Homology
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)
HSP 1 Score: 100 bits (248), Expect = 3.300e-19
Identity = 56/117 (47.86%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098
+G W V LEP+ R H + QE L + + + ++ + R TL PVIWNFVAPGLS GR +SVALAMVVE ERARLKF SA+YWD+VANVT+AG+
Sbjct: 200 EGEAISWHLLQV-LEPKVPVKRAVFHEITQEALVKAFEEPGQIDENLVQAQEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGE 315
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI)
HSP 1 Score: 78.6 bits (192), Expect = 2.980e-14
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 937 TLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 1095
TL PVIWNFVAPGLS GR +SVA AMV+E E ARLK SA+ WD+VAN T+AG
Sbjct: 67 TLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAAG 119
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A6H5KEK3_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE)
HSP 1 Score: 74.7 bits (182), Expect = 1.030e-11
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 3
Query: 663 ELYKGYAVDDCNGHVTDLVGKRTDVLAEVRRRPRAGIWLAWTRCASRTPEEGDP----SPGSR----RPRPSGTR*SCITCTTDEDREGKAISWHLLQL 935
ELYKGY VD CNGHVTDLVGKR DV AE++ + + W + P +P + R + + + I TDEDREG+AISWHLLQ+
Sbjct: 124 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKG-----WDVVGVDVENDFKPLYIQNPKKKAIITRLKKASAKCDEIILATDEDREGEAISWHLLQV 217
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)
HSP 1 Score: 73.6 bits (179), Expect = 2.060e-10
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 937 TLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 1101
T+ P++W +AP LS GR +SVALAM+++ E ARLKF SAEYWD+ ANVT+ G++
Sbjct: 521 TMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTATGQT 575
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A7J7IIF0_9RHOD (Toprim domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIF0_9RHOD)
HSP 1 Score: 67.8 bits (164), Expect = 7.010e-9
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 1083
+G W + L PQ R H + ++ + + R+ + + + + R TL P++W +APGLS GR +SVAL+M+VE E RL+F SA YW ++A +
Sbjct: 237 EGEAISWHLVEL-LRPQVPVRRAVFHEITEDAIQEAFRNFREIDMNLVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALSMIVERELERLRFRSARYWSILAKL 347
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A5Q4F9C0_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT)
HSP 1 Score: 68.6 bits (166), Expect = 7.400e-9
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1
Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 1101
+G G W L+P+ R H + ++ + + RD +++ + + R T+ P++W + PGLS GR +SVA+ ++V ER R++F S YWD+ A ++ +G S
