prot_E-fasciculatus_F_contig11754.1385.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig11754.1385.1
Unique Nameprot_E-fasciculatus_F_contig11754.1385.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length201
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11754.1385.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 3.650e-114
Identity = 181/203 (89.16%), Postives = 183/203 (90.15%), Query Frame = 0 
Query:    1 MSVEDQIGPGSAVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVETASGSSTKTAVAARQVRYVVPGGSGYQAADLAAFEDIPEIDEGLMEEAWDMMLEESTAGSDGAAAVAA--NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGNYECRSREAVEQARRKLSQEDAVKVKKTDFVASLQAGLNEGG 201
            MS  DQIGPGS VVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVE ASGSSTKT VAARQVRYVVPGGSGYQA DLAAFED PEIDEGL+EEAWDMMLEESTAGSD         NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDG YECRSREAVE ARR+LSQEDAVK KK DFVASLQAGLNEGG
Sbjct:  101 MSAADQIGPGSVVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVEAASGSSTKTTVAARQVRYVVPGGSGYQAKDLAAFEDSPEIDEGLIEEAWDMMLEESTAGSDXXXXXXXXXNDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGG 303
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BLAST of mRNA_E-fasciculatus_F_contig11754.1385.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 7.770e-111
Identity = 181/205 (88.29%), Postives = 184/205 (89.76%), Query Frame = 0 
Query:    1 MSVEDQIGPGSAVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVETASGSSTKTAVAARQVRYVVPGGSGYQAADLAAFEDIPEIDEGLMEEAWDMMLEESTAGSDGAAAVAA----NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGNYECRSREAVEQARRKLSQEDAVKVKKTDFVASLQAGLNEGG 201
            MS  DQIGPGS VVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVE ASGSSTKT VAARQVRY+VPGGSGYQAADLAAFED PEIDEGL+EEAWDMMLEESTAGSD           NDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDG YECRSREAVE ARR+LSQEDAVK KK DFVASLQAGLNEGG
Sbjct:    1 MSAADQIGPGSVVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVEAASGSSTKTTVAARQVRYIVPGGSGYQAADLAAFEDSPEIDEGLIEEAWDMMLEESTAGSDXXXXXXXXXXXNDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGG 205
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11754.1385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU3_9PHAE3.650e-11489.16RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLK7_ECTSI7.770e-11188.29COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11754contigE-fasciculatus_F_contig11754:3..926 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11754.1385.1mRNA_E-fasciculatus_F_contig11754.1385.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig11754 3..926 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig11754.1385.1 ID=prot_E-fasciculatus_F_contig11754.1385.1|Name=mRNA_E-fasciculatus_F_contig11754.1385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=201bp
MSVEDQIGPGSAVVFDSDVRGRPPALGLVTESSVGKKKLTYTVQPVETAS
GSSTKTAVAARQVRYVVPGGSGYQAADLAAFEDIPEIDEGLMEEAWDMML
EESTAGSDGAAAVAANDDPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGT
LYFKRRRDGNYECRSREAVEQARRKLSQEDAVKVKKTDFVASLQAGLNEG
G
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