mRNA_E-fasciculatus_F_contig1010.115.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: A0A6H5JEH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH8_9PHAE) HSP 1 Score: 514 bits (1325), Expect = 6.910e-178 Identity = 282/343 (82.22%), Postives = 297/343 (86.59%), Query Frame = 3
Query: 237 MGDVSNRRMRKGQLPSIQATGFRSPPTRVATRQARGSFGCLRRDNQERRLVGGRAVKQRGWSPRSSRLRGGQLNSREDEFVSGETLSREEFEAWSAAAAAAAD---PTGDGRGTSIVNG-------TAPVCVEEVYSSRASPTGINWYSILLSVVDQVLFLGFFAWLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGTQNWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFVAGHMKETTRPR 1235
MG VSN R+R QLPSI+ATGFRS PTRVATRQ R SFGCLRRD+QER L G RA++QRGWSPRS+ LRG QLNSR+DEFVSGE LSREEFEAWSAA PTGDGR T NG T VCVEEVYSSRASP GINW SILLSVVDQVLFLGFFAWLATP +REQLRSSFVLSFPGI LGAAGAVPMFVYGLYLGTQNWPWLKR E+KAAA+ K+LNLFG RR+QV RVA VSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLG+YVHCLLLSTRSILVPIVAHAVFDAILFV GH+KET RP+
Sbjct: 1 MGGVSNGRVRNDQLPSIEATGFRSQPTRVATRQERASFGCLRRDSQERGL-GARAIRQRGWSPRSNSLRGRQLNSRQDEFVSGEALSREEFEAWSAAXXXXXXXXXPTGDGRRTGSANGASDASDATTSVCVEEVYSSRASPAGINWTSILLSVVDQVLFLGFFAWLATPAIREQLRSSFVLSFPGIGLGAAGAVPMFVYGLYLGTQNWPWLKRHEQKAAADIKDLNLFG-RRRQVARVAVVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGMYVHCLLLSTRSILVPIVAHAVFDAILFVVGHLKETARPQ 341
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI) HSP 1 Score: 181 bits (459), Expect = 1.600e-48 Identity = 126/318 (39.62%), Postives = 177/318 (55.66%), Query Frame = 3
Query: 306 SPPTRVATRQARGSFGCLRRDNQERRLVGGRAVKQRG------------WSPRSSRLRGGQLNSREDEF-VSGETLSREEFEAWSAAAAAAADPTGDGRGTSIVNGTAPVCVEEVYSSRASPTGINWYSILLSVVDQVLFLGFFAWLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGTQ-NWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFVAGHMK 1217
SPP R + FG R+ R GG ++QR W+ RS L G +SR+ + LS EEFE A +A P+ DG S + S + TGINW ++ ++ Q LF G FA LA P MR Q++SS ++ G C+G G++P+F YGL+L T+ +W W+ R+ +A L LFG +RQ V +VAAVS+PL+MLV+ EEC +RGL+PL+L T LP AA+V +S +FCG HA +L ++A + G++ HCLLLST +I VP+VAHAV +A V H+K
Sbjct: 22 SPPIRFNPHASPNHFGTRRQRRAARARGGGYFLRQRAGICSRRRIRRWDWAVRSKDLPRGVSSSRDAASDQEDDVLSFEEFEK----ALLSAAPSRDGWYRSA---------DGAVDSAGARTGINWRLLVEDILVQPLFFGIFAVLAKPAMRGQVKSSLSVTLHGACVGILGSLPLFAYGLFLETRRDWGWV--RKAQATTERAVLKLFGSKRQ-VTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIK 323
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: D8LIG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG1_ECTSI) HSP 1 Score: 160 bits (405), Expect = 2.420e-40 Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 3
Query: 630 PTGINWYSILLSVVDQVLFLGFFAWLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGT-QNWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFVAGHMKET 1223
P GI+W +++ Q+ F+G F +A+ MREQ+ S+ ++S LG AG VP+ YGL L W W+++ ++ A + L LFG +RQ + +V V +PL+MLV LCEEC +RG +PL+L AKTGLP+AA+VG+SA G+ HA T+ + A + G++ H L LST +I VPIVAHAV+DAI V H+K T
Sbjct: 178 PPGISWVALVAVAATQLAFVGLFVLVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDE--ATSEVALQLFGSKRQ-LGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVT 373
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Match: A0A7V3JJQ3_9BACT (CPBP family intramembrane metalloprotease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JJQ3_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 9.790e-5 Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 3
Query: 702 WLATPVMREQLRSSFVLSFPGICLGAAGAVPMFVYGLYLGTQNWPWLKRREKKAAANNKELNLFGGRRQQVVRVAAVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGI--SAVFCGARHAGTLGSAIDAAVLGVYVHCLLLSTRSILVPIVAHAVFDAILFV 1202
WL +R+ +R G GA G++P+ G+ PW R+ A + + LF R +V +A +S L L EE ++RG++ L G P +G+ SA+ G H+ T A+ A ++G Y+ L L+T ++L+PIVAHA++D ++ V
Sbjct: 32 WLLGYPLRDAIRWEAA----GWMAGALGSLPLL--GVMAAVVWVPWPPFRQLLATIDESIVPLF--RSCNLVDLALISA----LAGLGEEMLFRGVLQRALAGLAGDPAGPWLGLVASAMLFGIAHSVTRTYAMLATLIGAYLGLLWLATENLLIPIVAHALYDFLVLV 188 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1010.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1010.115.1 >prot_E-fasciculatus_F_contig1010.115.1 ID=prot_E-fasciculatus_F_contig1010.115.1|Name=mRNA_E-fasciculatus_F_contig1010.115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=383bp MLQEAMNTFILCCMLCSLPVLSLCPSTPPRKSVLRSTGTTAAADALAPSMback to top mRNA from alignment at E-fasciculatus_F_contig1010:755..4877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1010.115.1 ID=mRNA_E-fasciculatus_F_contig1010.115.1|Name=mRNA_E-fasciculatus_F_contig1010.115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4123bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:755..4877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1010:755..4877+ >mRNA_E-fasciculatus_F_contig1010.115.1 ID=mRNA_E-fasciculatus_F_contig1010.115.1|Name=mRNA_E-fasciculatus_F_contig1010.115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2298bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:755..4877+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |