Homology
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)
HSP 1 Score: 112 bits (280), Expect = 2.980e-27
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 213
LVQAQ ARRI+ RLAG TL PVIWNFVAPGLS GR +SVALAMVVE ERARLKF SA+YWD+VANVT+AG+
Sbjct: 245 LVQAQEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGE 315
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI)
HSP 1 Score: 85.1 bits (209), Expect = 9.460e-20
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 19 ARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 210
AR I+ LAG TL PVIWNFVAPGLS GR +SVA AMV+E E ARLK SA+ WD+VAN T+AG
Sbjct: 56 ARCILDCLAGFTLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAAG 119
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)
HSP 1 Score: 82.4 bits (202), Expect = 1.060e-16
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 LVQAQYARRII---------YRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 216
LV AQ ARRII LAG T+ P++W +AP LS GR +SVALAM+++ E ARLKF SAEYWD+ ANVT+ G++
Sbjct: 495 LVDAQEARRIIDSILDRKYPVLLAGYTMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTATGQT 575
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A5D3YIY6_9BACT (DNA topoisomerase 1 n=1 Tax=Fodinibius salinus TaxID=860790 RepID=A0A5D3YIY6_9BACT)
HSP 1 Score: 81.3 bits (199), Expect = 2.670e-16
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 216
LV AQ ARRII RLAG T+ P++W +APGLS GR +SVA+ +VE ER R+KF SA YWD+ A + +S
Sbjct: 144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRSARYWDLKAKLHKLNES 215
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
UPI00197AE495 (type I DNA topoisomerase n=2 Tax=Aliifodinibius TaxID=1397107 RepID=UPI00197AE495)
HSP 1 Score: 80.9 bits (198), Expect = 3.640e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVT 201
LV AQ ARRII RLAG T+ P++W +APGLS GR +SVA+ +VE ER R+KF SA YWD+ A ++
Sbjct: 144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFMVERERERMKFRSARYWDLKAQLS 210
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A7V5M4C3_9BACT (DNA topoisomerase 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M4C3_9BACT)
HSP 1 Score: 80.9 bits (198), Expect = 3.670e-16
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
LV AQ RRI+ RLAG TL P++W +APGLS GR +SVALAM+VE E RL+F SA+YW ++A +
Sbjct: 351 LVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALAMIVERELERLRFRSAQYWSILAQL 416
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A2A2GBY7_9BACT (DNA topoisomerase 1 n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2GBY7_9BACT)
HSP 1 Score: 80.5 bits (197), Expect = 4.980e-16
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
LV AQ ARRII RLAG T+ P++W +APGLS GR +SVA+ +VE ER R+KF SA YWD+ A +
Sbjct: 144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRSARYWDLKAQL 209
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A6C1P3Z8_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P3Z8_9BACT)
HSP 1 Score: 80.5 bits (197), Expect = 4.980e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 210
LV AQ ARRII RLAG T+ P++W +APGLS GR +SVA+ VV+ ER R++F S YWD+ A + + G
Sbjct: 144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVKFVVDRERERMRFRSGSYWDLTARLATNG 213
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A7J7IIF0_9RHOD (Toprim domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIF0_9RHOD)
