mRNA_E-fasciculatus_F_contig10090.96.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10090.96.1
Unique NamemRNA_E-fasciculatus_F_contig10090.96.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10090.96.1 vs. uniprot
Match: D7G135_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G135_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.860e-21
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 3 
Query:  174 GRPTRRKKGKTAT--NNGNHPS-REAPAPSKKSRGAAAGKRTAAAGANMGEKTGSRKRTPLPRAKESAEKTEARETATAKLQAKKEQKWESFKTARGLEQEDQVERADRRKENDRALLVMTSIKLPARPKLESPGMRKRATERTTAPLSVGRDS 626
            G P ++ +GK+    N+ +H S R+A A + K  G AAG   AA GAN   K   +KRT LPRAKES  + EARE AT +L+ +K +KW +F  ARG+ ++ Q ERAD+RK+NDR+L    S +  +RPKLESPGMR+RA  RT   L+V R++
Sbjct:   63 GAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAAGNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARKWGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQRAGPRTATSLTVRRNT 216
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10090.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G135_ECTSI8.860e-2148.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10090contigE-fasciculatus_F_contig10090:1344..2559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size963
Cds size522
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10090.96.1prot_E-fasciculatus_F_contig10090.96.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10090 2038..2559 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.7879336-UTR-E-fasciculatus_F_contig10090:1343..17601622927510.7879336-UTR-E-fasciculatus_F_contig10090:1343..1760Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10090 1344..1760 -
1695995571.338628-UTR-E-fasciculatus_F_contig10090:1343..17601695995571.338628-UTR-E-fasciculatus_F_contig10090:1343..1760Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10090 1344..1760 -
1622927510.8040197-UTR-E-fasciculatus_F_contig10090:2015..20371622927510.8040197-UTR-E-fasciculatus_F_contig10090:2015..2037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10090 2016..2037 -
1695995571.3512034-UTR-E-fasciculatus_F_contig10090:2015..20371695995571.3512034-UTR-E-fasciculatus_F_contig10090:2015..2037Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10090 2016..2037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.8146756-CDS-E-fasciculatus_F_contig10090:2037..25591622927510.8146756-CDS-E-fasciculatus_F_contig10090:2037..2559Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10090 2038..2559 -
1695995571.36103-CDS-E-fasciculatus_F_contig10090:2037..25591695995571.36103-CDS-E-fasciculatus_F_contig10090:2037..2559Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10090 2038..2559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10090.96.1

>prot_E-fasciculatus_F_contig10090.96.1 ID=prot_E-fasciculatus_F_contig10090.96.1|Name=mRNA_E-fasciculatus_F_contig10090.96.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
VRRLVWRLLHVRSEAARVRATTHSSFAVAGVGGRGRAVRRSQEKGGKAAP
EEQDRGGEDGRPGEKKGRRQPTTAITLRGRRPPRPKKAGGRRLGSVRPPL
VRIWVRKPGAGSAPLCRERKSQQKKQRRGRRRRRSSKPKRSRNGSLLRQR
GDSSRKTRSSGRTGGKRTTAPCW*
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mRNA from alignment at E-fasciculatus_F_contig10090:1344..2559-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10090.96.1 ID=mRNA_E-fasciculatus_F_contig10090.96.1|Name=mRNA_E-fasciculatus_F_contig10090.96.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10090:1344..2559- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAGACGACTCGTCTGGAGACTACTTCATGTTCGATCTGAAGCGGCAAG
GGTCCGTGCGACGACGCACAGTTCGTTCGCTGTCGCCGGAGTCGGTGGAA
GAGGTCGAGCCGTCCGCCGCAGCCAAGAAAAAGGGGGGAAAGCCGCGCCA
GAAGAACAAGACCGCGGCGGGGAGGACGGCCGACCCGGCGAAAAAAAGGG
AAGACGGCAACCAACAACGGCAATCACCCTTCGCGGGAGGCGCCCGCCCC
GTCCAAAAAAAGCCGGGGGGCGGCGGCTGGGAAGCGTACGGCCGCCGCTG
GTGCGAATATGGGTGAGAAAACCGGGAGCAGGAAGCGCACCCCTTTGCCG
AGAGCGAAAGAGTCAGCAGAAAAAACAGAGGCGAGGGAGACGGCGACGGC
GAAGCTCCAAGCCAAAAAGGAGCAGAAATGGGAGTCTTTTAAGACAGCGC
GGGGACTCGAGCAGGAAGACCAGGTCGAGCGGGCGGACAGGAGGAAAGAG
AACGACCGCGCCCTGCTGGTGATGACAAGTATAAAGCTACCAGCGTCTAC
CATCTCCCCCGCCTATTGCGCTGCCCATCTCGTACTAGAATACTATTTCG
TGCCTCCCGCTTCTGCCTAAGACCACGAAGGTGTCTGTCAAGACAATGCG
CACTTGCCGTCTCGCTATATGTAACACTATCGTTGTGAACGAAAGGAATG
GCGACATCCGTTTGTGTAGGATCCGCTGAGTTTCGTGTCACCCTCGTACC
TGCGAACATGTTGCACCAGGTCACCCGGAAGGAACGGCCGTCCTCCGAGA
CGTCCAAAGCTCGAGAGCCCGGGAATGCGAAAGCGGGCTACGGAGCGGAC
GACCGCCCCTTTGAGCGTGGGGAGGGACAGCCGCAGCCCATGGACGGCAC
CAGAAGGCATGTACGACACCAGCTCTCGCCCTCCGTACGGGTGGTACGGA
GGATCGCCCAAACCGCAGGCGGGGGTCTCGTAGCCTTGACCAGGGACGTC
GCCGGGGACCAAGCTCTGCCAGAGGCCGTAACGACAGCCGCTCGAGGCCC
GGAGGCGGTTGCGCCGGGGGCGGGGTCATGCCCAACCAACGATCGCGCTC
TCGAGGAAGGCAGAGGAACTACCCCGGTGGTGGCGATACCCACGGCGACA
GGCGAGATTCAAGGAGCCGCGGACGATCTCGGTACTCGCGGTCACCTTCA
CGACCGTATTCCAGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10090:1344..2559-

>mRNA_E-fasciculatus_F_contig10090.96.1 ID=mRNA_E-fasciculatus_F_contig10090.96.1|Name=mRNA_E-fasciculatus_F_contig10090.96.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10090:1344..2559- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTAGACGACTCGTCTGGAGACTACTTCATGTTCGATCTGAAGCGGCAAG
GGTCCGTGCGACGACGCACAGTTCGTTCGCTGTCGCCGGAGTCGGTGGAA
GAGGTCGAGCCGTCCGCCGCAGCCAAGAAAAAGGGGGGAAAGCCGCGCCA
GAAGAACAAGACCGCGGCGGGGAGGACGGCCGACCCGGCGAAAAAAAGGG
AAGACGGCAACCAACAACGGCAATCACCCTTCGCGGGAGGCGCCCGCCCC
GTCCAAAAAAAGCCGGGGGGCGGCGGCTGGGAAGCGTACGGCCGCCGCTG
GTGCGAATATGGGTGAGAAAACCGGGAGCAGGAAGCGCACCCCTTTGCCG
AGAGCGAAAGAGTCAGCAGAAAAAACAGAGGCGAGGGAGACGGCGACGGC
GAAGCTCCAAGCCAAAAAGGAGCAGAAATGGGAGTCTTTTAAGACAGCGC
GGGGACTCGAGCAGGAAGACCAGGTCGAGCGGGCGGACAGGAGGAAAGAG
AACGACCGCGCCCTGCTGGTGAGTTAGACGACTCGTCTGGAGACTACTTC
ATGTTCGATCTGAAGCGGCAAGGGTCCGTGCGACGACGCACAGTTCGTTC
GCTGTCGCCGGAGTCGGTGGAAGAGGTCGAGCCGTCCGCCGCAGCCAAGA
AAAAGGGGGGAAAGCCGCGCCAGAAGAACAAGACCGCGGCGGGGAGGACG
GCCGACCCGGCGAAAAAAAGGGAAGACGGCAACCAACAACGGCAATCACC
CTTCGCGGGAGGCGCCCGCCCCGTCCAAAAAAAGCCGGGGGGCGGCGGCT
GGGAAGCGTACGGCCGCCGCTGGTGCGAATATGGGTGAGAAAACCGGGAG
CAGGAAGCGCACCCCTTTGCCGAGAGCGAAAGAGTCAGCAGAAAAAACAG
AGGCGAGGGAGACGGCGACGGCGAAGCTCCAAGCCAAAAAGGAGCAGAAA
TGGGAGTCTTTTAAGACAGCGCGGGGACTCGAGCAGGAAGACCAGGTCGA
GCGGGCGGACAGGAGGAAAGAGAACGACCGCGCCCTGCTGGTGA
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