mRNA_E-fasciculatus_F_contig10073.81.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10073.81.1
Unique NamemRNA_E-fasciculatus_F_contig10073.81.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Match: A0A6H5KN29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN29_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 5.280e-109
Identity = 208/304 (68.42%), Postives = 216/304 (71.05%), Query Frame = 1 
Query:    1 VHRRNLRLAPGLSAAGFSEDPNQCPGTTVDRGGAGEGGDTGDDTRDDQTFAALKSLSRSGGXXXXXXXXXXXXXXXXL----GCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTDTLSVAESAAGVTELEDQEAATAARLRRLWAQQAMVVGPESGSHGLSGXXXXXXXXXLLLHACAGPGTFLAVRQALEEGVAEPVGGGGAGGDGDRTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPGRRSGNGXXXXGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYVLNFE 900
            V RRNLRLAPGLSAAGFSEDPNQ PG TV   GAGEGG  GDDT +DQTFAALKSLSRSGG                L    G P                               DTL+VAE AAG T LEDQ AATAARLR LW +QAMVVGPESG  GL   XXXXXXXXLLLHACAGPGTFLAVR+ALEEG AEPVGGGGAGGDGD  GVGC VGGG TVAALGSLRQHGAYCVVEL MPT + PG RSGN     G AK+GWSVASVAFGRVEA DGDPEA+REKLARRATGS+VLNFE
Sbjct:   62 VLRRNLRLAPGLSAAGFSEDPNQWPGNTV---GAGEGGGAGDDTPEDQTFAALKSLSRSGGKKGAGKAAPVPPESVILLTRLGGPQRPGAGAGGAGANVSSADTPPVSNSNN--DQDTLNVAEGAAGPTALEDQAAATAARLRLLWTEQAMVVGPESGPRGLEEGXXXXXXXXLLLHACAGPGTFLAVREALEEGGAEPVGGGGAGGDGDCAGVGCRVGGGATVAALGSLRQHGAYCVVELDMPTPVPPGPRSGNESGGVG-AKEGWSVASVAFGRVEAADGDPEAEREKLARRATGSFVLNFE 359
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BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Match: D8LDA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA8_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.170e-103
Identity = 213/306 (69.61%), Postives = 224/306 (73.20%), Query Frame = 1 
Query:    1 VHRRNLRLAPGLSAAGFSEDPNQCPGTTVDRGGAGEGGD-TGDDTRDDQTFAALKSLSRSGGXXXXXXXXXXXXXXXXL----GCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTDTLSVAESAAGVTELEDQEAATAARLRRLWAQQAMVVGPESGSHGLSGXXXXXXXXXLLLHACAGPGTFLAVRQALEEGVAEPVGGGGAGGDGD-RTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPGRRSGNGXXXXGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYVLNFE 900
            V RRNLRLAPGLSAAGFSEDPNQCPG TV   GAGEGG   GDDT +DQTFAALKSLSRSGG                L    G P    XXXXXXXXXXXXXX           + DTL+VA+ AAG TE+EDQEAATAARLR LW + AM VGPESG  GL           LLLHACAGPGT LAVR+ALEEG AEPVGGGGAGGDGD   GVGC VGGGTTVAALGSLRQHGAYCVVEL MP T+ PG RSGNG    G AK+GWSVASVAFGRVEA DGDPEA+REKLA RATGS+VLNFE
Sbjct:  203 VLRRNLRLAPGLSAAGFSEDPNQCPGNTV---GAGEGGGGAGDDTPEDQTFAALKSLSRSGGKKGAGKAAPVPPESVILLTRLGGPRRPGXXXXXXXXXXXXXXTPPTSNSNS--NQDTLNVAKRAAGPTEVEDQEAATAARLRLLWTEPAMAVGPESGPRGLE----DGGGGGLLLHACAGPGTLLAVREALEEGGAEPVGGGGAGGDGDCARGVGCRVGGGTTVAALGSLRQHGAYCVVELDMPATVPPGPRSGNGSGGVG-AKEGWSVASVAFGRVEAADGDPEAEREKLAHRATGSFVLNFE 498