Sbjct: 99 EGEGISWH-IVDELKPKIPVKRMVFHEITEDAIQRALRDFREINMDLVDAQEARRIVDRLAGYTISPLLWKKIGPGLSAGRVQSVAVQLLVNRERERMRFRSGSYWDLKAVLSKSGAS 215
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A7V5M4C3_9BACT (DNA topoisomerase 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M4C3_9BACT)
HSP 1 Score: 68.2 bits (165), Expect = 1.080e-8
Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 1
Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 1083
+G W + L+PQ R H + ++ + + + + + + + R TL P++W +APGLS GR +SVALAM+VE E RL+F SA+YW ++A +
Sbjct: 306 EGEAISWHLVEL-LQPQVPVRRAVFHEITEDAIQEAFQSFRDIDMNLVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALAMIVERELERLRFRSAQYWSILAQL 416
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A0P7X7W9_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7X7W9_9BACT)
HSP 1 Score: 67.8 bits (164), Expect = 1.310e-8
Identity = 34/117 (29.06%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 760 QGLGFGWRGPAVHLEP----QRKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098
+G G W V L+P +R H + ++ + + + + + + + R T+ P++W +APGLS GR +SVA+ ++V+ ER R++F S YWD+ A +T +G+
Sbjct: 99 EGEGIAWHILEV-LKPNVPVKRMVFHEITKDAINRALENFRTIDMNLVDAQETRRVVDRLAGYTISPLLWKKIAPGLSAGRVQSVAVELLVQRERERMRFRSGSYWDLRAKLTPSGQ 214
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
A0A2W4J3J0_9PSEU (DNA topoisomerase (Fragment) n=1 Tax=Thermocrispum agreste TaxID=37925 RepID=A0A2W4J3J0_9PSEU)
HSP 1 Score: 67.4 bits (163), Expect = 1.400e-8
Identity = 62/216 (28.70%), Postives = 86/216 (39.81%), Query Frame = 1
Query: 559 RVLVIVESPAKARKITELLK---MAASAXXXXXDEAEGSCT-----RVTPWT----------------------TATDT*RTLSARGRTCWPR*GEDQGLGFGWR-----GPAVHLEPQRKEIHHLVQEGLGQVGRDNPA-LHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098
R LVIVESPAKARKI L + S+ D G+ + PW T D L G+ +G W P V P R+ + H + E + NP L + + R + PV+W + P LS GR +SVA +VVE ER R++FTSA YWD+ A +++ G+
Sbjct: 14 RRLVIVESPAKARKIASYLGRNYVVESSKGHIRDLPRGAADVPAEYKGQPWARLGVDVDNGFEPLYIVTPDKKATVKDLKGKLKDADELYLATDGDREGEAIAWHLIEALKPKV---PVRRMVFHEITEHAIRDAAQNPRDLDTDLVDAQETRRILDRLYGYEVSPVLWKKIMPKLSAGRVQSVATRIVVERERERMRFTSASYWDIAATMSAEGQ 226
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match:
UPI001ACDF18D (Partial DNA topoisomerase 1 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001ACDF18D)
HSP 1 Score: 66.6 bits (161), Expect = 1.770e-8
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 760 QGLGFGWRGPAVHLEPQ---RKEIHH-----LVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVA 1077
+G GW V L+PQ R+ + H +QE LGQ + L +R + R T+ P++W VA GLS GR +SVA+ M+V+ ER R+ F SA YWD+ A
