mRNA_E-fasciculatus_F_contig101.111.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig101.111.1
Unique NamemRNA_E-fasciculatus_F_contig101.111.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig101.111.1 vs. uniprot
Match: D7FLK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.140e-8
Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = 2 
Query: 1019 SYSSSFFPLLSVVAVL------WTGYLMHYLRRLGVIEDI--RTFGEP--CRTKTFYLHAWKYLLAGSLLYATLLYVSPAPTAWRWALIVTHSLRAVKVLVSLRGQSCNAVEEGGGVADDV 1351
            S+ S  F +  V  V+      WT  L H L R  +   I  R F     C T+    H   +LLAG ++YA LL++SPAP+ W W+LIVTHS R + +L++LRG +       G +   V
Sbjct:  241 SHLSLVFSVFQVAVVIVIYFSCWTICLTHLLYRPFIKTAIYGRFFQWELICMTQPRCRHVRAFLLAGGMIYAVLLHLSPAPSKWTWSLIVTHSTRLLSLLIALRGDNEGVANAAGEIVAHV 361
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig101.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLK8_ECTSI2.140e-836.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig101contigE-fasciculatus_F_contig101:27988..29670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1683
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig101.111.1prot_E-fasciculatus_F_contig101.111.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig101 28613..29344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.8557756-UTR-E-fasciculatus_F_contig101:27987..286121622927511.8557756-UTR-E-fasciculatus_F_contig101:27987..28612Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig101 27988..28612 +
1695995571.9955864-UTR-E-fasciculatus_F_contig101:27987..286121695995571.9955864-UTR-E-fasciculatus_F_contig101:27987..28612Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig101 27988..28612 +
1622927511.8756063-UTR-E-fasciculatus_F_contig101:29344..296701622927511.8756063-UTR-E-fasciculatus_F_contig101:29344..29670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig101 29345..29670 +
1695995572.0114903-UTR-E-fasciculatus_F_contig101:29344..296701695995572.0114903-UTR-E-fasciculatus_F_contig101:29344..29670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig101 29345..29670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.866313-CDS-E-fasciculatus_F_contig101:28612..293441622927511.866313-CDS-E-fasciculatus_F_contig101:28612..29344Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig101 28613..29344 +
1695995572.003543-CDS-E-fasciculatus_F_contig101:28612..293441695995572.003543-CDS-E-fasciculatus_F_contig101:28612..29344Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig101 28613..29344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig101.111.1

>prot_E-fasciculatus_F_contig101.111.1 ID=prot_E-fasciculatus_F_contig101.111.1|Name=mRNA_E-fasciculatus_F_contig101.111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=244bp
MRKAVDLSDWDIILPLVVACTACAIWTGASHSLCTLRVQGAVDKIRSTND
EESDRRLGRGRPAEPLDVDDGVHVDVFEYHDITTMSLHFLRAGLVWALVQ
LFVIALCVVLIPWYLFLGQSTCQSWSWFSCQSYSSSFFPLLSVVAVLWTG
YLMHYLRRLGVIEDIRTFGEPCRTKTFYLHAWKYLLAGSLLYATLLYVSP
APTAWRWALIVTHSLRAVKVLVSLRGQSCNAVEEGGGVADDVL*
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mRNA from alignment at E-fasciculatus_F_contig101:27988..29670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig101.111.1 ID=mRNA_E-fasciculatus_F_contig101.111.1|Name=mRNA_E-fasciculatus_F_contig101.111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1683bp|location=Sequence derived from alignment at E-fasciculatus_F_contig101:27988..29670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCTTCTGCAGCCATACGCACTTTGGAGGTGGATCGTATCGACGTCTT
