mRNA_E-fasciculatus_F_contig11858.1456.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.100e-17 Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 1 PVYERSRAIRGYVLGLEHPDVAKAF---VLPHMQHRHE--TIFSLS-LAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
P+YERS+AIR +LG EHPDVA++ V+ H+ R E T F LS L+ +FQGKY+EA PLY+RSL I EK G DHP VA +LNN LL
Sbjct: 299 PLYERSQAIREKMLGPEHPDVAQSLNNRVVEHLFLRIEVSTSFDLSCLSFMFQGKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLS 391
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 7.390e-16 Identity = 47/94 (50.00%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 PVYERSRAIRGYVLGLEHPDVAKAF---------VLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVL 255
P+Y R+ I LG EHP +A A V PH + + + + FQGKYEEAGPLYERSL IREK LG DHP VA SLNN A+L
Sbjct: 743 PLYRRATEIWETALGPEHPQMATALNNRAGLLSNVPPHSLSSFHSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15 Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 4 VYERSRAIRGYVLGLEHPDVAKAF----VLPHMQHR--------------HETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLESKVR 273
+YERS AIR LG +HPDVA++ +L Q R + + +L + QG Y+EAG LYERSL IREK LG DHP VA SLNN A+LLES+VR
Sbjct: 220 LYERSLAIREKALGPDHPDVAQSLNKWALLLESQVRAIRIPGSFLWYPIDSGVLNNRALLLKAQGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLESQVR 327
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 6.710e-14 Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 1 PVYERSRAIRGYVLGLEHPDVAK-----AFVLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLES 264
P+Y R +AI+ VLG +HP +A A +L + S L V FQGK EEAG L+ RSL IREK LG DHP VA SLNN++ LLES
Sbjct: 29 PLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQDVPTFAMTSSRLPVTFQGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 8.040e-14 Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 1 PVYERSRAIRGYVLGLEHPDVAK------AFVLPHMQHRHETIFSLSLAVI------------FQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLES 264
P+Y R +AI+ VLG EHP +A A + + ET+FS + I FQGK EEAGPL +RSL I+E+ LG DHP VA SLNN+ LLES
Sbjct: 1909 PLYARCQAIQETVLGPEHPRLATTLSNWAALLYEQVTIAPETLFSACCSAIGPPMTPSRLPFPFQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLES 2014
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 3.410e-13 Identity = 48/92 (52.17%), Postives = 53/92 (57.61%), Query Frame = 1
Query: 1 PVYERSRAIRGYVLGLEHPDVAKAF-----VLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
P+YER +AI LG EHP+VA A +L R +T FS L V FQGKYEEA PLY SL I EK G DH VA LNN A LL
Sbjct: 38 PLYERWQAIFETALGPEHPNVATALNNRAGLLE--DQRRQTNFSPPLPVTFQGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLLS 127
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.530e-11 Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 4 VYERSRAIRGYVLGLEHPDVAKAFV----LPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
+Y S +I G +HP++A L QH HE FSL+ V QGKY+ A PLY RSL IREK G DHP VA SLNN A L
Sbjct: 347 IYRHSMSILKKTHGPDHPEIATGLNNWAGLLSSQH-HEANFSLAFRVPCQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLR 435
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.230e-8 Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1 PVYERSRAIRGYVLGLEHPDVAKAFVLPHMQHRHETIFSLSLAVIFQGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLE 261
P++ +S IR LG EHPDVA++ L ++ + S++ +++A PLYERSL I EK G DHP VA LNN A L E
Sbjct: 71 PLHRQSLGIREKTLGPEHPDVAES--LNNLAGVLRSQASVNPVFEILRNFQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAALYE 155
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528) HSP 1 Score: 56.2 bits (134), Expect = 2.420e-8 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 139 QGKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMA 249
QGKYEEA PLY+R+L IRE LG DHP VA +LNN+A
Sbjct: 4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Match: UPI0003735E06 (tetratricopeptide repeat-containing protein n=1 Tax=Prochlorothrix hollandica TaxID=1223 RepID=UPI0003735E06) HSP 1 Score: 58.2 bits (139), Expect = 3.100e-8 Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 142 GKYEEAGPLYERSLTIREKTLGSDHPYVAHSLNNMAVLLES 264
G+YEEA PLY+RSL IRE+ LG++HP A SLNN+AVL ES
Sbjct: 3 GRYEEALPLYQRSLAIREQELGANHPDTATSLNNLAVLYES 43 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11858.1456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11858.1456.1 >prot_E-fasciculatus_F_contig11858.1456.1 ID=prot_E-fasciculatus_F_contig11858.1456.1|Name=mRNA_E-fasciculatus_F_contig11858.1456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp PVYERSRAIRGYVLGLEHPDVAKAFVLPHMQHRHETIFSLSLAVIFQGKYback to top mRNA from alignment at E-fasciculatus_F_contig11858:2591..2905+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11858.1456.1 ID=mRNA_E-fasciculatus_F_contig11858.1456.1|Name=mRNA_E-fasciculatus_F_contig11858.1456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=315bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11858:2591..2905+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11858:2591..2905+ >mRNA_E-fasciculatus_F_contig11858.1456.1 ID=mRNA_E-fasciculatus_F_contig11858.1456.1|Name=mRNA_E-fasciculatus_F_contig11858.1456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11858:2591..2905+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |