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Homology
BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Match: A0A6H5KN29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN29_9PHAE) HSP 1 Score: 336 bits (862), Expect = 5.280e-109 Identity = 208/304 (68.42%), Postives = 216/304 (71.05%), Query Frame = 1 Query: 1 VHRRNLRLAPGLSAAGFSEDPNQCPGTTVDRGGAGEGGDTGDDTRDDQTFAALKSLSRSGGXXXXXXXXXXXXXXXXL----GCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTDTLSVAESAAGVTELEDQEAATAARLRRLWAQQAMVVGPESGSHGLSGXXXXXXXXXLLLHACAGPGTFLAVRQALEEGVAEPVGGGGAGGDGDRTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPGRRSGNGXXXXGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYVLNFE 900
V RRNLRLAPGLSAAGFSEDPNQ PG TV GAGEGG GDDT +DQTFAALKSLSRSGG L G P DTL+VAE AAG T LEDQ AATAARLR LW +QAMVVGPESG GL XXXXXXXXLLLHACAGPGTFLAVR+ALEEG AEPVGGGGAGGDGD GVGC VGGG TVAALGSLRQHGAYCVVEL MPT + PG RSGN G AK+GWSVASVAFGRVEA DGDPEA+REKLARRATGS+VLNFE
Sbjct: 62 VLRRNLRLAPGLSAAGFSEDPNQWPGNTV---GAGEGGGAGDDTPEDQTFAALKSLSRSGGKKGAGKAAPVPPESVILLTRLGGPQRPGAGAGGAGANVSSADTPPVSNSNN--DQDTLNVAEGAAGPTALEDQAAATAARLRLLWTEQAMVVGPESGPRGLEEGXXXXXXXXLLLHACAGPGTFLAVREALEEGGAEPVGGGGAGGDGDCAGVGCRVGGGATVAALGSLRQHGAYCVVELDMPTPVPPGPRSGNESGGVG-AKEGWSVASVAFGRVEAADGDPEAEREKLARRATGSFVLNFE 359
BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Match: D8LDA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA8_ECTSI) HSP 1 Score: 327 bits (839), Expect = 1.170e-103 Identity = 213/306 (69.61%), Postives = 224/306 (73.20%), Query Frame = 1 Query: 1 VHRRNLRLAPGLSAAGFSEDPNQCPGTTVDRGGAGEGGD-TGDDTRDDQTFAALKSLSRSGGXXXXXXXXXXXXXXXXL----GCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTDTLSVAESAAGVTELEDQEAATAARLRRLWAQQAMVVGPESGSHGLSGXXXXXXXXXLLLHACAGPGTFLAVRQALEEGVAEPVGGGGAGGDGD-RTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPGRRSGNGXXXXGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYVLNFE 900
V RRNLRLAPGLSAAGFSEDPNQCPG TV GAGEGG GDDT +DQTFAALKSLSRSGG L G P XXXXXXXXXXXXXX + DTL+VA+ AAG TE+EDQEAATAARLR LW + AM VGPESG GL LLLHACAGPGT LAVR+ALEEG AEPVGGGGAGGDGD GVGC VGGGTTVAALGSLRQHGAYCVVEL MP T+ PG RSGNG G AK+GWSVASVAFGRVEA DGDPEA+REKLA RATGS+VLNFE
Sbjct: 203 VLRRNLRLAPGLSAAGFSEDPNQCPGNTV---GAGEGGGGAGDDTPEDQTFAALKSLSRSGGKKGAGKAAPVPPESVILLTRLGGPRRPGXXXXXXXXXXXXXXTPPTSNSNS--NQDTLNVAKRAAGPTEVEDQEAATAARLRLLWTEPAMAVGPESGPRGLE----DGGGGGLLLHACAGPGTLLAVREALEEGGAEPVGGGGAGGDGDCARGVGCRVGGGTTVAALGSLRQHGAYCVVELDMPATVPPGPRSGNGSGGVG-AKEGWSVASVAFGRVEAADGDPEAEREKLAHRATGSFVLNFE 498
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-25_001910.1 |
Exons | 1 |
Model size | 1445 |
Cds size | 465 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10073.81.1 >prot_E-fasciculatus_F_contig10073.81.1 ID=prot_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=155bp
