mRNA_E-fasciculatus_F_contig10072.79.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10072.79.1
Unique NamemRNA_E-fasciculatus_F_contig10072.79.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.300e-19
Identity = 56/117 (47.86%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098
            +G    W    V LEP+    R   H + QE L +   +   +    ++ +  R         TL PVIWNFVAPGLS GR +SVALAMVVE ERARLKF SA+YWD+VANVT+AG+
Sbjct:  200 EGEAISWHLLQV-LEPKVPVKRAVFHEITQEALVKAFEEPGQIDENLVQAQEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGE 315          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.980e-14
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  937 TLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 1095
            TL PVIWNFVAPGLS GR +SVA AMV+E E ARLK  SA+ WD+VAN T+AG
Sbjct:   67 TLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAAG 119          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A6H5KEK3_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-11
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  663 ELYKGYAVDDCNGHVTDLVGKRTDVLAEVRRRPRAGIWLAWTRCASRTPEEGDP----SPGSR----RPRPSGTR*SCITCTTDEDREGKAISWHLLQL 935
            ELYKGY VD CNGHVTDLVGKR DV AE++ + +      W         +  P    +P  +    R + +  +   I   TDEDREG+AISWHLLQ+
Sbjct:  124 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKG-----WDVVGVDVENDFKPLYIQNPKKKAIITRLKKASAKCDEIILATDEDREGEAISWHLLQV 217          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.060e-10
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  937 TLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 1101
            T+ P++W  +AP LS GR +SVALAM+++ E ARLKF SAEYWD+ ANVT+ G++
Sbjct:  521 TMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTATGQT 575          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A7J7IIF0_9RHOD (Toprim domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIF0_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 7.010e-9
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 1083
            +G    W    + L PQ    R   H + ++ + +  R+   + +  +  +  R         TL P++W  +APGLS GR +SVAL+M+VE E  RL+F SA YW ++A +
Sbjct:  237 EGEAISWHLVEL-LRPQVPVRRAVFHEITEDAIQEAFRNFREIDMNLVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALSMIVERELERLRFRSARYWSILAKL 347          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A5Q4F9C0_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 7.400e-9
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1
Query:  760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 1101
            +G G  W      L+P+    R   H + ++ + +  RD   +++  +  +  R         T+ P++W  + PGLS GR +SVA+ ++V  ER R++F S  YWD+ A ++ +G S
Sbjct:   99 EGEGISWH-IVDELKPKIPVKRMVFHEITEDAIQRALRDFREINMDLVDAQEARRIVDRLAGYTISPLLWKKIGPGLSAGRVQSVAVQLLVNRERERMRFRSGSYWDLKAVLSKSGAS 215          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A7V5M4C3_9BACT (DNA topoisomerase 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M4C3_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 1.080e-8
Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 1
Query:  760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 1083
            +G    W    + L+PQ    R   H + ++ + +  +    + +  +  +  R         TL P++W  +APGLS GR +SVALAM+VE E  RL+F SA+YW ++A +
Sbjct:  306 EGEAISWHLVEL-LQPQVPVRRAVFHEITEDAIQEAFQSFRDIDMNLVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALAMIVERELERLRFRSAQYWSILAQL 416          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A0P7X7W9_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7X7W9_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.310e-8
Identity = 34/117 (29.06%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  760 QGLGFGWRGPAVHLEP----QRKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098
            +G G  W    V L+P    +R   H + ++ + +   +   + +  +  +  R         T+ P++W  +APGLS GR +SVA+ ++V+ ER R++F S  YWD+ A +T +G+
Sbjct:   99 EGEGIAWHILEV-LKPNVPVKRMVFHEITKDAINRALENFRTIDMNLVDAQETRRVVDRLAGYTISPLLWKKIAPGLSAGRVQSVAVELLVQRERERMRFRSGSYWDLRAKLTPSGQ 214          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A2W4J3J0_9PSEU (DNA topoisomerase (Fragment) n=1 Tax=Thermocrispum agreste TaxID=37925 RepID=A0A2W4J3J0_9PSEU)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-8
Identity = 62/216 (28.70%), Postives = 86/216 (39.81%), Query Frame = 1
Query:  559 RVLVIVESPAKARKITELLK---MAASAXXXXXDEAEGSCT-----RVTPWT----------------------TATDT*RTLSARGRTCWPR*GEDQGLGFGWR-----GPAVHLEPQRKEIHHLVQEGLGQVGRDNPA-LHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098
            R LVIVESPAKARKI   L    +  S+     D   G+       +  PW                       T  D    L           G+ +G    W       P V   P R+ + H + E   +    NP  L    +  +  R          + PV+W  + P LS GR +SVA  +VVE ER R++FTSA YWD+ A +++ G+
Sbjct:   14 RRLVIVESPAKARKIASYLGRNYVVESSKGHIRDLPRGAADVPAEYKGQPWARLGVDVDNGFEPLYIVTPDKKATVKDLKGKLKDADELYLATDGDREGEAIAWHLIEALKPKV---PVRRMVFHEITEHAIRDAAQNPRDLDTDLVDAQETRRILDRLYGYEVSPVLWKKIMPKLSAGRVQSVATRIVVERERERMRFTSASYWDIAATMSAEGQ 226          
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: UPI001ACDF18D (Partial DNA topoisomerase 1 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001ACDF18D)

HSP 1 Score: 66.6 bits (161), Expect = 1.770e-8
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  760 QGLGFGWRGPAVHLEPQ---RKEIHH-----LVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVA 1077
            +G   GW    V L+PQ   R+ + H      +QE LGQ    +  L    +R +  R         T+ P++W  VA GLS GR +SVA+ M+V+ ER R+ F SA YWD+ A
Sbjct:   99 EGESIGWHLTEV-LKPQVPIRRMVFHEITREAIQEALGQTREIDQQL----VRAQETRRILDRLVGYTVSPLLWKKVASGLSAGRVQSVAMQMLVKRERERIAFRSATYWDLKA 207          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU2_ECTSI3.300e-1947.86DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
D7G723_ECTSI2.980e-1471.70DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KEK3_9PHAE1.030e-1144.44Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z3T3_9STRA2.060e-1058.18DNA topoisomerase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7J7IIF0_9RHOD7.010e-932.14Toprim domain-containing protein n=1 Tax=Cyanidioc... [more]
A0A5Q4F9C0_9BACT7.400e-928.81DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium... [more]
A0A7V5M4C3_9BACT1.080e-832.14DNA topoisomerase 1 n=2 Tax=cellular organisms Tax... [more]
A0A0P7X7W9_9BACT1.310e-829.06DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacteriu... [more]
A0A2W4J3J0_9PSEU1.400e-828.70DNA topoisomerase (Fragment) n=1 Tax=Thermocrispum... [more]
UPI001ACDF18D1.770e-836.84Partial DNA topoisomerase 1 n=1 Tax=Anaerolineae b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10072contigE-fasciculatus_F_contig10072:78..3722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1103
Cds size567
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.8005917-UTR-E-fasciculatus_F_contig10072:77..2481622927508.8005917-UTR-E-fasciculatus_F_contig10072:77..248Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 78..248 -
1695995570.14817-UTR-E-fasciculatus_F_contig10072:77..2481695995570.14817-UTR-E-fasciculatus_F_contig10072:77..248Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 78..248 -
1622927508.8124545-UTR-E-fasciculatus_F_contig10072:1110..12551622927508.8124545-UTR-E-fasciculatus_F_contig10072:1110..1255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 1111..1255 -
1695995570.1604016-UTR-E-fasciculatus_F_contig10072:1110..12551695995570.1604016-UTR-E-fasciculatus_F_contig10072:1110..1255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 1111..1255 -
1622927508.8586147-UTR-E-fasciculatus_F_contig10072:1608..17431622927508.8586147-UTR-E-fasciculatus_F_contig10072:1608..1743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 1609..1743 -
1695995570.1736946-UTR-E-fasciculatus_F_contig10072:1608..17431695995570.1736946-UTR-E-fasciculatus_F_contig10072:1608..1743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 1609..1743 -
1622927508.8866625-UTR-E-fasciculatus_F_contig10072:1753..18341622927508.8866625-UTR-E-fasciculatus_F_contig10072:1753..1834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 1754..1834 -
1695995570.1887743-UTR-E-fasciculatus_F_contig10072:1753..18341695995570.1887743-UTR-E-fasciculatus_F_contig10072:1753..1834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 1754..1834 -
1622927508.9382162-UTR-E-fasciculatus_F_contig10072:3718..37221622927508.9382162-UTR-E-fasciculatus_F_contig10072:3718..3722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 3719..3722 -
1695995570.2214139-UTR-E-fasciculatus_F_contig10072:3718..37221695995570.2214139-UTR-E-fasciculatus_F_contig10072:3718..3722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10072 3719..3722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.9051719-CDS-E-fasciculatus_F_contig10072:1834..22561622927508.9051719-CDS-E-fasciculatus_F_contig10072:1834..2256Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 1835..2256 -
1695995570.199382-CDS-E-fasciculatus_F_contig10072:1834..22561695995570.199382-CDS-E-fasciculatus_F_contig10072:1834..2256Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 1835..2256 -