HSP 1 Score: 79.0 bits (193), Expect = 1.250e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
LV AQ RRI+ RLAG TL P++W +APGLS GR +SVAL+M+VE E RL+F SA YW ++A +
Sbjct: 282 LVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALSMIVERELERLRFRSARYWSILAKL 347
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match:
A0A1M4VVU8_9BACT (DNA topoisomerase 1 n=2 Tax=Aliifodinibius TaxID=1397107 RepID=A0A1M4VVU8_9BACT)
HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
LV AQ ARRII RLAG T+ P++W +APGLS GR +SVA+ +VE ER R+KF +A YWD+ A +
Sbjct: 144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRTARYWDLKATL 209
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90 )
Total hits: 25
0 1 Expect = 2.98e-27 / Id = 80.28 Expect = 9.46e-20 / Id = 68.75 Expect = 1.06e-16 / Id = 54.32 Expect = 2.67e-16 / Id = 55.56 Expect = 3.64e-16 / Id = 58.21 Expect = 3.67e-16 / Id = 59.09 Expect = 4.98e-16 / Id = 59.09 Expect = 4.98e-16 / Id = 54.29 Expect = 1.25e-15 / Id = 57.58 Expect = 1.27e-15 / Id = 57.58 Sequence D8LDU2_ECTSI D7G723_ECTSI A0A835Z3T3_9STRA A0A5D3YIY6_9BACT UPI00197AE495 A0A7V5M4C3_9BACT A0A2A2GBY7_9BACT A0A6C1P3Z8_9BACT A0A7J7IIF0_9RHOD A0A1M4VVU8_9BACT
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10072.80.1
>prot_E-fasciculatus_F_contig10072.80.1 ID=prot_E-fasciculatus_F_contig10072.80.1|Name=mRNA_E-fasciculatus_F_contig10072.80.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERA RLKFTSAEYWDMVANVTSAGKS back to top mRNA from alignment at E-fasciculatus_F_contig10072:78..764-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10072.80.1 ID=mRNA_E-fasciculatus_F_contig10072.80.1|Name=mRNA_E-fasciculatus_F_contig10072.80.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=687bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..764- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)CTCGTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTAGCTGG GTC
AGAGGGAGGGGAAAAGAGAGAGTCATATCCACAATGGAGTGGCATTCGCC
GGGCCAGCGGGGTCTGGGACGTTTTTATGGGGAACCGTGGAAGTCTGGTG
GTGTTCCATGGATTTGATCGATGTTGCAGGTTGGGCGAGGGGGGTGGCTG
ATGCTCCTCCCGCTGTTGCACCTGTTCTTTTGTATCTTGGTAAATGTGCG
ACACGGTTCTCATTACAATCGCGCCGCCCCCCCATCTGATTTGGCCACAG
CAACCGCAAGGATGATGGCCAGCTGCTGGTTCATCCTTGTTTATTTTTGC
CTATAGCCAGGGCCGGTGAAAACCCGGCATGTCGCTCCGTCCTGGCATGC
GAAGTATATCGTCCAACGAACTACGGCGTGCGTTCACATGAGTACCCCCC
CTTGCCCCGTCGTGCGCAACAATGCGTGTCCCCCTTCCCCGTGCCCGTGC
GTGCTGGTTCACACAGCTGCACCCTGATCCCGGTCATCTGGAACTTCGTC
GCTCCCGGGCTTAGCACCGGACGGGCGAAGAGCGTAGCGCTGGCGATGGT
GGTCGAGCACGAGCGCGCGCGCCTCAAGTTCACGTCCGCGGAGTACTGGG
ACATGGTCGCTAACGTTACCTCCGCAGGGAAGTCT GG back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10072:78..764-
>mRNA_E-fasciculatus_F_contig10072.80.1 ID=mRNA_E-fasciculatus_F_contig10072.80.1|Name=mRNA_E-fasciculatus_F_contig10072.80.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..764- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CTCGTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTAGCTGGCTC GTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTAGCTGGCTGCAC CCTGATCCCGGTCATCTGGAACTTCGTCGCTCCCGGGCTTAGCACCGGAC GGGCGAAGAGCGTAGCGCTGGCGATGGTGGTCGAGCACGAGCGCGCGCGC CTCAAGTTCACGTCCGCGGAGTACTGGGACATGGTCGCTAACGTTACCTC CGCAGGGAAGTCTCTGCACCCTGATCCCGGTCATCTGGAACTTCGTCGCT CCCGGGCTTAGCACCGGACGGGCGAAGAGCGTAGCGCTGGCGATGGTGGT CGAGCACGAGCGCGCGCGCCTCAAGTTCACGTCCGCGGAGTACTGGGACA TGGTCGCTAACGTTACCTCCGCAGGGAAGTCT back to top