mRNA_E-fasciculatus_F_contig10072.80.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10072.80.1
Unique NamemRNA_E-fasciculatus_F_contig10072.80.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.980e-27
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 213
            LVQAQ ARRI+ RLAG TL PVIWNFVAPGLS GR +SVALAMVVE ERARLKF SA+YWD+VANVT+AG+
Sbjct:  245 LVQAQEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGE 315          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 9.460e-20
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   19 ARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 210
            AR I+  LAG TL PVIWNFVAPGLS GR +SVA AMV+E E ARLK  SA+ WD+VAN T+AG
Sbjct:   56 ARCILDCLAGFTLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAAG 119          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.060e-16
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 LVQAQYARRII---------YRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 216
            LV AQ ARRII           LAG T+ P++W  +AP LS GR +SVALAM+++ E ARLKF SAEYWD+ ANVT+ G++
Sbjct:  495 LVDAQEARRIIDSILDRKYPVLLAGYTMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTATGQT 575          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A5D3YIY6_9BACT (DNA topoisomerase 1 n=1 Tax=Fodinibius salinus TaxID=860790 RepID=A0A5D3YIY6_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 2.670e-16
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 216
            LV AQ ARRII RLAG T+ P++W  +APGLS GR +SVA+  +VE ER R+KF SA YWD+ A +    +S
Sbjct:  144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRSARYWDLKAKLHKLNES 215          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: UPI00197AE495 (type I DNA topoisomerase n=2 Tax=Aliifodinibius TaxID=1397107 RepID=UPI00197AE495)

HSP 1 Score: 80.9 bits (198), Expect = 3.640e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVT 201
            LV AQ ARRII RLAG T+ P++W  +APGLS GR +SVA+  +VE ER R+KF SA YWD+ A ++
Sbjct:  144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFMVERERERMKFRSARYWDLKAQLS 210          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A7V5M4C3_9BACT (DNA topoisomerase 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M4C3_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.670e-16
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
            LV AQ  RRI+ RLAG TL P++W  +APGLS GR +SVALAM+VE E  RL+F SA+YW ++A +
Sbjct:  351 LVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALAMIVERELERLRFRSAQYWSILAQL 416          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A2A2GBY7_9BACT (DNA topoisomerase 1 n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2GBY7_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 4.980e-16
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
            LV AQ ARRII RLAG T+ P++W  +APGLS GR +SVA+  +VE ER R+KF SA YWD+ A +
Sbjct:  144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRSARYWDLKAQL 209          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A6C1P3Z8_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P3Z8_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 4.980e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 210
            LV AQ ARRII RLAG T+ P++W  +APGLS GR +SVA+  VV+ ER R++F S  YWD+ A + + G
Sbjct:  144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVKFVVDRERERMRFRSGSYWDLTARLATNG 213          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A7J7IIF0_9RHOD (Toprim domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIF0_9RHOD)

HSP 1 Score: 79.0 bits (193), Expect = 1.250e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
            LV AQ  RRI+ RLAG TL P++W  +APGLS GR +SVAL+M+VE E  RL+F SA YW ++A +
Sbjct:  282 LVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALSMIVERELERLRFRSARYWSILAKL 347          
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Match: A0A1M4VVU8_9BACT (DNA topoisomerase 1 n=2 Tax=Aliifodinibius TaxID=1397107 RepID=A0A1M4VVU8_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 198
            LV AQ ARRII RLAG T+ P++W  +APGLS GR +SVA+  +VE ER R+KF +A YWD+ A +
Sbjct:  144 LVNAQEARRIIDRLAGYTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRTARYWDLKATL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10072.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU2_ECTSI2.980e-2780.28DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
D7G723_ECTSI9.460e-2068.75DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus... [more]
A0A835Z3T3_9STRA1.060e-1654.32DNA topoisomerase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A5D3YIY6_9BACT2.670e-1655.56DNA topoisomerase 1 n=1 Tax=Fodinibius salinus Tax... [more]
UPI00197AE4953.640e-1658.21type I DNA topoisomerase n=2 Tax=Aliifodinibius Ta... [more]
A0A7V5M4C3_9BACT3.670e-1659.09DNA topoisomerase 1 n=2 Tax=cellular organisms Tax... [more]
A0A2A2GBY7_9BACT4.980e-1659.09DNA topoisomerase 1 n=1 Tax=Aliifodinibius sp. WN0... [more]
A0A6C1P3Z8_9BACT4.980e-1654.29DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium... [more]
A0A7J7IIF0_9RHOD1.250e-1557.58Toprim domain-containing protein n=1 Tax=Cyanidioc... [more]
A0A1M4VVU8_9BACT1.270e-1557.58DNA topoisomerase 1 n=2 Tax=Aliifodinibius TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10072contigE-fasciculatus_F_contig10072:78..764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue8.5e-23
Seed eggNOG ortholog2880.D8LDU2
KEGG koko:K03168
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.9794216-CDS-E-fasciculatus_F_contig10072:79..2481622927508.9794216-CDS-E-fasciculatus_F_contig10072:79..248Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 80..248 -
1695995570.2404065-CDS-E-fasciculatus_F_contig10072:79..2481695995570.2404065-CDS-E-fasciculatus_F_contig10072:79..248Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 80..248 -
1622927509.000258-CDS-E-fasciculatus_F_contig10072:717..7641622927509.000258-CDS-E-fasciculatus_F_contig10072:717..764Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 718..764 -
1695995570.2549767-CDS-E-fasciculatus_F_contig10072:717..7641695995570.2549767-CDS-E-fasciculatus_F_contig10072:717..764Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 718..764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10072.80.1prot_E-fasciculatus_F_contig10072.80.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10072 80..764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10072.80.1

