mRNA_E-fasciculatus_F_contig11383.1111.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11383.1111.1
Unique NamemRNA_E-fasciculatus_F_contig11383.1111.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: A0A6H5KYH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.080e-20
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKR+
Sbjct:   10 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRT 53
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 8.360e-20
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKR+
Sbjct:  371 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRT 414
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: F0YJY9_AURAN (PRP1_N domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY9_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-13
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VVIDREQW+KEAE AE A APLTCGAIVR T+ IGVE EDRKR+
Sbjct:  511 VVIDREQWLKEAEAAELAAAPLTCGAIVRHTIGIGVENEDRKRT 554
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-13
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            V+ DRE W+KEAE AE A AP+TCGAIVRAT+H+GVE EDRKR+
Sbjct:  361 VINDREAWLKEAEAAESAGAPITCGAIVRATIHMGVEAEDRKRT 404
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: A0A1V9ZC51_9STRA (Pre-mRNA-processing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC51_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.610e-13
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            +VIDR+ W+KEAE  EQA+APLTC A+VR T++IGVEEEDRKR+
Sbjct:  657 IVIDRDTWLKEAEACEQAEAPLTCAALVRQTLNIGVEEEDRKRT 700
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: A0A7S3XY73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY73_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 6.750e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKR 129
            V IDREQW+KEAEEAE+  APLTCGA+VRA + +GVE EDRKR
Sbjct:  273 VEIDREQWLKEAEEAERGGAPLTCGAVVRAALPLGVEPEDRKR 315
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: A0A8J2SWX2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWX2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.210e-13
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VVIDRE W+KEAE AEQA APLTC A+VR T+ +GVE EDRKR+
Sbjct:  557 VVIDREAWLKEAESAEQAQAPLTCAAVVRHTIGLGVEVEDRKRT 600
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BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 1.720e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VV++RE W+KEAE  EQADAPLTC AIVRA++ +GVE EDRKR+
Sbjct:  512 VVMNREMWLKEAEACEQADAPLTCAAIVRASLDVGVEPEDRKRT 555
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 68.2 bits (165), Expect = 3.210e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VVI+RE W+KEAE  E ADAPLTC AIVRA + +GVE EDRKR+
Sbjct:  525 VVINREMWLKEAEACEHADAPLTCAAIVRACIDVGVEPEDRKRT 568
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Match: A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS 132
            VV++RE W+KEAE  EQADAPLTC AIVRA++ +GV+ EDRKR+
Sbjct:  517 VVMNREMWLKEAEACEQADAPLTCAAIVRASLDVGVDYEDRKRT 560
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11383.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH2_9PHAE7.080e-2097.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI8.360e-2097.73PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
F0YJY9_AURAN1.040e-1379.55PRP1_N domain-containing protein n=1 Tax=Aureococc... [more]
A0A835YM25_9STRA1.420e-1372.73PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A1V9ZC51_9STRA3.610e-1370.45Pre-mRNA-processing factor n=1 Tax=Thraustotheca c... [more]
A0A7S3XY73_HETAK6.750e-1374.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SWX2_9STRA9.210e-1372.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
H3GKT1_PHYRM1.720e-1270.45PRP1_N domain-containing protein n=24 Tax=Peronosp... [more]
K3WCC0_GLOUD3.210e-1270.45PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A3M6VD23_9STRA6.000e-1268.18PRP1_N domain-containing protein n=7 Tax=Peronospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11383contigE-fasciculatus_F_contig11383:4230..4361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue4.7e-16
Seed eggNOG ortholog2880.D7FHD2
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.8970547-CDS-E-fasciculatus_F_contig11383:4229..43611622927647.8970547-CDS-E-fasciculatus_F_contig11383:4229..4361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11383 4230..4361 +
1695995634.1786008-CDS-E-fasciculatus_F_contig11383:4229..43611695995634.1786008-CDS-E-fasciculatus_F_contig11383:4229..4361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11383 4230..4361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11383.1111.1prot_E-fasciculatus_F_contig11383.1111.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11383 4230..4361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11383.1111.1

>prot_E-fasciculatus_F_contig11383.1111.1 ID=prot_E-fasciculatus_F_contig11383.1111.1|Name=mRNA_E-fasciculatus_F_contig11383.1111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=44bp
VVIDREQWIKEAEEAEQADAPLTCGAIVRATVHIGVEEEDRKRS
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mRNA from alignment at E-fasciculatus_F_contig11383:4230..4361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11383.1111.1 ID=mRNA_E-fasciculatus_F_contig11383.1111.1|Name=mRNA_E-fasciculatus_F_contig11383.1111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=132bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11383:4230..4361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTGATCGACCGAGAGCAGTGGATCAAGGAAGCCGAGGAGGCAGAGCA
AGCGGATGCCCCCCTCACGTGCGGCGCAATCGTCCGCGCCACCGTTCACA
TCGGGGTCGAAGAGGAAGACAGGAAACGGTCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11383:4230..4361+

>mRNA_E-fasciculatus_F_contig11383.1111.1 ID=mRNA_E-fasciculatus_F_contig11383.1111.1|Name=mRNA_E-fasciculatus_F_contig11383.1111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11383:4230..4361+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTGATCGACCGAGAGCAGTGGATCAAGGAAGCCGAGGAGGCAGAGCA
AGCGGATGCCCCCCTCACGTGCGGCGCAATCGTCCGCGCCACCGTTCACA
TCGGGGTCGAAGAGGAAGACAGGAAACGGTCAGTGGTGATCGACCGAGAG
CAGTGGATCAAGGAAGCCGAGGAGGCAGAGCAAGCGGATGCCCCCCTCAC
GTGCGGCGCAATCGTCCGCGCCACCGTTCACATCGGGGTCGAAGAGGAAG
ACAGGAAACGGTCA
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