mRNA_E-fasciculatus_F_contig11858.1456.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11858.1456.1
Unique NamemRNA_E-fasciculatus_F_contig11858.1456.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.100e-17
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 PVYERSRAIRGYVLGLEHPDVAKAF---VLPHMQHRHE--TIFSLS-LAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
            P+YERS+AIR  +LG EHPDVA++    V+ H+  R E  T F LS L+ +FQGKY+EA PLY+RSL I EK  G DHP VA +LNN   LL 
Sbjct:  299 PLYERSQAIREKMLGPEHPDVAQSLNNRVVEHLFLRIEVSTSFDLSCLSFMFQGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLS 391          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.390e-16
Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 PVYERSRAIRGYVLGLEHPDVAKAF---------VLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVL 255
            P+Y R+  I    LG EHP +A A          V PH      +  +  + + FQGKYEEAGPLYERSL IREK LG DHP VA SLNN A+L
Sbjct:  743 PLYRRATEIWETALGPEHPQMATALNNRAGLLSNVPPHSLSSFHSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    4 VYERSRAIRGYVLGLEHPDVAKAF----VLPHMQHR--------------HETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLESKVR 273
            +YERS AIR   LG +HPDVA++     +L   Q R                 + + +L +  QG Y+EAG LYERSL IREK LG DHP VA SLNN A+LLES+VR
Sbjct:  220 LYERSLAIREKALGPDHPDVAQSLNKWALLLESQVRAIRIPGSFLWYPIDSGVLNNRALLLKAQGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLESQVR 327          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.710e-14
Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 PVYERSRAIRGYVLGLEHPDVAK-----AFVLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLES 264
            P+Y R +AI+  VLG +HP +A      A +L         + S  L V FQGK EEAG L+ RSL IREK LG DHP VA SLNN++ LLES
Sbjct:   29 PLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQDVPTFAMTSSRLPVTFQGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.040e-14
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 PVYERSRAIRGYVLGLEHPDVAK------AFVLPHMQHRHETIFSLSLAVI------------FQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLES 264
            P+Y R +AI+  VLG EHP +A       A +   +    ET+FS   + I            FQGK EEAGPL +RSL I+E+ LG DHP VA SLNN+  LLES
Sbjct: 1909 PLYARCQAIQETVLGPEHPRLATTLSNWAALLYEQVTIAPETLFSACCSAIGPPMTPSRLPFPFQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLES 2014          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.410e-13
Identity = 48/92 (52.17%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 PVYERSRAIRGYVLGLEHPDVAKAF-----VLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
            P+YER +AI    LG EHP+VA A      +L     R +T FS  L V FQGKYEEA PLY  SL I EK  G DH  VA  LNN A LL 
Sbjct:   38 PLYERWQAIFETALGPEHPNVATALNNRAGLLE--DQRRQTNFSPPLPVTFQGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLLS 127          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.530e-11
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    4 VYERSRAIRGYVLGLEHPDVAKAFV----LPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
            +Y  S +I     G +HP++A        L   QH HE  FSL+  V  QGKY+ A PLY RSL IREK  G DHP VA SLNN A  L 
Sbjct:  347 IYRHSMSILKKTHGPDHPEIATGLNNWAGLLSSQH-HEANFSLAFRVPCQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLR 435          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.230e-8
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 PVYERSRAIRGYVLGLEHPDVAKAFVLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
            P++ +S  IR   LG EHPDVA++  L ++     +  S++        +++A PLYERSL I EK  G DHP VA  LNN A L E
Sbjct:   71 PLHRQSLGIREKTLGPEHPDVAES--LNNLAGVLRSQASVNPVFEILRNFQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAALYE 155          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 56.2 bits (134), Expect = 2.420e-8
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:  139 QGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMA 249
            QGKYEEA PLY+R+L IRE  LG DHP VA +LNN+A
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40          
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: UPI0003735E06 (tetratricopeptide repeat-containing protein n=1 Tax=Prochlorothrix hollandica TaxID=1223 RepID=UPI0003735E06)

