mRNA_E-fasciculatus_F_contig10098.106.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10098.106.1
Unique NamemRNA_E-fasciculatus_F_contig10098.106.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10098.106.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.020e-14
Identity = 43/48 (89.58%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 MLLVRGLSLLAVGLAAAPTGCALVSPTPLPRTTAGGHSAAAAAARSKH 144
            MLLVRGLSLLAVGLAAAPTGCALV PTPLPRTTAGGH  AAA AR KH
Sbjct:    1 MLLVRGLSLLAVGLAAAPTGCALVPPTPLPRTTAGGH--AAATARGKH 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10098.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI5_ECTSI3.020e-1489.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10098contigE-fasciculatus_F_contig10098:2361..2504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D8LNI5
KEGG koko:K09660
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Hectar predicted targeting categorysignal peptide
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.3228707-CDS-E-fasciculatus_F_contig10098:2360..25041622927511.3228707-CDS-E-fasciculatus_F_contig10098:2360..2504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 2361..2504 +
1695995571.6443152-CDS-E-fasciculatus_F_contig10098:2360..25041695995571.6443152-CDS-E-fasciculatus_F_contig10098:2360..2504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 2361..2504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10098.106.1prot_E-fasciculatus_F_contig10098.106.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10098 2361..2504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10098.106.1

>prot_E-fasciculatus_F_contig10098.106.1 ID=prot_E-fasciculatus_F_contig10098.106.1|Name=mRNA_E-fasciculatus_F_contig10098.106.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
MLLVRGLSLLAVGLAAAPTGCALVSPTPLPRTTAGGHSAAAAAARSKH
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mRNA from alignment at E-fasciculatus_F_contig10098:2361..2504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10098.106.1 ID=mRNA_E-fasciculatus_F_contig10098.106.1|Name=mRNA_E-fasciculatus_F_contig10098.106.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:2361..2504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTCGTTCGAGGTCTGTCGTTGCTGGCTGTCGGCCTCGCGGCGGC
ACCGACCGGCTGTGCGCTTGTCTCGCCCACGCCGCTGCCTCGGACCACGG
CGGGAGGGCACTCTGCTGCTGCGGCTGCTGCAAGAAGCAAACAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:2361..2504+

>mRNA_E-fasciculatus_F_contig10098.106.1 ID=mRNA_E-fasciculatus_F_contig10098.106.1|Name=mRNA_E-fasciculatus_F_contig10098.106.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:2361..2504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTCGTTCGAGGTCTGTCGTTGCTGGCTGTCGGCCTCGCGGCGGC
ACCGACCGGCTGTGCGCTTGTCTCGCCCACGCCGCTGCCTCGGACCACGG
CGGGAGGGCACTCTGCTGCTGCGGCTGCTGCAAGAAGCAAACATATGCTG
CTCGTTCGAGGTCTGTCGTTGCTGGCTGTCGGCCTCGCGGCGGCACCGAC
CGGCTGTGCGCTTGTCTCGCCCACGCCGCTGCCTCGGACCACGGCGGGAG
GGCACTCTGCTGCTGCGGCTGCTGCAAGAAGCAAACAT
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