Sbjct: 99 EGESIGWHLTEV-LKPQVPIRRMVFHEITREAIQEALGQTREIDQQL----VRAQETRRILDRLVGYTVSPLLWKKVASGLSAGRVQSVAMQMLVKRERERIAFRSATYWDLKA 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90 )
Total hits: 25
0 1 Expect = 3.30e-19 / Id = 47.86 Expect = 2.98e-14 / Id = 71.70 Expect = 1.03e-11 / Id = 44.44 Expect = 2.06e-10 / Id = 58.18 Expect = 7.01e-9 / Id = 32.14 Expect = 7.40e-9 / Id = 28.81 Expect = 1.08e-8 / Id = 32.14 Expect = 1.31e-8 / Id = 29.06 Expect = 1.40e-8 / Id = 28.70 Expect = 1.77e-8 / Id = 36.84 Sequence D8LDU2_ECTSI D7G723_ECTSI A0A6H5KEK3_9PHAE A0A835Z3T3_9STRA A0A7J7IIF0_9RHOD A0A5Q4F9C0_9BACT A0A7V5M4C3_9BACT A0A0P7X7W9_9BACT A0A2W4J3J0_9PSEU UPI001ACDF18D Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10072.79.1
>prot_E-fasciculatus_F_contig10072.79.1 ID=prot_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
MVHVAVPQQQCQPTAKVQGWKWIAPGSSMLLSRVGRRSGATAVRWRCTGS back to top mRNA from alignment at E-fasciculatus_F_contig10072:78..3722-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10072.79.1 ID=mRNA_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3645bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)CTTC ATGGTACATGTAGCAGTACCACAACAACAATGCCAACCGACCGCCA
AGGTCCAAGGGTGGAAGTGGATTGCGCCGGGCTCTTCGATGCTGCTGTCG
CGGGTCGGCAGACGAAGCGGGGCTACGGCGGTGCGGTGGAGATGTACCG G
TAAGAGTAGGTGTGCGACATCTAGACTTTGCACCGCAGAACCGCGCCGAC
TGCAGTCATCGAACAAGCAGGTGCTGCTGCGCAAGAAGCGGCTGTGTGTT
AAACGGACACCACCATCGCTGGTTTTAACCTACTGCTCTACTACGAGGAG
CCGTGATAACGTAGAGGCGCAAAGCGCATTTGCGGCAGTGATGTTGTTGT
GAACATGTGTGAACATGCACACACATACGTGAGATATCACCCCCCTTTCC
GCCCGCCGGCGCTTGCCACCACCTACAATACAGCAGTAGCAGTGACTTTA
ACCCTCCCAGTACCCAGTCCCTCCGCGGAAAAAAAAGGTCGTAAAAATGC
TCGTCAGCCATTGGTCGAGGAGCTATTGTACAGTCCCTCCAAAGAATCTG
AGCTGCTTGCCAGACAACGGGTGACTTGGCTTCAGTATGAAAAGTGTCCA
CAAAACACGTGAGGACACTTTTCATACTGCAGCCAATTCAGCACTTTCCA
GTTCTCATACGTAGGCGATGTACAGTTTTACGGTTTTACAGCCTTGGGGA
CACGCGGCTTGGGAGATGGTGACAGAAAGTCAGAGGCCGAGGAGAGGCAT
CACACAGCATCTCCCACAGCGTACCACCTCAGCCAAGCATGATAGACCAA
GGGTTCTCACGTGCGTTGCGCACAGCGGTGCCTGGGAAGACTACGGTGTG
GTAAATCGGCATTTGAATCATGTGTCCCCAAAGTGTCCCCAAAAGGGCTT
CCAGTACTACTGTAGGAGGGTTTGAAACGTCTCAACAGAGCAAGTCACTC
GTCGAGCAGCCGTTCAGATACTGGCTGTAAAAGTAAAGACGTAAATGGTG
CCGTCGAGATACATGCATAACTTGCACCATGGTGCGGTTTTAGCGCTAAC
GGCAACAGCACCGGCAAAAAAACATCATACGACAGCGAGTATTTGAACCA
CGTTGAGGTTGGTGACGCTTCGCACAAAATGTGTCTACCGTAGCACTGTA
GCCCTGCCGCCTCATGGTGGCAGCACTGCCCGTCGTTCGGCCGTTGCTGT
TGTCAAAGATCATTGTTGTGGGTTGTGCGCAGGTAGCAGAACGAAGAGAG
AGAAAGAGAGAGAGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTC
TTGTAGAACGCCGACAGCTGGCGGGTTTTCTCAACATGATAGTCCGTATT