HSP 1 Score: 58.2 bits (139), Expect = 3.100e-8
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1
Query:  142 GKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLES 264
            G+YEEA PLY+RSL IRE+ LG++HP  A SLNN+AVL ES
Sbjct:    3 GRYEEALPLYQRSLAIREQELGANHPDTATSLNNLAVLYES 43          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY6_9PHAE3.100e-1755.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE7.390e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE1.390e-1548.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPL8_9PHAE6.710e-1450.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN5_9PHAE8.040e-1445.28CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K5H9_9PHAE3.410e-1352.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9V8_9PHAE1.530e-1147.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LI51_9PHAE1.230e-842.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295282.420e-870.27tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
UPI0003735E063.100e-868.29tetratricopeptide repeat-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11858contigE-fasciculatus_F_contig11858:2591..2905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927697.0521045-CDS-E-fasciculatus_F_contig11858:2590..29051622927697.0521045-CDS-E-fasciculatus_F_contig11858:2590..2905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11858 2591..2905 +
1695995654.0381188-CDS-E-fasciculatus_F_contig11858:2590..29051695995654.0381188-CDS-E-fasciculatus_F_contig11858:2590..2905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11858 2591..2905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11858.1456.1prot_E-fasciculatus_F_contig11858.1456.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11858 2591..2905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11858.1456.1

>prot_E-fasciculatus_F_contig11858.1456.1 ID=prot_E-fasciculatus_F_contig11858.1456.1|Name=mRNA_E-fasciculatus_F_contig11858.1456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
PVYERSRAIRGYVLGLEHPDVAKAFVLPHMQHRHETIFSLSLAVIFQGKY
EEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLESKVRPTLLAILLL
SLSLY
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mRNA from alignment at E-fasciculatus_F_contig11858:2591..2905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11858.1456.1 ID=mRNA_E-fasciculatus_F_contig11858.1456.1|Name=mRNA_E-fasciculatus_F_contig11858.1456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=315bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11858:2591..2905+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGTGTATGAACGTTCACGAGCCATACGAGGGTACGTTCTGGGCTTGGA GCATCCGGATGTCGCCAAGGCATTTGTTCTCCCGCACATGCAGCATCGTC ACGAAACGATTTTCTCTCTTTCCCTTGCCGTCATTTTCCAGGGTAAGTAT GAGGAGGCTGGGCCTCTGTACGAGCGCTCGCTGACCATTCGAGAGAAAAC TCTCGGTTCGGATCATCCATACGTGGCCCATTCGCTCAACAACATGGCGG TGTTGTTGGAGAGCAAGGTGAGACCCACACTCTTGGCAATTCTACTTCTC TCTTTGTCTCTCTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11858:2591..2905+

>mRNA_E-fasciculatus_F_contig11858.1456.1 ID=mRNA_E-fasciculatus_F_contig11858.1456.1|Name=mRNA_E-fasciculatus_F_contig11858.1456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11858:2591..2905+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGTGTATGAACGTTCACGAGCCATACGAGGGTACGTTCTGGGCTTGGA
GCATCCGGATGTCGCCAAGGCATTTGTTCTCCCGCACATGCAGCATCGTC
ACGAAACGATTTTCTCTCTTTCCCTTGCCGTCATTTTCCAGGGTAAGTAT
GAGGAGGCTGGGCCTCTGTACGAGCGCTCGCTGACCATTCGAGAGAAAAC
TCTCGGTTCGGATCATCCATACGTGGCCCATTCGCTCAACAACATGGCGG
TGTTGTTGGAGAGCAAGGTGAGACCCACACTCTTGGCAATTCTACTTCTC
TCTTTGTCTCTCTACCCAGTGTATGAACGTTCACGAGCCATACGAGGGTA
CGTTCTGGGCTTGGAGCATCCGGATGTCGCCAAGGCATTTGTTCTCCCGC
ACATGCAGCATCGTCACGAAACGATTTTCTCTCTTTCCCTTGCCGTCATT
TTCCAGGGTAAGTATGAGGAGGCTGGGCCTCTGTACGAGCGCTCGCTGAC
CATTCGAGAGAAAACTCTCGGTTCGGATCATCCATACGTGGCCCATTCGC
TCAACAACATGGCGGTGTTGTTGGAGAGCAAGGTGAGACCCACACTCTTG
GCAATTCTACTTCTCTCTTTGTCTCTCTAC
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