mRNA_E-fasciculatus_F_contig11754.1385.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11754.1385.1
Unique NamemRNA_E-fasciculatus_F_contig11754.1385.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11754.1385.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 3.650e-114
Identity = 181/203 (89.16%), Postives = 183/203 (90.15%), Query Frame = 1 
Query:    1 MSVEDQIGPGSAVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVETASGSSTKTAVAARQVRYVVPGGSGYQAADLAAFEDIPEIDEGLMEEAWDMMLEESTAGSDGAAAVAA--NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGNYECRSREAVEQARRKLSQEDAVKVKKTDFVASLQAGLNEGG 603
            MS  DQIGPGS VVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVE ASGSSTKT VAARQVRYVVPGGSGYQA DLAAFED PEIDEGL+EEAWDMMLEESTAGSD         NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDG YECRSREAVE ARR+LSQEDAVK KK DFVASLQAGLNEGG
Sbjct:  101 MSAADQIGPGSVVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVEAASGSSTKTTVAARQVRYVVPGGSGYQAKDLAAFEDSPEIDEGLIEEAWDMMLEESTAGSDXXXXXXXXXNDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGG 303
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BLAST of mRNA_E-fasciculatus_F_contig11754.1385.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 7.770e-111
Identity = 181/205 (88.29%), Postives = 184/205 (89.76%), Query Frame = 1 
Query:    1 MSVEDQIGPGSAVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVETASGSSTKTAVAARQVRYVVPGGSGYQAADLAAFEDIPEIDEGLMEEAWDMMLEESTAGSDGAAAVAA----NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGNYECRSREAVEQARRKLSQEDAVKVKKTDFVASLQAGLNEGG 603
            MS  DQIGPGS VVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVE ASGSSTKT VAARQVRY+VPGGSGYQAADLAAFED PEIDEGL+EEAWDMMLEESTAGSD           NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDG YECRSREAVE ARR+LSQEDAVK KK DFVASLQAGLNEGG
Sbjct:    1 MSAADQIGPGSVVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVEAASGSSTKTTVAARQVRYIVPGGSGYQAADLAAFEDSPEIDEGLIEEAWDMMLEESTAGSDXXXXXXXXXXXNDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGG 205
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11754.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU3_9PHAE3.650e-11489.16RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLK7_ECTSI7.770e-11188.29COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11754contigE-fasciculatus_F_contig11754:3..926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score348.6
Seed ortholog evalue2e-93
Seed eggNOG ortholog2880.D8LLK7
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
Ec32 orthologEc-04_005440.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-04_005440.2
Exons2
Model size603
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927689.0571187-CDS-E-fasciculatus_F_contig11754:2..1081622927689.0571187-CDS-E-fasciculatus_F_contig11754:2..108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 3..108 -
1695995650.0819848-CDS-E-fasciculatus_F_contig11754:2..1081695995650.0819848-CDS-E-fasciculatus_F_contig11754:2..108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 3..108 -
1622927689.1236331-CDS-E-fasciculatus_F_contig11754:429..9261622927689.1236331-CDS-E-fasciculatus_F_contig11754:429..926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 430..926 -
1695995650.0927224-CDS-E-fasciculatus_F_contig11754:429..9261695995650.0927224-CDS-E-fasciculatus_F_contig11754:429..926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11754 430..926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11754.1385.1prot_E-fasciculatus_F_contig11754.1385.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11754 3..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11754.1385.1