>prot_E-fasciculatus_F_contig10072.80.1 ID=prot_E-fasciculatus_F_contig10072.80.1|Name=mRNA_E-fasciculatus_F_contig10072.80.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
LVQAQYARRIIYRLAGCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERA
RLKFTSAEYWDMVANVTSAGKS
back to top

mRNA from alignment at E-fasciculatus_F_contig10072:78..764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10072.80.1 ID=mRNA_E-fasciculatus_F_contig10072.80.1|Name=mRNA_E-fasciculatus_F_contig10072.80.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=687bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..764- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTAGCTGGGTC AGAGGGAGGGGAAAAGAGAGAGTCATATCCACAATGGAGTGGCATTCGCC GGGCCAGCGGGGTCTGGGACGTTTTTATGGGGAACCGTGGAAGTCTGGTG GTGTTCCATGGATTTGATCGATGTTGCAGGTTGGGCGAGGGGGGTGGCTG ATGCTCCTCCCGCTGTTGCACCTGTTCTTTTGTATCTTGGTAAATGTGCG ACACGGTTCTCATTACAATCGCGCCGCCCCCCCATCTGATTTGGCCACAG CAACCGCAAGGATGATGGCCAGCTGCTGGTTCATCCTTGTTTATTTTTGC CTATAGCCAGGGCCGGTGAAAACCCGGCATGTCGCTCCGTCCTGGCATGC GAAGTATATCGTCCAACGAACTACGGCGTGCGTTCACATGAGTACCCCCC CTTGCCCCGTCGTGCGCAACAATGCGTGTCCCCCTTCCCCGTGCCCGTGC GTGCTGGTTCACACAGCTGCACCCTGATCCCGGTCATCTGGAACTTCGTC GCTCCCGGGCTTAGCACCGGACGGGCGAAGAGCGTAGCGCTGGCGATGGT GGTCGAGCACGAGCGCGCGCGCCTCAAGTTCACGTCCGCGGAGTACTGGG ACATGGTCGCTAACGTTACCTCCGCAGGGAAGTCTGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10072:78..764-

>mRNA_E-fasciculatus_F_contig10072.80.1 ID=mRNA_E-fasciculatus_F_contig10072.80.1|Name=mRNA_E-fasciculatus_F_contig10072.80.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..764- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTAGCTGGCTC
GTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTAGCTGGCTGCAC
CCTGATCCCGGTCATCTGGAACTTCGTCGCTCCCGGGCTTAGCACCGGAC
GGGCGAAGAGCGTAGCGCTGGCGATGGTGGTCGAGCACGAGCGCGCGCGC
CTCAAGTTCACGTCCGCGGAGTACTGGGACATGGTCGCTAACGTTACCTC
CGCAGGGAAGTCTCTGCACCCTGATCCCGGTCATCTGGAACTTCGTCGCT
CCCGGGCTTAGCACCGGACGGGCGAAGAGCGTAGCGCTGGCGATGGTGGT
CGAGCACGAGCGCGCGCGCCTCAAGTTCACGTCCGCGGAGTACTGGGACA
TGGTCGCTAACGTTACCTCCGCAGGGAAGTCT
back to top