Homology
BLAST of mRNA_E-fasciculatus_F_contig10090.96.1 vs. uniprot
Match: D7G135_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G135_ECTSI) HSP 1 Score: 100 bits (250), Expect = 8.860e-21 Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 3 Query: 174 GRPTRRKKGKTAT--NNGNHPS-REAPAPSKKSRGAAAGKRTAAAGANMGEKTGSRKRTPLPRAKESAEKTEARETATAKLQAKKEQKWESFKTARGLEQEDQVERADRRKENDRALLVMTSIKLPARPKLESPGMRKRATERTTAPLSVGRDS 626
G P ++ +GK+ N+ +H S R+A A + K G AAG AA GAN K +KRT LPRAKES + EARE AT +L+ +K +KW +F ARG+ ++ Q ERAD+RK+NDR+L S + +RPKLESPGMR+RA RT L+V R++
Sbjct: 63 GAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAAGNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARKWGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQRAGPRTATSLTVRRNT 216
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 2 |
| Model size | 963 |
| Cds size | 522 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10090.96.1 >prot_E-fasciculatus_F_contig10090.96.1 ID=prot_E-fasciculatus_F_contig10090.96.1|Name=mRNA_E-fasciculatus_F_contig10090.96.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
VRRLVWRLLHVRSEAARVRATTHSSFAVAGVGGRGRAVRRSQEKGGKAAP
EEQDRGGEDGRPGEKKGRRQPTTAITLRGRRPPRPKKAGGRRLGSVRPPL
VRIWVRKPGAGSAPLCRERKSQQKKQRRGRRRRRSSKPKRSRNGSLLRQR
GDSSRKTRSSGRTGGKRTTAPCW* back to topmRNA from alignment at E-fasciculatus_F_contig10090:1344..2559- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10090.96.1 ID=mRNA_E-fasciculatus_F_contig10090.96.1|Name=mRNA_E-fasciculatus_F_contig10090.96.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10090:1344..2559- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAGACGACTCGTCTGGAGACTACTTCATGTTCGATCTGAAGCGGCAAG
GGTCCGTGCGACGACGCACAGTTCGTTCGCTGTCGCCGGAGTCGGTGGAA
GAGGTCGAGCCGTCCGCCGCAGCCAAGAAAAAGGGGGGAAAGCCGCGCCA
GAAGAACAAGACCGCGGCGGGGAGGACGGCCGACCCGGCGAAAAAAAGGG
AAGACGGCAACCAACAACGGCAATCACCCTTCGCGGGAGGCGCCCGCCCC
GTCCAAAAAAAGCCGGGGGGCGGCGGCTGGGAAGCGTACGGCCGCCGCTG
GTGCGAATATGGGTGAGAAAACCGGGAGCAGGAAGCGCACCCCTTTGCCG
AGAGCGAAAGAGTCAGCAGAAAAAACAGAGGCGAGGGAGACGGCGACGGC
GAAGCTCCAAGCCAAAAAGGAGCAGAAATGGGAGTCTTTTAAGACAGCGC
GGGGACTCGAGCAGGAAGACCAGGTCGAGCGGGCGGACAGGAGGAAAGAG
AACGACCGCGCCCTGCTGGTGATGACAAGTATAAAGCTACCAGCGTCTAC
CATCTCCCCCGCCTATTGCGCTGCCCATCTCGTACTAGAATACTATTTCG
TGCCTCCCGCTTCTGCCTAAGACCACGAAGGTGTCTGTCAAGACAATGCG
CACTTGCCGTCTCGCTATATGTAACACTATCGTTGTGAACGAAAGGAATG
GCGACATCCGTTTGTGTAGGATCCGCTGAGTTTCGTGTCACCCTCGTACC
TGCGAACATGTTGCACCAGGTCACCCGGAAGGAACGGCCGTCCTCCGAGA
CGTCCAAAGCTCGAGAGCCCGGGAATGCGAAAGCGGGCTACGGAGCGGAC
GACCGCCCCTTTGAGCGTGGGGAGGGACAGCCGCAGCCCATGGACGGCAC
CAGAAGGCATGTACGACACCAGCTCTCGCCCTCCGTACGGGTGGTACGGA
GGATCGCCCAAACCGCAGGCGGGGGTCTCGTAGCCTTGACCAGGGACGTC
GCCGGGGACCAAGCTCTGCCAGAGGCCGTAACGACAGCCGCTCGAGGCCC
GGAGGCGGTTGCGCCGGGGGCGGGGTCATGCCCAACCAACGATCGCGCTC
TCGAGGAAGGCAGAGGAACTACCCCGGTGGTGGCGATACCCACGGCGACA
GGCGAGATTCAAGGAGCCGCGGACGATCTCGGTACTCGCGGTCACCTTCA
CGACCGTATTCCAGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10090:1344..2559- >mRNA_E-fasciculatus_F_contig10090.96.1 ID=mRNA_E-fasciculatus_F_contig10090.96.1|Name=mRNA_E-fasciculatus_F_contig10090.96.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10090:1344..2559- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAGACGACTCGTCTGGAGACTACTTCATGTTCGATCTGAAGCGGCAAG
GGTCCGTGCGACGACGCACAGTTCGTTCGCTGTCGCCGGAGTCGGTGGAA
GAGGTCGAGCCGTCCGCCGCAGCCAAGAAAAAGGGGGGAAAGCCGCGCCA
GAAGAACAAGACCGCGGCGGGGAGGACGGCCGACCCGGCGAAAAAAAGGG
AAGACGGCAACCAACAACGGCAATCACCCTTCGCGGGAGGCGCCCGCCCC
GTCCAAAAAAAGCCGGGGGGCGGCGGCTGGGAAGCGTACGGCCGCCGCTG
GTGCGAATATGGGTGAGAAAACCGGGAGCAGGAAGCGCACCCCTTTGCCG
AGAGCGAAAGAGTCAGCAGAAAAAACAGAGGCGAGGGAGACGGCGACGGC
GAAGCTCCAAGCCAAAAAGGAGCAGAAATGGGAGTCTTTTAAGACAGCGC
GGGGACTCGAGCAGGAAGACCAGGTCGAGCGGGCGGACAGGAGGAAAGAG
AACGACCGCGCCCTGCTGGTGAGTTAGACGACTCGTCTGGAGACTACTTC
ATGTTCGATCTGAAGCGGCAAGGGTCCGTGCGACGACGCACAGTTCGTTC
GCTGTCGCCGGAGTCGGTGGAAGAGGTCGAGCCGTCCGCCGCAGCCAAGA
AAAAGGGGGGAAAGCCGCGCCAGAAGAACAAGACCGCGGCGGGGAGGACG
GCCGACCCGGCGAAAAAAAGGGAAGACGGCAACCAACAACGGCAATCACC
CTTCGCGGGAGGCGCCCGCCCCGTCCAAAAAAAGCCGGGGGGCGGCGGCT
GGGAAGCGTACGGCCGCCGCTGGTGCGAATATGGGTGAGAAAACCGGGAG
CAGGAAGCGCACCCCTTTGCCGAGAGCGAAAGAGTCAGCAGAAAAAACAG
AGGCGAGGGAGACGGCGACGGCGAAGCTCCAAGCCAAAAAGGAGCAGAAA
TGGGAGTCTTTTAAGACAGCGCGGGGACTCGAGCAGGAAGACCAGGTCGA
GCGGGCGGACAGGAGGAAAGAGAACGACCGCGCCCTGCTGGTGA back to top
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