mRNA_E-fasciculatus_F_contig1010.115.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: A0A6H5JEH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH8_9PHAE) HSP 1 Score: 514 bits (1325), Expect = 6.910e-178 Identity = 282/343 (82.22%), Postives = 297/343 (86.59%), Query Frame = 3 Query: 237 MGDVSNRRMRKGQLPSIQATGFRSPPTRVATRQARGSFGCLRRDNQERRLVGGRAVKQRGWSPRSSRLRGGQLNSREDEFVSGETLSREEFEAWSAAAAAAAD---PTGDGRGTSIVNG-------TAPVCVEEVYSSRASPTGINWYSILLSVVDQVLFLGFFAWLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGTQNWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFVAGHMKETTRPR 1235
MG VSN R+R QLPSI+ATGFRS PTRVATRQ R SFGCLRRD+QER L G RA++QRGWSPRS+ LRG QLNSR+DEFVSGE LSREEFEAWSAA PTGDGR T NG T VCVEEVYSSRASP GINW SILLSVVDQVLFLGFFAWLATP +REQLRSSFVLSFPGI LGAAGAVPMFVYGLYLGTQNWPWLKR E+KAAA+ K+LNLFG RR+QV RVA VSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLG+YVHCLLLSTRSILVPIVAHAVFDAILFV GH+KET RP+
Sbjct: 1 MGGVSNGRVRNDQLPSIEATGFRSQPTRVATRQERASFGCLRRDSQERGL-GARAIRQRGWSPRSNSLRGRQLNSRQDEFVSGEALSREEFEAWSAAXXXXXXXXXPTGDGRRTGSANGASDASDATTSVCVEEVYSSRASPAGINWTSILLSVVDQVLFLGFFAWLATPAIREQLRSSFVLSFPGIGLGAAGAVPMFVYGLYLGTQNWPWLKRHEQKAAADIKDLNLFG-RRRQVARVAVVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGMYVHCLLLSTRSILVPIVAHAVFDAILFVVGHLKETARPQ 341
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI) HSP 1 Score: 181 bits (459), Expect = 1.600e-48 Identity = 126/318 (39.62%), Postives = 177/318 (55.66%), Query Frame = 3 Query: 306 SPPTRVATRQARGSFGCLRRDNQERRLVGGRAVKQRG------------WSPRSSRLRGGQLNSREDEF-VSGETLSREEFEAWSAAAAAAADPTGDGRGTSIVNGTAPVCVEEVYSSRASPTGINWYSILLSVVDQVLFLGFFAWLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGTQ-NWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFVAGHMK 1217
SPP R + FG R+ R GG ++QR W+ RS L G +SR+ + LS EEFE A +A P+ DG S + S + TGINW ++ ++ Q LF G FA LA P MR Q++SS ++ G C+G G++P+F YGL+L T+ +W W+ R+ +A L LFG +RQ V +VAAVS+PL+MLV+ EEC +RGL+PL+L T LP AA+V +S +FCG HA +L ++A + G++ HCLLLST +I VP+VAHAV +A V H+K
Sbjct: 22 SPPIRFNPHASPNHFGTRRQRRAARARGGGYFLRQRAGICSRRRIRRWDWAVRSKDLPRGVSSSRDAASDQEDDVLSFEEFEK----ALLSAAPSRDGWYRSA---------DGAVDSAGARTGINWRLLVEDILVQPLFFGIFAVLAKPAMRGQVKSSLSVTLHGACVGILGSLPLFAYGLFLETRRDWGWV--RKAQATTERAVLKLFGSKRQ-VTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIK 323
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: D8LIG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG1_ECTSI) HSP 1 Score: 160 bits (405), Expect = 2.420e-40 Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 3 Query: 630 PTGINWYSILLSVVDQVLFLGFFAWLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGT-QNWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFVAGHMKET 1223
P GI+W +++ Q+ F+G F +A+ MREQ+ S+ ++S LG AG VP+ YGL L W W+++ ++ A + L LFG +RQ + +V V +PL+MLV LCEEC +RG +PL+L AKTGLP+AA+VG+SA G+ HA T+ + A + G++ H L LST +I VPIVAHAV+DAI V H+K T
Sbjct: 178 PPGISWVALVAVAATQLAFVGLFVLVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDE--ATSEVALQLFGSKRQ-LGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVT 373
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: A0A7V3JJQ3_9BACT (CPBP family intramembrane metalloprotease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JJQ3_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 9.790e-5 Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 3 Query: 702 WLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGTQNWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGI--SAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFV 1202
WL +R+ +R G GA G++P+ G+ PW R+ A + + LF R +V +A +S L L EE ++RG++ L G P +G+ SA+ G H+ T A+ A ++G Y+ L L+T ++L+PIVAHA++D ++ V
Sbjct: 32 WLLGYPLRDAIRWEAA----GWMAGALGSLPLL--GVMAAVVWVPWPPFRQLLATIDESIVPLF--RSCNLVDLALISA----LAGLGEEMLFRGVLQRALAGLAGDPAGPWLGLVASAMLFGIAHSVTRTYAMLATLIGAYLGLLWLATENLLIPIVAHALYDFLVLV 188 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1010.115.1 >prot_E-fasciculatus_F_contig1010.115.1 ID=prot_E-fasciculatus_F_contig1010.115.1|Name=mRNA_E-fasciculatus_F_contig1010.115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=383bp MLQEAMNTFILCCMLCSLPVLSLCPSTPPRKSVLRSTGTTAAADALAPSMback to top mRNA from alignment at E-fasciculatus_F_contig1010:755..4877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1010.115.1 ID=mRNA_E-fasciculatus_F_contig1010.115.1|Name=mRNA_E-fasciculatus_F_contig1010.115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:755..4877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1010:755..4877+ >mRNA_E-fasciculatus_F_contig1010.115.1 ID=mRNA_E-fasciculatus_F_contig1010.115.1|Name=mRNA_E-fasciculatus_F_contig1010.115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2298bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:755..4877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |