mRNA_E-fasciculatus_F_contig10073.82.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10073.82.1
Unique NamemRNA_E-fasciculatus_F_contig10073.82.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10073.82.1 vs. uniprot
Match: A0A6H5KPR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR2_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.570e-32
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = -1 
Query:  506 AGGRSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLELTS 703
            AGGRSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLEL S
Sbjct:  153 AGGRSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLELCS 218
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BLAST of mRNA_E-fasciculatus_F_contig10073.82.1 vs. uniprot
Match: D8LDA7_ECTSI (LanC lantibiotic synthetase component C-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA7_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.490e-28
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = -1 
Query:  506 RSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLELTS 694
            RSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSL L S
Sbjct:  548 RSHSVGSGGACGAGGEMPSQAVPDRPMSLFEGLAGSAAFLADCCVSEAGAGEHAWFPSLALCS 610
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10073.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPR2_9PHAE1.570e-3298.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDA7_ECTSI6.490e-2896.83LanC lantibiotic synthetase component C-like 2 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10073contigE-fasciculatus_F_contig10073:3098..3812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10073.82.1prot_E-fasciculatus_F_contig10073.82.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10073 3186..3620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.0919044-UTR-E-fasciculatus_F_contig10073:3097..31851622927509.0919044-UTR-E-fasciculatus_F_contig10073:3097..3185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 3098..3185 +
1695995570.2633128-UTR-E-fasciculatus_F_contig10073:3097..31851695995570.2633128-UTR-E-fasciculatus_F_contig10073:3097..3185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 3098..3185 +
1622927509.120169-UTR-E-fasciculatus_F_contig10073:3620..38121622927509.120169-UTR-E-fasciculatus_F_contig10073:3620..3812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 3621..3812 +
1695995570.3009844-UTR-E-fasciculatus_F_contig10073:3620..38121695995570.3009844-UTR-E-fasciculatus_F_contig10073:3620..3812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 3621..3812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.104999-CDS-E-fasciculatus_F_contig10073:3185..36201622927509.104999-CDS-E-fasciculatus_F_contig10073:3185..3620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 3186..3620 +
1695995570.279626-CDS-E-fasciculatus_F_contig10073:3185..36201695995570.279626-CDS-E-fasciculatus_F_contig10073:3185..3620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 3186..3620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10073.82.1

>prot_E-fasciculatus_F_contig10073.82.1 ID=prot_E-fasciculatus_F_contig10073.82.1|Name=mRNA_E-fasciculatus_F_contig10073.82.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=145bp
MHDTTSEGKPPIFDRPRVPAAHLSHGTRCPPRSRVFEAPHQPTTDNSSNR
QQGRSPGVLSSMWHTPPHTRGSKHRRQTALPTKRNAAMAFRPPYDTRSPT
SRGREHHRTSHALFQPKGNITSAVSCPVPHMTTHATTASRGQLK*
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mRNA from alignment at E-fasciculatus_F_contig10073:3098..3812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10073.82.1 ID=mRNA_E-fasciculatus_F_contig10073.82.1|Name=mRNA_E-fasciculatus_F_contig10073.82.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=715bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:3098..3812+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCGTCAGGCGCTACATTCTATGAGAACAGAGGTTGGTTAGATCTTGAC
CGGCCGCGGGGTGGTGCAAAAAAAACGCCCGAGGGTCGATGCACGACACC
ACCAGCGAAGGAAAGCCACCCATTTTCGATCGTCCAAGGGTCCCCGCGGC
GCATCTGTCCCATGGCACACGCTGCCCGCCAAGGTCACGAGTTTTCGAAG
CACCACATCAGCCAACGACGGACAACTCTTCCAACCGACAGCAAGGAAGG
TCACCAGGTGTTCTGTCCTCCATGTGGCACACGCCGCCGCACACACGAGG
TTCGAAGCACCGACGACAGACAGCCCTTCCGACCAAAAGGAACGCCGCCA
TGGCTTTCCGTCCCCCATATGACACACGCTCGCCCACGTCACGAGGTCGG
GAGCACCACCGCACCAGCCATGCCCTCTTCCAACCCAAAGGGAACATCAC
CTCGGCAGTGTCCTGTCCAGTCCCCCATATGACGACACACGCCACGACCG
CGTCACGAGGTCAGCTCAAGTGACGGGAACCACGCGTGCTCGCCCGCCCC
TGCCTCCGACACGCAGCAGTCCGCTAGGAACGCCGCGGACCCCGCGAGCC
CCTCGAACAGCGACATGGGCCTGTCCGGCACCGCTTGCGACGGCATCTCG
CCGCCGGCGCCGCAGGCGCCGCCGCTGCCGACGGAGTGGGACCTACCCCC
GGCCCCGGCCCGGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10073:3098..3812+

>mRNA_E-fasciculatus_F_contig10073.82.1 ID=mRNA_E-fasciculatus_F_contig10073.82.1|Name=mRNA_E-fasciculatus_F_contig10073.82.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:3098..3812+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGACACCACCAGCGAAGGAAAGCCACCCATTTTCGATCGTCCAAG
GGTCCCCGCGGCGCATCTGTCCCATGGCACACGCTGCCCGCCAAGGTCAC
GAGTTTTCGAAGCACCACATCAGCCAACGACGGACAACTCTTCCAACCGA
CAGCAAGGAAGGTCACCAGGTGTTCTGTCCTCCATGTGGCACACGCCGCC
GCACACACGAGGTTCGAAGCACCGACGACAGACAGCCCTTCCGACCAAAA
GGAACGCCGCCATGGCTTTCCGTCCCCCATATGACACACGCTCGCCCACG
TCACGAGGTCGGGAGCACCACCGCACCAGCCATGCCCTCTTCCAACCCAA
AGGGAACATCACCTCGGCAGTGTCCTGTCCAGTCCCCCATATGACGACAC
ACGCCACGACCGCGTCACGAGGTCAGCTCAAGTGAATGCACGACACCACC
AGCGAAGGAAAGCCACCCATTTTCGATCGTCCAAGGGTCCCCGCGGCGCA
TCTGTCCCATGGCACACGCTGCCCGCCAAGGTCACGAGTTTTCGAAGCAC
CACATCAGCCAACGACGGACAACTCTTCCAACCGACAGCAAGGAAGGTCA
CCAGGTGTTCTGTCCTCCATGTGGCACACGCCGCCGCACACACGAGGTTC
GAAGCACCGACGACAGACAGCCCTTCCGACCAAAAGGAACGCCGCCATGG
CTTTCCGTCCCCCATATGACACACGCTCGCCCACGTCACGAGGTCGGGAG
CACCACCGCACCAGCCATGCCCTCTTCCAACCCAAAGGGAACATCACCTC
GGCAGTGTCCTGTCCAGTCCCCCATATGACGACACACGCCACGACCGCGT
CACGAGGTCAGCTCAAGTGA
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