>prot_E-fasciculatus_F_contig11754.1385.1 ID=prot_E-fasciculatus_F_contig11754.1385.1|Name=mRNA_E-fasciculatus_F_contig11754.1385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=201bp
MSVEDQIGPGSAVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVETAS
GSSTKTAVAARQVRYVVPGGSGYQAADLAAFEDIPEIDEGLMEEAWDMML
EESTAGSDGAAAVAANDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGT
LYFKRRRDGNYECRSREAVEQARRKLSQEDAVKVKKTDFVASLQAGLNEG
G
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mRNA from alignment at E-fasciculatus_F_contig11754:3..926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11754.1385.1 ID=mRNA_E-fasciculatus_F_contig11754.1385.1|Name=mRNA_E-fasciculatus_F_contig11754.1385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11754:3..926- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGTGGAGGATCAGATAGGTCCGGGATCGGCCGTGGTGTTCGACTC
AGACGTCAGGGGACGACCCCCAGCGCTTGGCCTGGTAACAGAGAGCAGCG
TCGGCAAGAAGAAGTTGACATATACGGTGCAGCCGGTGGAGACGGCGTCC
GGGAGCAGCACCAAGACGGCCGTCGCGGCGCGGCAAGTGCGATACGTCGT
CCCCGGCGGCAGCGGCTACCAGGCCGCCGACCTCGCGGCTTTCGAGGACA
TCCCAGAGATCGACGAGGGGCTCATGGAGGAGGCCTGGGATATGATGCTC
GAGGAAAGCACAGCGGGTAGCGACGGGGCGGCGGCGGTGGCCGCGAACGA
TGATCCCCGAGGCATGGCGGAGCTGCTGTTCGGCGTCGGGGACCCGTCGC
CACAGCAGTGCTACCACGCGTTCCGTCTGTTGGAAGGCAGGGATGGGACG
TTGTACTTCAAGCGAAGGCGGGACGGCAACTACGAGTGCCGATCGAGGTG
AGTGGAGGTTGTTGTAACAGGCCTGCGGGTGTGCGGGCTTCGATAAAGGC
GAAGAAATCGTGAGTTGCCGGGGAAGGACGGCAAGCTGTTGGGTGTGTGT
CGCAAGTAGCTCTGTAAGCGTCATGACGAGCACCGGAGAGGGGTGGTGGA
GCTGGTGCCGTGATCGTGCCCTCTGACGTTCTCCACGTGCACCCCCGTTC
CCGATCGCTGACTGTTGGCTTGTGCGGACTGCGGACGCTAGGGTAGGAAC
GGCACGCGCTGATGTTGCCACTGCTTTGTGTCCGTTTGGGATATAACATG
GTGCACCGCAAACACCAGGGAAGCGGTTGAGCAGGCACGCCGTAAGCTCA
GCCAGGAGGACGCGGTGAAGGTCAAGAAGACCGACTTTGTCGCCAGCCTA
CAGGCGGGGCTGAACGAGGGAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11754:3..926-

>mRNA_E-fasciculatus_F_contig11754.1385.1 ID=mRNA_E-fasciculatus_F_contig11754.1385.1|Name=mRNA_E-fasciculatus_F_contig11754.1385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11754:3..926- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGTGGAGGATCAGATAGGTCCGGGATCGGCCGTGGTGTTCGACTC
AGACGTCAGGGGACGACCCCCAGCGCTTGGCCTGGTAACAGAGAGCAGCG
TCGGCAAGAAGAAGTTGACATATACGGTGCAGCCGGTGGAGACGGCGTCC
GGGAGCAGCACCAAGACGGCCGTCGCGGCGCGGCAAGTGCGATACGTCGT
CCCCGGCGGCAGCGGCTACCAGGCCGCCGACCTCGCGGCTTTCGAGGACA
TCCCAGAGATCGACGAGGGGCTCATGGAGGAGGCCTGGGATATGATGCTC
GAGGAAAGCACAGCGGGTAGCGACGGGGCGGCGGCGGTGGCCGCGAACGA
TGATCCCCGAGGCATGGCGGAGCTGCTGTTCGGCGTCGGGGACCCGTCGC
CACAGCAGTGCTACCACGCGTTCCGTCTGTTGGAAGGCAGGGATGGGACG
TTGTACTTCAAGCGAAGGCGGGACGGCAACTACGAGTGCCGATCGAGATG
TCGGTGGAGGATCAGATAGGTCCGGGATCGGCCGTGGTGTTCGACTCAGA
CGTCAGGGGACGACCCCCAGCGCTTGGCCTGGTAACAGAGAGCAGCGTCG
GCAAGAAGAAGTTGACATATACGGTGCAGCCGGTGGAGACGGCGTCCGGG
AGCAGCACCAAGACGGCCGTCGCGGCGCGGCAAGTGCGATACGTCGTCCC
CGGCGGCAGCGGCTACCAGGCCGCCGACCTCGCGGCTTTCGAGGACATCC
CAGAGATCGACGAGGGGCTCATGGAGGAGGCCTGGGATATGATGCTCGAG
GAAAGCACAGCGGGTAGCGACGGGGCGGCGGCGGTGGCCGCGAACGATGA
TCCCCGAGGCATGGCGGAGCTGCTGTTCGGCGTCGGGGACCCGTCGCCAC
AGCAGTGCTACCACGCGTTCCGTCTGTTGGAAGGCAGGGATGGGACGTTG
TACTTCAAGCGAAGGCGGGACGGCAACTACGAGTGCCGATCGAGGGAAGC
GGTTGAGCAGGCACGCCGTAAGCTCAGCCAGGAGGACGCGGTGAAGGTCA
AGAAGACCGACTTTGTCGCCAGCCTACAGGCGGGGCTGAACGAGGGAGGT
GGAAGCGGTTGAGCAGGCACGCCGTAAGCTCAGCCAGGAGGACGCGGTGA
AGGTCAAGAAGACCGACTTTGTCGCCAGCCTACAGGCGGGGCTGAACGAG
GGAGGT
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