MVVGPESGSHGLSGGGGDDDDGGLLLHACAGPGTFLAVRQALEEGVAEPV GGGGAGGDGDRTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPG RRSGNGGGGGGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYV LNFE* back to topmRNA from alignment at E-fasciculatus_F_contig10073:28..1472+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10073.81.1 ID=mRNA_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1445bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:28..1472+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GTACACAGACGAAACCTTCGCTTAGCCCCCGGCCTTTCTGCGGCGGGATT
CTCCGAAGACCCGAACCAATGTCCAGGCACCACAGTCGACCGCGGCGGAG
CCGGCGAGGGTGGTGACACCGGCGACGACACTCGCGACGACCAGACATTC
GCCGCCCTGAAATCTCTCAGCCGGAGCGGCGGCGGAAAGGCGGCGGCGGT
GCCGCCGGAGTCCGTCATTCTGCTCACGAGGCTAGGCTGCCCGCGACGAT
CAGGCGGCGCCGGCAGTGCAAGGGCCGGGGCCTCCACCGCCGCCACACCG
CCGCCGCCGCCGGTGTCAAACAACAACATTAGCACGGACACGCTGAGCGT
GGCGGAGAGCGCCGCCGGTGTGACCGAGCTAGAGGATCAGGAGGCGGCCA
CGGCCGCACGGCTCCGTCGCCTCTGGGCCCAGCAGGCCATGGTGGTAGGG
CCGGAATCTGGGTCCCACGGTTTGAGCGGCGGCGGCGGCGACGACGACGA
CGGCGGATTGCTGCTGCACGCGTGCGCCGGTCCCGGAACGTTCCTCGCGG
TCCGCCAGGCCCTCGAGGAGGGAGTAGCGGAGCCAGTAGGCGGCGGAGGG
GCTGGGGGCGACGGCGATCGCACGGGGGTAGGGTGCACGGTCGGGGGGGG
CACCACCGTTGCGGCGCTCGGAAGCCTGAGGCAGCACGGCGCGTACTGCG
TGGTGGAGCTAGGCATGCCCACCACCATGCGACCGGGGCGCAGAAGCGGC
AACGGGGGCGGCGGCGGCGGCAGGGCGAAGGACGGCTGGTCGGTGGCGAG
TGTCGCCTTTGGCAGGGTGGAGGCGGTCGATGGGGATCCGGAGGCGCAGA
GGGAGAAGCTGGCTCGCAGGGCAACTGGGAGCTACGTGCTCAACTTTGAG
TAAAGCTGTTGTTTGATGTACAGAACCAGGCCATATAGGACATGACTTCA
TTGCTTTGTGGATAGAGGTGGAGCTGTTGCGTGTTTGTAAGGAAGAAGCG
AGGCATTTGCGTCTATCGGGTGTGGCTTGTGTGTGTTTTTTTCTGTCCGA
AGCGATGGGTGCACTGCGTGGTCCAGTTCAAGTTTTGTTGGTACACAGCA
GTTGGCACGTGCGAGGCGGAGCTGTGCGTGTTGTCAGTCAGGCGGACGTC
AGCTTGTTGCGGTGGAGAGTCGATGTTTTGTCCGTGTTTTTTTTTTGCAA
GGGATATTTTTTTCCGAAGTATGAACGGGAAAGATTGGGGTGGTGATGAA
CGATTGCTGGGCGCATACCCTAGACATCCCCCGACTGTTCTCGGCAAATA
AATGTCGTAAGTAGCTTGGAGTGTCCCAGGAAATGTTTCACATCCTGTAT
GCATGCAACAACACTTGGGTAGGGGCTCAACTTTTCACCCAAGATTCTGA
CCTAGTAGTTTGTTTGGAAACAACTAGTTGCACAAGATTCTAGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10073:28..1472+ >mRNA_E-fasciculatus_F_contig10073.81.1 ID=mRNA_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:28..1472+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGTGGTAGGGCCGGAATCTGGGTCCCACGGTTTGAGCGGCGGCGGCGG CGACGACGACGACGGCGGATTGCTGCTGCACGCGTGCGCCGGTCCCGGAA CGTTCCTCGCGGTCCGCCAGGCCCTCGAGGAGGGAGTAGCGGAGCCAGTA GGCGGCGGAGGGGCTGGGGGCGACGGCGATCGCACGGGGGTAGGGTGCAC GGTCGGGGGGGGCACCACCGTTGCGGCGCTCGGAAGCCTGAGGCAGCACG GCGCGTACTGCGTGGTGGAGCTAGGCATGCCCACCACCATGCGACCGGGG CGCAGAAGCGGCAACGGGGGCGGCGGCGGCGGCAGGGCGAAGGACGGCTG GTCGGTGGCGAGTGTCGCCTTTGGCAGGGTGGAGGCGGTCGATGGGGATC CGGAGGCGCAGAGGGAGAAGCTGGCTCGCAGGGCAACTGGGAGCTACGTG CTCAACTTTGAGTAAATGGTGGTAGGGCCGGAATCTGGGTCCCACGGTTT GAGCGGCGGCGGCGGCGACGACGACGACGGCGGATTGCTGCTGCACGCGT GCGCCGGTCCCGGAACGTTCCTCGCGGTCCGCCAGGCCCTCGAGGAGGGA GTAGCGGAGCCAGTAGGCGGCGGAGGGGCTGGGGGCGACGGCGATCGCAC GGGGGTAGGGTGCACGGTCGGGGGGGGCACCACCGTTGCGGCGCTCGGAA GCCTGAGGCAGCACGGCGCGTACTGCGTGGTGGAGCTAGGCATGCCCACC ACCATGCGACCGGGGCGCAGAAGCGGCAACGGGGGCGGCGGCGGCGGCAG GGCGAAGGACGGCTGGTCGGTGGCGAGTGTCGCCTTTGGCAGGGTGGAGG CGGTCGATGGGGATCCGGAGGCGCAGAGGGAGAAGCTGGCTCGCAGGGCA ACTGGGAGCTACGTGCTCAACTTTGAGTAA back to top
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