GAGGACGAAGAACTTTCTCTCAGACCTCGGTCCTCAGGTTAGTGGCGTCT
GTCTTCTACGTACGAGCGCATTTCCGCTGATCGGTTTGATGCAGACGAGC
GGAAGCCTCTCTGCTACCCAATAACGAATGAAGATTAAAGAACGGCTACA
CAAGTTTGGGGGTCAATCGATGGCCACAACCACGGTCCTAGCCACACTGT
CCGTCGGGAAGGAAGTGTTGCGAGAAAACACACTGGGGAATGAACCCAAA
CGACAATGTTAGGTTCTTCACAGCTGGGGGTGCTGGGGTTGGTGAGTGCT
GTGGCATTCATCACTAGCGCGAGGTAGGATATCGCGTGGCTCACCGGGGC
AGCAATGCTTCAGAGACCATACCCCAAAGCACGACCGTGGCTGAGGCGGG
AGAATGCATCGTTTGACGACGGCACTCACCTGGACGTAGCAAGAGCACAA
TGGTTGTTCACCACTGAATAAGCGATGTTTGTACTTGCTCCTTGTCTTTT
GCAGGCCGAAGCGCTGGAAGCACGTGTTTGTGCGTTGTGGAGGCCGTTCT
GTCAACTGTCGCCTTCGTTTACATCATGAGAAAGGCTGTCGATTTGAGCG
ATTGGGACATTATTCTGCCTCTCGTGGTCGCTTGTACTGCTTGCGCGATA
TGGACCGGAGCGTCTCACTCCCTTTGCACGCTGAGAGTACAAGGAGCCGT
GGACAAAATTCGGTCGACAAACGATGAGGAGAGCGATCGTCGCCTGGGGC
GTGGTAGGCCGGCGGAGCCTCTCGACGTTGACGACGGTGTACATGTAGAT
GTTTTCGAATACCACGACATCACAACGATGTCTTTGCACTTTTTGAGGGC
GGGGCTGGTTTGGGCGCTGGTCCAACTGTTCGTGATAGCACTGTGTGTGG
TACTTATACCTTGGTACTTGTTTTTGGGCCAGTCAACATGCCAGAGTTGG
TCCTGGTTTAGTTGCCAGTCTTATTCGTCGTCCTTCTTCCCGCTGTTGAG
TGTCGTCGCCGTTTTGTGGACAGGATACCTTATGCACTACCTCCGCCGGC
TTGGTGTGATTGAAGACATCCGGACGTTTGGGGAGCCGTGCCGTACAAAG
ACCTTTTACCTCCATGCATGGAAATATCTGTTAGCAGGAAGCTTGCTCTA
CGCCACACTCTTGTACGTCTCCCCGGCCCCTACCGCGTGGCGCTGGGCCT
TGATCGTGACCCACAGTTTGAGGGCAGTGAAGGTTTTGGTTTCCCTCCGT
GGTCAGAGTTGCAACGCAGTAGAGGAAGGGGGAGGGGTGGCGGACGATGT
GCTGTAGGTTCGGCGTGTTTTCTCCTAGACTACTTGGATACTAGAGAGGT
GATACATGCAGCACAGGATAAGTTAAGCGCGTGTTTTTGTCTGTGCAGAT
GATAGTGGTAACCTCGCGGAGATGGCTAGCTGCACACTCAAGGGGGAAGT
AAAGAGAACGTGGAAAGACACGTCTATGTGTGCGGCACTATGAGACCGTA
AGTTTGTCATGTGGAGTTCGATGATTTCAAAGACTACCGGAATTGAAGCT
AAGTCGATGGGGGCTTAATCCGTGATGATGCTCCGGGGCTGCTCTTTCCA
GCGATACAAAACTATGTAAATGAGCGAGCGTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig101:27988..29670+

>mRNA_E-fasciculatus_F_contig101.111.1 ID=mRNA_E-fasciculatus_F_contig101.111.1|Name=mRNA_E-fasciculatus_F_contig101.111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig101:27988..29670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGAAAGGCTGTCGATTTGAGCGATTGGGACATTATTCTGCCTCTCGT
GGTCGCTTGTACTGCTTGCGCGATATGGACCGGAGCGTCTCACTCCCTTT
GCACGCTGAGAGTACAAGGAGCCGTGGACAAAATTCGGTCGACAAACGAT
GAGGAGAGCGATCGTCGCCTGGGGCGTGGTAGGCCGGCGGAGCCTCTCGA
CGTTGACGACGGTGTACATGTAGATGTTTTCGAATACCACGACATCACAA
CGATGTCTTTGCACTTTTTGAGGGCGGGGCTGGTTTGGGCGCTGGTCCAA
CTGTTCGTGATAGCACTGTGTGTGGTACTTATACCTTGGTACTTGTTTTT
GGGCCAGTCAACATGCCAGAGTTGGTCCTGGTTTAGTTGCCAGTCTTATT
CGTCGTCCTTCTTCCCGCTGTTGAGTGTCGTCGCCGTTTTGTGGACAGGA
TACCTTATGCACTACCTCCGCCGGCTTGGTGTGATTGAAGACATCCGGAC
GTTTGGGGAGCCGTGCCGTACAAAGACCTTTTACCTCCATGCATGGAAAT
ATCTGTTAGCAGGAAGCTTGCTCTACGCCACACTCTTGTACGTCTCCCCG
GCCCCTACCGCGTGGCGCTGGGCCTTGATCGTGACCCACAGTTTGAGGGC
AGTGAAGGTTTTGGTTTCCCTCCGTGGTCAGAGTTGCAACGCAGTAGAGG
AAGGGGGAGGGGTGGCGGACGATGTGCTGTAGATGAGAAAGGCTGTCGAT
TTGAGCGATTGGGACATTATTCTGCCTCTCGTGGTCGCTTGTACTGCTTG
CGCGATATGGACCGGAGCGTCTCACTCCCTTTGCACGCTGAGAGTACAAG
GAGCCGTGGACAAAATTCGGTCGACAAACGATGAGGAGAGCGATCGTCGC
CTGGGGCGTGGTAGGCCGGCGGAGCCTCTCGACGTTGACGACGGTGTACA
TGTAGATGTTTTCGAATACCACGACATCACAACGATGTCTTTGCACTTTT
TGAGGGCGGGGCTGGTTTGGGCGCTGGTCCAACTGTTCGTGATAGCACTG
TGTGTGGTACTTATACCTTGGTACTTGTTTTTGGGCCAGTCAACATGCCA
GAGTTGGTCCTGGTTTAGTTGCCAGTCTTATTCGTCGTCCTTCTTCCCGC
TGTTGAGTGTCGTCGCCGTTTTGTGGACAGGATACCTTATGCACTACCTC
CGCCGGCTTGGTGTGATTGAAGACATCCGGACGTTTGGGGAGCCGTGCCG
TACAAAGACCTTTTACCTCCATGCATGGAAATATCTGTTAGCAGGAAGCT
TGCTCTACGCCACACTCTTGTACGTCTCCCCGGCCCCTACCGCGTGGCGC
TGGGCCTTGATCGTGACCCACAGTTTGAGGGCAGTGAAGGTTTTGGTTTC
CCTCCGTGGTCAGAGTTGCAACGCAGTAGAGGAAGGGGGAGGGGTGGCGG
ACGATGTGCTGTAG
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