1622927508.9205055-CDS-E-fasciculatus_F_contig10072:3573..37181622927508.9205055-CDS-E-fasciculatus_F_contig10072:3573..3718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 3574..3718 -
1695995570.2091699-CDS-E-fasciculatus_F_contig10072:3573..37181695995570.2091699-CDS-E-fasciculatus_F_contig10072:3573..3718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10072 3574..3718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10072.79.1prot_E-fasciculatus_F_contig10072.79.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10072 1835..3718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10072.79.1

>prot_E-fasciculatus_F_contig10072.79.1 ID=prot_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
MVHVAVPQQQCQPTAKVQGWKWIAPGSSMLLSRVGRRSGATAVRWRCTGS
AWAARRRHPDGALTPLSSPSAWWGPLCYRTSTEGYYCLSAGGGGTVLLQP
FIVAASSTTSASGATKVKVAVGAKKSNTTAATAGRTAPPCKSHYHHENAF
DGRKTRPRRSLLPPLPLRRRRASLQPPSGRVRVPRESW*
back to top

mRNA from alignment at E-fasciculatus_F_contig10072:78..3722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10072.79.1 ID=mRNA_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3645bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCATGGTACATGTAGCAGTACCACAACAACAATGCCAACCGACCGCCA AGGTCCAAGGGTGGAAGTGGATTGCGCCGGGCTCTTCGATGCTGCTGTCG CGGGTCGGCAGACGAAGCGGGGCTACGGCGGTGCGGTGGAGATGTACCGG TAAGAGTAGGTGTGCGACATCTAGACTTTGCACCGCAGAACCGCGCCGAC TGCAGTCATCGAACAAGCAGGTGCTGCTGCGCAAGAAGCGGCTGTGTGTT AAACGGACACCACCATCGCTGGTTTTAACCTACTGCTCTACTACGAGGAG CCGTGATAACGTAGAGGCGCAAAGCGCATTTGCGGCAGTGATGTTGTTGT GAACATGTGTGAACATGCACACACATACGTGAGATATCACCCCCCTTTCC GCCCGCCGGCGCTTGCCACCACCTACAATACAGCAGTAGCAGTGACTTTA ACCCTCCCAGTACCCAGTCCCTCCGCGGAAAAAAAAGGTCGTAAAAATGC TCGTCAGCCATTGGTCGAGGAGCTATTGTACAGTCCCTCCAAAGAATCTG AGCTGCTTGCCAGACAACGGGTGACTTGGCTTCAGTATGAAAAGTGTCCA CAAAACACGTGAGGACACTTTTCATACTGCAGCCAATTCAGCACTTTCCA GTTCTCATACGTAGGCGATGTACAGTTTTACGGTTTTACAGCCTTGGGGA CACGCGGCTTGGGAGATGGTGACAGAAAGTCAGAGGCCGAGGAGAGGCAT CACACAGCATCTCCCACAGCGTACCACCTCAGCCAAGCATGATAGACCAA GGGTTCTCACGTGCGTTGCGCACAGCGGTGCCTGGGAAGACTACGGTGTG GTAAATCGGCATTTGAATCATGTGTCCCCAAAGTGTCCCCAAAAGGGCTT CCAGTACTACTGTAGGAGGGTTTGAAACGTCTCAACAGAGCAAGTCACTC GTCGAGCAGCCGTTCAGATACTGGCTGTAAAAGTAAAGACGTAAATGGTG CCGTCGAGATACATGCATAACTTGCACCATGGTGCGGTTTTAGCGCTAAC GGCAACAGCACCGGCAAAAAAACATCATACGACAGCGAGTATTTGAACCA CGTTGAGGTTGGTGACGCTTCGCACAAAATGTGTCTACCGTAGCACTGTA GCCCTGCCGCCTCATGGTGGCAGCACTGCCCGTCGTTCGGCCGTTGCTGT TGTCAAAGATCATTGTTGTGGGTTGTGCGCAGGTAGCAGAACGAAGAGAG AGAAAGAGAGAGAGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTC TTGTAGAACGCCGACAGCTGGCGGGTTTTCTCAACATGATAGTCCGTATT CGCAGATGCTCTGCTTGCTGCATTTCTTTGGAACACGTGTTTTGCACTTC AGTAATGTACGCTTTTGCCCCCGTGCGTGTGACCGTGGTTTTGGCATGTC TCCTGATCGCCCCCAGGTTCGGCGTGGGCGGCCCGACGTCGTCACCCGGA CGGGGCCTTGACGCCACTGTCTTCGCCGTCGGCGTGGTGGGGCCCTCTCT GCTACCGTACAAGTACCGAGGGTTACTACTGCCTGTCGGCAGGCGGTGGC GGTACGGTGCTTTTGCAACCCTTCATAGTGGCCGCGTCGTCCACGACCTC TGCTTCGGGTGCAACAAAGGTCAAGGTTGCCGTTGGCGCCAAGAAGTCGA ACACGACGGCCGCCACTGCCGGCAGAACCGCCCCCCCCTGCAAAAGCCAC TACCACCACGAGAATGCCTTCGACGGCAGAAAAACACGCCCAAGACGAAG