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN29_9PHAE5.280e-10968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDA8_ECTSI1.170e-10369.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10073contigE-fasciculatus_F_contig10073:28..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001910.1
Exons1
Model size1445
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10073.81.1prot_E-fasciculatus_F_contig10073.81.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10073 466..930 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.1798556-UTR-E-fasciculatus_F_contig10073:27..4651622927509.1798556-UTR-E-fasciculatus_F_contig10073:27..465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 28..465 +
1695995570.3144336-UTR-E-fasciculatus_F_contig10073:27..4651695995570.3144336-UTR-E-fasciculatus_F_contig10073:27..465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 28..465 +
1622927509.2480183-UTR-E-fasciculatus_F_contig10073:930..14721622927509.2480183-UTR-E-fasciculatus_F_contig10073:930..1472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 931..1472 +
1695995570.3807473-UTR-E-fasciculatus_F_contig10073:930..14721695995570.3807473-UTR-E-fasciculatus_F_contig10073:930..1472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 931..1472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.2230968-CDS-E-fasciculatus_F_contig10073:465..9301622927509.2230968-CDS-E-fasciculatus_F_contig10073:465..930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 466..930 +
1695995570.3719609-CDS-E-fasciculatus_F_contig10073:465..9301695995570.3719609-CDS-E-fasciculatus_F_contig10073:465..930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 466..930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10073.81.1

>prot_E-fasciculatus_F_contig10073.81.1 ID=prot_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=155bp
MVVGPESGSHGLSGGGGDDDDGGLLLHACAGPGTFLAVRQALEEGVAEPV
GGGGAGGDGDRTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPG
RRSGNGGGGGGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYV
LNFE*
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mRNA from alignment at E-fasciculatus_F_contig10073:28..1472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10073.81.1 ID=mRNA_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1445bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:28..1472+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTACACAGACGAAACCTTCGCTTAGCCCCCGGCCTTTCTGCGGCGGGATT
