:   36 IGNGRCDAENNSPSCGFDGGDCCSCTCTDTVLYSCADNEFDCLYPLCGD 84          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-15
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVD 147
            IG+G CDA  NV SCGYDGGDCC CTC DGP++ C++  F+C++P+C D
Sbjct:   39 IGNGRCDAELNVPSCGYDGGDCCSCTCVDGPLYWCSEGTFDCLYPDCGD 87          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A2D9P508_9BACT (Dockerin domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D9P508_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
            +GDG+CDA NNV +CGYD GDCCP  C DGP + C D    C    CVDP+
Sbjct:  888 VGDGYCDAINNVEACGYDSGDCCPGDCVDGPSYSCEDVGGTCAT--CVDPS 936          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A2E1MIS1_9BACT (Dockerin domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MIS1_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 5.360e-11
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
            +GDG+CDA NNV +CGYD GDCCP  C DGP + C D    C    CVDP+
Sbjct: 1260 LGDGYCDAINNVEACGYDSGDCCPGDCVDGPSYSCEDVGGTCAT--CVDPS 1308          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.110e-9
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCT-DGPVHLCADSEFNCVFPECVDPA 153
            IG+G CD ANN+ +CGYDGGDCC CTC  + P     D +++C+   C+DP+
Sbjct:  199 IGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCMEFACIDPS 250          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.360e-8
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFP--ECVD 147
            +GDG+CD   N A CGYDGGDCC CTC     + C    + C+ P  ECV+
Sbjct:   47 VGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAAECVN 97          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.210e-8
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDPA 153
            +GDG CD  NN  +CGYDGGDCC CTC +       D ++ C+   C+DP+
Sbjct:  425 VGDGWCDQGNNNEACGYDGGDCCECTCENE-----RDEDYRCMEFSCIDPS 470          
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.110e-8
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 IGDGHCDAANNVASCGYDGGDCCPCTCT-DGPVHLCADSEFNCVFPECVDP 150
            +GDG CD  NN  +CGYDGGDCC CTC  + P     D +++C    C+DP
Sbjct:   99 VGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDP 149          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11986.1543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC0_ECTSI7.810e-2276.47Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G5Y7_ECTSI2.280e-1768.09Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G300_ECTSI2.830e-1663.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI2.450e-1561.22Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A2D9P508_9BACT3.920e-1156.86Dockerin domain-containing protein (Fragment) n=1 ... [more]
A0A2E1MIS1_9BACT5.360e-1156.86Dockerin domain-containing protein n=1 Tax=Candida... [more]
D7G3F4_ECTSI3.110e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L262_9PHAE3.360e-849.02LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JM92_9PHAE5.210e-847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB04_9PHAE7.110e-849.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11986contigE-fasciculatus_F_contig11986:3541..3693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue7.6e-18
Seed eggNOG ortholog2880.D8LSC0
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-09_004230.4
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.8714516-CDS-E-fasciculatus_F_contig11986:3540..36931622927706.8714516-CDS-E-fasciculatus_F_contig11986:3540..3693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11986 3541..3693 +
1695995659.2481732-CDS-E-fasciculatus_F_contig11986:3540..36931695995659.2481732-CDS-E-fasciculatus_F_contig11986:3540..3693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11986 3541..3693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11986.1543.1prot_E-fasciculatus_F_contig11986.1543.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11986 3541..3693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11986.1543.1

>prot_E-fasciculatus_F_contig11986.1543.1 ID=prot_E-fasciculatus_F_contig11986.1543.1|Name=mRNA_E-fasciculatus_F_contig11986.1543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=51bp
IGDGHCDAANNVASCGYDGGDCCPCTCTDGPVHLCADSEFNCVFPECVDP
A
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mRNA from alignment at E-fasciculatus_F_contig11986:3541..3693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11986.1543.1 ID=mRNA_E-fasciculatus_F_contig11986.1543.1|Name=mRNA_E-fasciculatus_F_contig11986.1543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11986:3541..3693+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGGCGACGGGCACTGTGATGCTGCCAACAACGTCGCCTCGTGCGGCTA CGACGGGGGGGATTGTTGTCCTTGTACCTGCACTGACGGCCCGGTTCACC TCTGCGCCGACAGCGAGTTCAACTGCGTGTTTCCCGAATGCGTCGACCCA GCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11986:3541..3693+

>mRNA_E-fasciculatus_F_contig11986.1543.1 ID=mRNA_E-fasciculatus_F_contig11986.1543.1|Name=mRNA_E-fasciculatus_F_contig11986.1543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11986:3541..3693+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGGCGACGGGCACTGTGATGCTGCCAACAACGTCGCCTCGTGCGGCTA
CGACGGGGGGGATTGTTGTCCTTGTACCTGCACTGACGGCCCGGTTCACC
TCTGCGCCGACAGCGAGTTCAACTGCGTGTTTCCCGAATGCGTCGACCCA
GCAATCGGCGACGGGCACTGTGATGCTGCCAACAACGTCGCCTCGTGCGG
CTACGACGGGGGGGATTGTTGTCCTTGTACCTGCACTGACGGCCCGGTTC
ACCTCTGCGCCGACAGCGAGTTCAACTGCGTGTTTCCCGAATGCGTCGAC
CCAGCA
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