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Homology
BLAST of mRNA_E-fasciculatus_F_contig10073.82.1 vs. uniprot
Match: A0A6H5KPR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR2_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.570e-32 Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = -1 Query: 506 AGGRSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLELTS 703
AGGRSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLEL S
Sbjct: 153 AGGRSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLELCS 218
BLAST of mRNA_E-fasciculatus_F_contig10073.82.1 vs. uniprot
Match: D8LDA7_ECTSI (LanC lantibiotic synthetase component C-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA7_ECTSI) HSP 1 Score: 121 bits (303), Expect = 6.490e-28 Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = -1 Query: 506 RSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLELTS 694
RSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSL L S
Sbjct: 548 RSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLALCS 610
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 715 |
| Cds size | 435 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10073.82.1 >prot_E-fasciculatus_F_contig10073.82.1 ID=prot_E-fasciculatus_F_contig10073.82.1|Name=mRNA_E-fasciculatus_F_contig10073.82.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MHDTTSEGKPPIFDRPRVPAAHLSHGTRCPPRSRVFEAPHQPTTDNSSNR
QQGRSPGVLSSMWHTPPHTRGSKHRRQTALPTKRNAAMAFRPPYDTRSPT
SRGREHHRTSHALFQPKGNITSAVSCPVPHMTTHATTASRGQLK* back to topmRNA from alignment at E-fasciculatus_F_contig10073:3098..3812+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10073.82.1 ID=mRNA_E-fasciculatus_F_contig10073.82.1|Name=mRNA_E-fasciculatus_F_contig10073.82.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=715bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:3098..3812+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCGTCAGGCGCTACATTCTATGAGAACAGAGGTTGGTTAGATCTTGAC
CGGCCGCGGGGTGGTGCAAAAAAAACGCCCGAGGGTCGATGCACGACACC
ACCAGCGAAGGAAAGCCACCCATTTTCGATCGTCCAAGGGTCCCCGCGGC
GCATCTGTCCCATGGCACACGCTGCCCGCCAAGGTCACGAGTTTTCGAAG
CACCACATCAGCCAACGACGGACAACTCTTCCAACCGACAGCAAGGAAGG
TCACCAGGTGTTCTGTCCTCCATGTGGCACACGCCGCCGCACACACGAGG
TTCGAAGCACCGACGACAGACAGCCCTTCCGACCAAAAGGAACGCCGCCA
TGGCTTTCCGTCCCCCATATGACACACGCTCGCCCACGTCACGAGGTCGG
GAGCACCACCGCACCAGCCATGCCCTCTTCCAACCCAAAGGGAACATCAC
CTCGGCAGTGTCCTGTCCAGTCCCCCATATGACGACACACGCCACGACCG
CGTCACGAGGTCAGCTCAAGTGACGGGAACCACGCGTGCTCGCCCGCCCC
TGCCTCCGACACGCAGCAGTCCGCTAGGAACGCCGCGGACCCCGCGAGCC
CCTCGAACAGCGACATGGGCCTGTCCGGCACCGCTTGCGACGGCATCTCG
CCGCCGGCGCCGCAGGCGCCGCCGCTGCCGACGGAGTGGGACCTACCCCC
GGCCCCGGCCCGGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10073:3098..3812+ >mRNA_E-fasciculatus_F_contig10073.82.1 ID=mRNA_E-fasciculatus_F_contig10073.82.1|Name=mRNA_E-fasciculatus_F_contig10073.82.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:3098..3812+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGACACCACCAGCGAAGGAAAGCCACCCATTTTCGATCGTCCAAG
GGTCCCCGCGGCGCATCTGTCCCATGGCACACGCTGCCCGCCAAGGTCAC
GAGTTTTCGAAGCACCACATCAGCCAACGACGGACAACTCTTCCAACCGA
CAGCAAGGAAGGTCACCAGGTGTTCTGTCCTCCATGTGGCACACGCCGCC
GCACACACGAGGTTCGAAGCACCGACGACAGACAGCCCTTCCGACCAAAA
GGAACGCCGCCATGGCTTTCCGTCCCCCATATGACACACGCTCGCCCACG
TCACGAGGTCGGGAGCACCACCGCACCAGCCATGCCCTCTTCCAACCCAA
AGGGAACATCACCTCGGCAGTGTCCTGTCCAGTCCCCCATATGACGACAC
ACGCCACGACCGCGTCACGAGGTCAGCTCAAGTGAATGCACGACACCACC
AGCGAAGGAAAGCCACCCATTTTCGATCGTCCAAGGGTCCCCGCGGCGCA
TCTGTCCCATGGCACACGCTGCCCGCCAAGGTCACGAGTTTTCGAAGCAC
CACATCAGCCAACGACGGACAACTCTTCCAACCGACAGCAAGGAAGGTCA
CCAGGTGTTCTGTCCTCCATGTGGCACACGCCGCCGCACACACGAGGTTC
GAAGCACCGACGACAGACAGCCCTTCCGACCAAAAGGAACGCCGCCATGG
CTTTCCGTCCCCCATATGACACACGCTCGCCCACGTCACGAGGTCGGGAG
CACCACCGCACCAGCCATGCCCTCTTCCAACCCAAAGGGAACATCACCTC
GGCAGTGTCCTGTCCAGTCCCCCATATGACGACACACGCCACGACCGCGT
CACGAGGTCAGCTCAAGTGA back to top
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