CTCCGAAGACCCGAACCAATGTCCAGGCACCACAGTCGACCGCGGCGGAG
CCGGCGAGGGTGGTGACACCGGCGACGACACTCGCGACGACCAGACATTC
GCCGCCCTGAAATCTCTCAGCCGGAGCGGCGGCGGAAAGGCGGCGGCGGT
GCCGCCGGAGTCCGTCATTCTGCTCACGAGGCTAGGCTGCCCGCGACGAT
CAGGCGGCGCCGGCAGTGCAAGGGCCGGGGCCTCCACCGCCGCCACACCG
CCGCCGCCGCCGGTGTCAAACAACAACATTAGCACGGACACGCTGAGCGT
GGCGGAGAGCGCCGCCGGTGTGACCGAGCTAGAGGATCAGGAGGCGGCCA
CGGCCGCACGGCTCCGTCGCCTCTGGGCCCAGCAGGCCATGGTGGTAGGG
CCGGAATCTGGGTCCCACGGTTTGAGCGGCGGCGGCGGCGACGACGACGA
CGGCGGATTGCTGCTGCACGCGTGCGCCGGTCCCGGAACGTTCCTCGCGG
TCCGCCAGGCCCTCGAGGAGGGAGTAGCGGAGCCAGTAGGCGGCGGAGGG
GCTGGGGGCGACGGCGATCGCACGGGGGTAGGGTGCACGGTCGGGGGGGG
CACCACCGTTGCGGCGCTCGGAAGCCTGAGGCAGCACGGCGCGTACTGCG
TGGTGGAGCTAGGCATGCCCACCACCATGCGACCGGGGCGCAGAAGCGGC
AACGGGGGCGGCGGCGGCGGCAGGGCGAAGGACGGCTGGTCGGTGGCGAG
TGTCGCCTTTGGCAGGGTGGAGGCGGTCGATGGGGATCCGGAGGCGCAGA
GGGAGAAGCTGGCTCGCAGGGCAACTGGGAGCTACGTGCTCAACTTTGAG
TAAAGCTGTTGTTTGATGTACAGAACCAGGCCATATAGGACATGACTTCA
TTGCTTTGTGGATAGAGGTGGAGCTGTTGCGTGTTTGTAAGGAAGAAGCG
AGGCATTTGCGTCTATCGGGTGTGGCTTGTGTGTGTTTTTTTCTGTCCGA
AGCGATGGGTGCACTGCGTGGTCCAGTTCAAGTTTTGTTGGTACACAGCA
GTTGGCACGTGCGAGGCGGAGCTGTGCGTGTTGTCAGTCAGGCGGACGTC
AGCTTGTTGCGGTGGAGAGTCGATGTTTTGTCCGTGTTTTTTTTTTGCAA
GGGATATTTTTTTCCGAAGTATGAACGGGAAAGATTGGGGTGGTGATGAA
CGATTGCTGGGCGCATACCCTAGACATCCCCCGACTGTTCTCGGCAAATA
AATGTCGTAAGTAGCTTGGAGTGTCCCAGGAAATGTTTCACATCCTGTAT
GCATGCAACAACACTTGGGTAGGGGCTCAACTTTTCACCCAAGATTCTGA
CCTAGTAGTTTGTTTGGAAACAACTAGTTGCACAAGATTCTAGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10073:28..1472+

>mRNA_E-fasciculatus_F_contig10073.81.1 ID=mRNA_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:28..1472+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTAGGGCCGGAATCTGGGTCCCACGGTTTGAGCGGCGGCGGCGG
CGACGACGACGACGGCGGATTGCTGCTGCACGCGTGCGCCGGTCCCGGAA
CGTTCCTCGCGGTCCGCCAGGCCCTCGAGGAGGGAGTAGCGGAGCCAGTA
GGCGGCGGAGGGGCTGGGGGCGACGGCGATCGCACGGGGGTAGGGTGCAC
GGTCGGGGGGGGCACCACCGTTGCGGCGCTCGGAAGCCTGAGGCAGCACG
GCGCGTACTGCGTGGTGGAGCTAGGCATGCCCACCACCATGCGACCGGGG
CGCAGAAGCGGCAACGGGGGCGGCGGCGGCGGCAGGGCGAAGGACGGCTG
GTCGGTGGCGAGTGTCGCCTTTGGCAGGGTGGAGGCGGTCGATGGGGATC
CGGAGGCGCAGAGGGAGAAGCTGGCTCGCAGGGCAACTGGGAGCTACGTG
CTCAACTTTGAGTAAATGGTGGTAGGGCCGGAATCTGGGTCCCACGGTTT
GAGCGGCGGCGGCGGCGACGACGACGACGGCGGATTGCTGCTGCACGCGT
GCGCCGGTCCCGGAACGTTCCTCGCGGTCCGCCAGGCCCTCGAGGAGGGA
GTAGCGGAGCCAGTAGGCGGCGGAGGGGCTGGGGGCGACGGCGATCGCAC
GGGGGTAGGGTGCACGGTCGGGGGGGGCACCACCGTTGCGGCGCTCGGAA
GCCTGAGGCAGCACGGCGCGTACTGCGTGGTGGAGCTAGGCATGCCCACC
ACCATGCGACCGGGGCGCAGAAGCGGCAACGGGGGCGGCGGCGGCGGCAG
GGCGAAGGACGGCTGGTCGGTGGCGAGTGTCGCCTTTGGCAGGGTGGAGG
CGGTCGATGGGGATCCGGAGGCGCAGAGGGAGAAGCTGGCTCGCAGGGCA
ACTGGGAGCTACGTGCTCAACTTTGAGTAA
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