Homology
BLAST of mRNA_E-fasciculatus_F_contig101.111.1 vs. uniprot
Match: D7FLK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK8_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 2.140e-8 Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = 2 Query: 1019 SYSSSFFPLLSVVAVL------WTGYLMHYLRRLGVIEDI--RTFGEP--CRTKTFYLHAWKYLLAGSLLYATLLYVSPAPTAWRWALIVTHSLRAVKVLVSLRGQSCNAVEEGGGVADDV 1351
S+ S F + V V+ WT L H L R + I R F C T+ H +LLAG ++YA LL++SPAP+ W W+LIVTHS R + +L++LRG + G + V
Sbjct: 241 SHLSLVFSVFQVAVVIVIYFSCWTICLTHLLYRPFIKTAIYGRFFQWELICMTQPRCRHVRAFLLAGGMIYAVLLHLSPAPSKWTWSLIVTHSTRLLSLLIALRGDNEGVANAAGEIVAHV 361
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 1 |
Model size | 1683 |
Cds size | 732 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig101.111.1 >prot_E-fasciculatus_F_contig101.111.1 ID=prot_E-fasciculatus_F_contig101.111.1|Name=mRNA_E-fasciculatus_F_contig101.111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=244bp
MRKAVDLSDWDIILPLVVACTACAIWTGASHSLCTLRVQGAVDKIRSTND EESDRRLGRGRPAEPLDVDDGVHVDVFEYHDITTMSLHFLRAGLVWALVQ LFVIALCVVLIPWYLFLGQSTCQSWSWFSCQSYSSSFFPLLSVVAVLWTG YLMHYLRRLGVIEDIRTFGEPCRTKTFYLHAWKYLLAGSLLYATLLYVSP APTAWRWALIVTHSLRAVKVLVSLRGQSCNAVEEGGGVADDVL* back to topmRNA from alignment at E-fasciculatus_F_contig101:27988..29670+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig101.111.1 ID=mRNA_E-fasciculatus_F_contig101.111.1|Name=mRNA_E-fasciculatus_F_contig101.111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1683bp|location=Sequence derived from alignment at E-fasciculatus_F_contig101:27988..29670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GAAGCTTCTGCAGCCATACGCACTTTGGAGGTGGATCGTATCGACGTCTT
GAGGACGAAGAACTTTCTCTCAGACCTCGGTCCTCAGGTTAGTGGCGTCT
GTCTTCTACGTACGAGCGCATTTCCGCTGATCGGTTTGATGCAGACGAGC
GGAAGCCTCTCTGCTACCCAATAACGAATGAAGATTAAAGAACGGCTACA
CAAGTTTGGGGGTCAATCGATGGCCACAACCACGGTCCTAGCCACACTGT
CCGTCGGGAAGGAAGTGTTGCGAGAAAACACACTGGGGAATGAACCCAAA
CGACAATGTTAGGTTCTTCACAGCTGGGGGTGCTGGGGTTGGTGAGTGCT
GTGGCATTCATCACTAGCGCGAGGTAGGATATCGCGTGGCTCACCGGGGC
AGCAATGCTTCAGAGACCATACCCCAAAGCACGACCGTGGCTGAGGCGGG
AGAATGCATCGTTTGACGACGGCACTCACCTGGACGTAGCAAGAGCACAA
TGGTTGTTCACCACTGAATAAGCGATGTTTGTACTTGCTCCTTGTCTTTT
GCAGGCCGAAGCGCTGGAAGCACGTGTTTGTGCGTTGTGGAGGCCGTTCT
GTCAACTGTCGCCTTCGTTTACATCATGAGAAAGGCTGTCGATTTGAGCG
ATTGGGACATTATTCTGCCTCTCGTGGTCGCTTGTACTGCTTGCGCGATA
TGGACCGGAGCGTCTCACTCCCTTTGCACGCTGAGAGTACAAGGAGCCGT
GGACAAAATTCGGTCGACAAACGATGAGGAGAGCGATCGTCGCCTGGGGC
GTGGTAGGCCGGCGGAGCCTCTCGACGTTGACGACGGTGTACATGTAGAT
GTTTTCGAATACCACGACATCACAACGATGTCTTTGCACTTTTTGAGGGC
GGGGCTGGTTTGGGCGCTGGTCCAACTGTTCGTGATAGCACTGTGTGTGG