CGCAGATGCTCTGCTTGCTGCATTTCTTTGGAACACGTGTTTTGCACTTC
AGTAATGTACGCTTTTGCCCCCGTGCGTGTGACCGTGGTTTTGGCATGTC
TCCTGATCGCCCCCAGGTTCGGCGTGGGCGGCCCGACGTCGTCACCCGGA
CGGGGCCTTGACGCCACTGTCTTCGCCGTCGGCGTGGTGGGGCCCTCTCT
GCTACCGTACAAGTACCGAGGGTTACTACTGCCTGTCGGCAGGCGGTGGC
GGTACGGTGCTTTTGCAACCCTTCATAGTGGCCGCGTCGTCCACGACCTC
TGCTTCGGGTGCAACAAAGGTCAAGGTTGCCGTTGGCGCCAAGAAGTCGA
ACACGACGGCCGCCACTGCCGGCAGAACCGCCCCCCCCTGCAAAAGCCAC
TACCACCACGAGAATGCCTTCGACGGCAGAAAAACACGCCCAAGACGAAG
CCTGTTGCCTCCGCTGCCGCTGCGAAGAAGAAGAGCAAGCCTGCAGCCGC
CAAGTGGAAGGGTTAGAGTTCCAAGAGAGTCCTGGTGA TCGTGGAGTCCC
CGGCCAAGGCTAGGAAAATCACGGAGCTCCTCAAGATGGCCGCCTCTGCC
GGCGGCGGCGGCGGCGACG GCGGAGGCAGAGGCGGAGGGGAGCTGTACAA
GGGTTACGCCGTGGACGACTGCAACGGACACGTGACGGACCTTGTCGGCA
AGAGGACGGACGTGCTGGCCGAGGTGAGGAGAAGACCAAGGGCTGGGATT
TGGTTGGCGTGGAC GTGGGGAGCGTTTATCTGTGTTGTTTTATACCCGAA
CGCGTGTGTTGGTGATTGGCAAACAGTGGCACGACGCGGTGGTGGTGGTG
GTGCGATGAGTACTTGTACAGCCAATGAAGCAGGCCGTGGGCTAAGGTGT
TGTTGTTGTAGTTGTGGTCTTCGTTGTCATCACCATTGTTGGCGAGGCCG
GGGTGATCGTGGAATAGCTTGTTGTTGTCCATGGCCTCGTGCAGCAGCAG
CAGCACAGCAACACTGTACGAGAGCGAACACAACTTGATCGCCCCTCCCC
GCCGCCTCGCCGCCCCTTTCCGTTGCGGCACACCACCCCCGCAAATGTTC
GGGAAATGTCATTCTAGCCGCTGTGCATCTAGAACCCCAGAGGAAGGAGA
TCCATCACCTGGTTCAAGAAGGCCTCGGCCAAGTGGGACGAGATAATCCT
GCATTACATGTACCACCGATGAGGACCGAGAGGGGAAGGCCATCAGCTGG
CACCTCTTGCAG GTACTACTTGCTGGTTCATTGTTTTCACTTTTCGGGAT
TCAGGTATAGCTGTTGTTGATAATTGGCGTTGCGTTGCTGTCAGCCGTGC
TGTTGTCGTTGTCGTCGGTGCTGCCGTTGTCGTTGTTGTTTTGGCCATTT
GTTCATAATACAGTCCATCGATGCATTATGTTCCTCATCAGCCACCAAGC
CTTTGCTGGGCCACTAGTCCACCCTCTCCCTCCATCTTGGTAAGGGTGCG
AGTCACAGCAAGAAGTTATGAGATACACCTCTCGTCTCTGGCTGTGCTTC
GCTCTTCCTCATTATTTTTTTTATGTTGTTTTGAGCAACCAGGACAGATG
GACAAGACCTCGTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTA
GCTGGGTCAGAGGGAGGGGAAAAGAGAGAGTCATATCCACAATGGAGTGG
CATTCGCCGGGCCAGCGGGGTCTGGGACGTTTTTATGGGGAACCGTGGAA
GTCTGGTGGTGTTCCATGGATTTGATCGATGTTGCAGGTTGGGCGAGGGG
GGTGGCTGATGCTCCTCCCGCTGTTGCACCTGTTCTTTTGTATCTTGGTA
AATGTGCGACACGGTTCTCATTACAATCGCGCCGCCCCCCCATCTGATTT
GGCCACAGCAACCGCAAGGATGATGGCCAGCTGCTGGTTCATCCTTGTTT
ATTTTTGCCTATAGCCAGGGCCGGTGAAAACCCGGCATGTCGCTCCGTCC
TGGCATGCGAAGTATATCGTCCAACGAACTACGGCGTGCGTTCACATGAG
TACCCCCCCTTGCCCCGTCGTGCGCAACAATGCGTGTCCCCCTTCCCCGT
GCCCGTGCGTGCTGGTTCACACAGCTGCACCCTGATCCCGGTCATCTGGA
ACTTCGTCGCTCCCGGGCTTAGCACCGGACGGGCGAAGAGCGTAGCGCTG
GCGATGGTGGTCGAGCACGAGCGCGCGCGCCTCAAGTTCACGTCCGCGGA
GTACTGGGACATGGTCGCTAACGTTACCTCCGCAGGGAAGTCTGG back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10072:78..3722-
>mRNA_E-fasciculatus_F_contig10072.79.1 ID=mRNA_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) back to top