mRNA_E-fasciculatus_F_contig10097.104.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10097.104.1
Unique NamemRNA_E-fasciculatus_F_contig10097.104.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10097.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10097contigE-fasciculatus_F_contig10097:2592..4282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002140.1
Exons2
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.197148-CDS-E-fasciculatus_F_contig10097:2591..27441622927511.197148-CDS-E-fasciculatus_F_contig10097:2591..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10097 2592..2744 +
1695995571.5834043-CDS-E-fasciculatus_F_contig10097:2591..27441695995571.5834043-CDS-E-fasciculatus_F_contig10097:2591..2744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10097 2592..2744 +
1622927511.2062676-CDS-E-fasciculatus_F_contig10097:4198..42821622927511.2062676-CDS-E-fasciculatus_F_contig10097:4198..4282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10097 4199..4282 +
1695995571.6050503-CDS-E-fasciculatus_F_contig10097:4198..42821695995571.6050503-CDS-E-fasciculatus_F_contig10097:4198..4282Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10097 4199..4282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10097.104.1prot_E-fasciculatus_F_contig10097.104.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10097 2592..4282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10097.104.1

>prot_E-fasciculatus_F_contig10097.104.1 ID=prot_E-fasciculatus_F_contig10097.104.1|Name=mRNA_E-fasciculatus_F_contig10097.104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=79bp
MAPHTTDNAQKKKHKSDEKLKHQQEQPAAAVVLNLRAGEEITGLTRDEMA
SVGSVPIKPNPTTYGNSRWVRGARRRMSG
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mRNA from alignment at E-fasciculatus_F_contig10097:2592..4282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10097.104.1 ID=mRNA_E-fasciculatus_F_contig10097.104.1|Name=mRNA_E-fasciculatus_F_contig10097.104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1691bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10097:2592..4282+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCCCCACACCACGGACAACGCCCAGAAGAAGAAGCACAAGAGCGA
CGAAAAGTTGAAGCATCAGCAGGAGCAGCCGGCGGCGGCCGTGGTTCTCA
ACCTCCGGGCAGGCGAGGAGATCACGGGGCTCACCAGGGACGAGATGGCC
TCCGTGTGCGACAAGCTCGAGCAGTTCGCGAAGAAGAACCCGCACCGCGT
GGAGGAGCACGCCTCGGGGGGTGGCGGCGGCGGCGGTGGCGGCCAGGAGA
GGCGGAAGCAGAAGAGCTGTGCGTGAATCCCCGCAACATAATCTGCACAC
ACAAGGTGAGAGCAACATACAAACATCATCAGTCGTCTACCTTCTGTTTG
GTTGTGGGCAAAGGTCGGGTTTGCACATATCCCCGCAGCGCATGGAAGTT
ACCCTGCCATGGTGCTCCCAGCGAACCCAGGAGCATCTCCAACAGCAGCA
GTAGCACAGAGTAGCGATCTTTTTTGGCCAAGTTCCGACTTGGATATGCA
GGTCCGCGAAGAACTCTGTTTTTTCGGGAGTTTCTCCGCTCCTGTTTGAC
TAGTCTTGTACAGCGTTCGCATACACACAAAGGGTCGGAATACTACATAG
TACATGCAGTAGTGCTGCTCTAATTTGGATATGAGGGCAAGGCCATTACA
ACATTGTAAGAATGATGCGCAGTCATCTTGCTCTCTCTCTCTCTCTCAAA
TCTTGACGTAACCCGGAGGCCTCGAACAAATCTCAGCCCTGTCATGTAGG
TGTGTTTTATGTGTGTGACCATCACAGAGGACCATGGCACATTATTGTCA
ACCTTTTGTATTTGTGTTGCAACAGGGACGGAACCCCGTATGTCTCCAAC
ACTATGTACTACCCCCCGTGTATGCTACAAATGGCATCTGTGCGAACCAA
AGAACGTGCCGACGGCGAGTGTTTGTGAAATGTGAAAAGCCGTTTTGTTT
CTGCGCAAAAGCAGAACGGCGCCCTTGGCCACATGCACCATGTGTCACGT
GTCCACGTGCCTGTTTGGACCATGCGGATATTCTGCATCTGTTTAGAACA
ACTACCCGTGTACCAAGATGCTCCCCTCTAGGTGCCTTTTTAACGTGAGA
TAACAACAACAACATTATCCCCCTCCATTCCTCGAACAGTCGCATGGAAG
TTTCTGTTCAGGGAAGATTAAGAACGATGAATTTTGCGCTTGCTATTACG
AACACTTCCAAGCAGCTCAAGCAGCTGGCATGCAACGCTGCCGCCCGGGC
AAGGTCAACCACTACAGCTACATATGCACAGTAGCACAGACACCCTTCCG
ACATCTAAAAAGCTCTTTTTCCGACAGCATTTCCACGCGTCTCCGACGGT
TCTGTTCTTACAACAGTTGGAGTTTATTCGTTTGAATTCTCTTTCGAATC
GAAGCTTTTTCAAAAATCGGCGGCGACGTTGCGTCGGCGCAAGTGTGTAA
ACAACAACCAGTTTCTACGAAAATTGGTGCAAGACAAAAAATGAAGGGAA
AGATTAAGACCGACGAGTGCCGCTAAAACCAGTGCCCACACACAGCAGTG
TTGTACGTTGTGGCGCTCGTTTATGTCCGTTTCTCCGCCGCTCTCCGTCC
CACTCAGGTCGGTTCTGTGCCCATCAAGCCGAACCCTACTACCTACGGCA
ACAGCAGGTGGGTGAGAGGAGCGAGGCGACGCATGTCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10097:2592..4282+

>mRNA_E-fasciculatus_F_contig10097.104.1 ID=mRNA_E-fasciculatus_F_contig10097.104.1|Name=mRNA_E-fasciculatus_F_contig10097.104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10097:2592..4282+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCCCCACACCACGGACAACGCCCAGAAGAAGAAGCACAAGAGCGA
CGAAAAGTTGAAGCATCAGCAGGAGCAGCCGGCGGCGGCCGTGGTTCTCA
ACCTCCGGGCAGGCGAGGAGATCACGGGGCTCACCAGGGACGAGATGGCC
TCCATGGCCCCCCACACCACGGACAACGCCCAGAAGAAGAAGCACAAGAG
CGACGAAAAGTTGAAGCATCAGCAGGAGCAGCCGGCGGCGGCCGTGGTTC
TCAACCTCCGGGCAGGCGAGGAGATCACGGGGCTCACCAGGGACGAGATG
GCCTCCGTCGGTTCTGTGCCCATCAAGCCGAACCCTACTACCTACGGCAA
CAGCAGGTGGGTGAGAGGAGCGAGGCGACGCATGTCGGGGGTCGGTTCTG
TGCCCATCAAGCCGAACCCTACTACCTACGGCAACAGCAGGTGGGTGAGA
GGAGCGAGGCGACGCATGTCGGGG
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