TACTTATACCTTGGTACTTGTTTTTGGGCCAGTCAACATGCCAGAGTTGG
TCCTGGTTTAGTTGCCAGTCTTATTCGTCGTCCTTCTTCCCGCTGTTGAG
TGTCGTCGCCGTTTTGTGGACAGGATACCTTATGCACTACCTCCGCCGGC
TTGGTGTGATTGAAGACATCCGGACGTTTGGGGAGCCGTGCCGTACAAAG
ACCTTTTACCTCCATGCATGGAAATATCTGTTAGCAGGAAGCTTGCTCTA
CGCCACACTCTTGTACGTCTCCCCGGCCCCTACCGCGTGGCGCTGGGCCT
TGATCGTGACCCACAGTTTGAGGGCAGTGAAGGTTTTGGTTTCCCTCCGT
GGTCAGAGTTGCAACGCAGTAGAGGAAGGGGGAGGGGTGGCGGACGATGT
GCTGTAGGTTCGGCGTGTTTTCTCCTAGACTACTTGGATACTAGAGAGGT
GATACATGCAGCACAGGATAAGTTAAGCGCGTGTTTTTGTCTGTGCAGAT
GATAGTGGTAACCTCGCGGAGATGGCTAGCTGCACACTCAAGGGGGAAGT
AAAGAGAACGTGGAAAGACACGTCTATGTGTGCGGCACTATGAGACCGTA
AGTTTGTCATGTGGAGTTCGATGATTTCAAAGACTACCGGAATTGAAGCT
AAGTCGATGGGGGCTTAATCCGTGATGATGCTCCGGGGCTGCTCTTTCCA
GCGATACAAAACTATGTAAATGAGCGAGCGTAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig101:27988..29670+ >mRNA_E-fasciculatus_F_contig101.111.1 ID=mRNA_E-fasciculatus_F_contig101.111.1|Name=mRNA_E-fasciculatus_F_contig101.111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig101:27988..29670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAGAAAGGCTGTCGATTTGAGCGATTGGGACATTATTCTGCCTCTCGT GGTCGCTTGTACTGCTTGCGCGATATGGACCGGAGCGTCTCACTCCCTTT GCACGCTGAGAGTACAAGGAGCCGTGGACAAAATTCGGTCGACAAACGAT GAGGAGAGCGATCGTCGCCTGGGGCGTGGTAGGCCGGCGGAGCCTCTCGA CGTTGACGACGGTGTACATGTAGATGTTTTCGAATACCACGACATCACAA CGATGTCTTTGCACTTTTTGAGGGCGGGGCTGGTTTGGGCGCTGGTCCAA CTGTTCGTGATAGCACTGTGTGTGGTACTTATACCTTGGTACTTGTTTTT GGGCCAGTCAACATGCCAGAGTTGGTCCTGGTTTAGTTGCCAGTCTTATT CGTCGTCCTTCTTCCCGCTGTTGAGTGTCGTCGCCGTTTTGTGGACAGGA TACCTTATGCACTACCTCCGCCGGCTTGGTGTGATTGAAGACATCCGGAC GTTTGGGGAGCCGTGCCGTACAAAGACCTTTTACCTCCATGCATGGAAAT ATCTGTTAGCAGGAAGCTTGCTCTACGCCACACTCTTGTACGTCTCCCCG GCCCCTACCGCGTGGCGCTGGGCCTTGATCGTGACCCACAGTTTGAGGGC AGTGAAGGTTTTGGTTTCCCTCCGTGGTCAGAGTTGCAACGCAGTAGAGG AAGGGGGAGGGGTGGCGGACGATGTGCTGTAGATGAGAAAGGCTGTCGAT TTGAGCGATTGGGACATTATTCTGCCTCTCGTGGTCGCTTGTACTGCTTG CGCGATATGGACCGGAGCGTCTCACTCCCTTTGCACGCTGAGAGTACAAG GAGCCGTGGACAAAATTCGGTCGACAAACGATGAGGAGAGCGATCGTCGC CTGGGGCGTGGTAGGCCGGCGGAGCCTCTCGACGTTGACGACGGTGTACA TGTAGATGTTTTCGAATACCACGACATCACAACGATGTCTTTGCACTTTT TGAGGGCGGGGCTGGTTTGGGCGCTGGTCCAACTGTTCGTGATAGCACTG TGTGTGGTACTTATACCTTGGTACTTGTTTTTGGGCCAGTCAACATGCCA GAGTTGGTCCTGGTTTAGTTGCCAGTCTTATTCGTCGTCCTTCTTCCCGC TGTTGAGTGTCGTCGCCGTTTTGTGGACAGGATACCTTATGCACTACCTC CGCCGGCTTGGTGTGATTGAAGACATCCGGACGTTTGGGGAGCCGTGCCG TACAAAGACCTTTTACCTCCATGCATGGAAATATCTGTTAGCAGGAAGCT TGCTCTACGCCACACTCTTGTACGTCTCCCCGGCCCCTACCGCGTGGCGC TGGGCCTTGATCGTGACCCACAGTTTGAGGGCAGTGAAGGTTTTGGTTTC CCTCCGTGGTCAGAGTTGCAACGCAGTAGAGGAAGGGGGAGGGGTGGCGG ACGATGTGCTGTAG back to top
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