CCTGTTGCCTCCGCTGCCGCTGCGAAGAAGAAGAGCAAGCCTGCAGCCGC CAAGTGGAAGGGTTAGAGTTCCAAGAGAGTCCTGGTGATCGTGGAGTCCC CGGCCAAGGCTAGGAAAATCACGGAGCTCCTCAAGATGGCCGCCTCTGCC GGCGGCGGCGGCGGCGACGGCGGAGGCAGAGGCGGAGGGGAGCTGTACAA GGGTTACGCCGTGGACGACTGCAACGGACACGTGACGGACCTTGTCGGCA AGAGGACGGACGTGCTGGCCGAGGTGAGGAGAAGACCAAGGGCTGGGATT TGGTTGGCGTGGACGTGGGGAGCGTTTATCTGTGTTGTTTTATACCCGAA CGCGTGTGTTGGTGATTGGCAAACAGTGGCACGACGCGGTGGTGGTGGTG GTGCGATGAGTACTTGTACAGCCAATGAAGCAGGCCGTGGGCTAAGGTGT TGTTGTTGTAGTTGTGGTCTTCGTTGTCATCACCATTGTTGGCGAGGCCG GGGTGATCGTGGAATAGCTTGTTGTTGTCCATGGCCTCGTGCAGCAGCAG CAGCACAGCAACACTGTACGAGAGCGAACACAACTTGATCGCCCCTCCCC GCCGCCTCGCCGCCCCTTTCCGTTGCGGCACACCACCCCCGCAAATGTTC GGGAAATGTCATTCTAGCCGCTGTGCATCTAGAACCCCAGAGGAAGGAGA TCCATCACCTGGTTCAAGAAGGCCTCGGCCAAGTGGGACGAGATAATCCT GCATTACATGTACCACCGATGAGGACCGAGAGGGGAAGGCCATCAGCTGG CACCTCTTGCAGGTACTACTTGCTGGTTCATTGTTTTCACTTTTCGGGAT TCAGGTATAGCTGTTGTTGATAATTGGCGTTGCGTTGCTGTCAGCCGTGC TGTTGTCGTTGTCGTCGGTGCTGCCGTTGTCGTTGTTGTTTTGGCCATTT GTTCATAATACAGTCCATCGATGCATTATGTTCCTCATCAGCCACCAAGC CTTTGCTGGGCCACTAGTCCACCCTCTCCCTCCATCTTGGTAAGGGTGCG AGTCACAGCAAGAAGTTATGAGATACACCTCTCGTCTCTGGCTGTGCTTC GCTCTTCCTCATTATTTTTTTTATGTTGTTTTGAGCAACCAGGACAGATG GACAAGACCTCGTTCAGGCCCAGTACGCCCGCCGCATCATTTACCGCTTA GCTGGGTCAGAGGGAGGGGAAAAGAGAGAGTCATATCCACAATGGAGTGG CATTCGCCGGGCCAGCGGGGTCTGGGACGTTTTTATGGGGAACCGTGGAA GTCTGGTGGTGTTCCATGGATTTGATCGATGTTGCAGGTTGGGCGAGGGG GGTGGCTGATGCTCCTCCCGCTGTTGCACCTGTTCTTTTGTATCTTGGTA AATGTGCGACACGGTTCTCATTACAATCGCGCCGCCCCCCCATCTGATTT GGCCACAGCAACCGCAAGGATGATGGCCAGCTGCTGGTTCATCCTTGTTT ATTTTTGCCTATAGCCAGGGCCGGTGAAAACCCGGCATGTCGCTCCGTCC TGGCATGCGAAGTATATCGTCCAACGAACTACGGCGTGCGTTCACATGAG TACCCCCCCTTGCCCCGTCGTGCGCAACAATGCGTGTCCCCCTTCCCCGT GCCCGTGCGTGCTGGTTCACACAGCTGCACCCTGATCCCGGTCATCTGGA ACTTCGTCGCTCCCGGGCTTAGCACCGGACGGGCGAAGAGCGTAGCGCTG GCGATGGTGGTCGAGCACGAGCGCGCGCGCCTCAAGTTCACGTCCGCGGA GTACTGGGACATGGTCGCTAACGTTACCTCCGCAGGGAAGTCTGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10072:78..3722-

>mRNA_E-fasciculatus_F_contig10072.79.1 ID=mRNA_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTACATGTAGCAGTACCACAACAACAATGCCAACCGACCGCCAAGGT
CCAAGGGTGGAAGTGGATTGCGCCGGGCTCTTCGATGCTGCTGTCGCGGG
TCGGCAGACGAAGCGGGGCTACGGCGGTGCGGTGGAGATGTACCGATGGT
ACATGTAGCAGTACCACAACAACAATGCCAACCGACCGCCAAGGTCCAAG
GGTGGAAGTGGATTGCGCCGGGCTCTTCGATGCTGCTGTCGCGGGTCGGC
AGACGAAGCGGGGCTACGGCGGTGCGGTGGAGATGTACCGGTTCGGCGTG
GGCGGCCCGACGTCGTCACCCGGACGGGGCCTTGACGCCACTGTCTTCGC
CGTCGGCGTGGTGGGGCCCTCTCTGCTACCGTACAAGTACCGAGGGTTAC
TACTGCCTGTCGGCAGGCGGTGGCGGTACGGTGCTTTTGCAACCCTTCAT
AGTGGCCGCGTCGTCCACGACCTCTGCTTCGGGTGCAACAAAGGTCAAGG
TTGCCGTTGGCGCCAAGAAGTCGAACACGACGGCCGCCACTGCCGGCAGA
ACCGCCCCCCCCTGCAAAAGCCACTACCACCACGAGAATGCCTTCGACGG
CAGAAAAACACGCCCAAGACGAAGCCTGTTGCCTCCGCTGCCGCTGCGAA
GAAGAAGAGCAAGCCTGCAGCCGCCAAGTGGAAGGGTTAGAGTTCCAAGA
GAGTCCTGGTGAGTTCGGCGTGGGCGGCCCGACGTCGTCACCCGGACGGG
GCCTTGACGCCACTGTCTTCGCCGTCGGCGTGGTGGGGCCCTCTCTGCTA
CCGTACAAGTACCGAGGGTTACTACTGCCTGTCGGCAGGCGGTGGCGGTA
CGGTGCTTTTGCAACCCTTCATAGTGGCCGCGTCGTCCACGACCTCTGCT
TCGGGTGCAACAAAGGTCAAGGTTGCCGTTGGCGCCAAGAAGTCGAACAC
GACGGCCGCCACTGCCGGCAGAACCGCCCCCCCCTGCAAAAGCCACTACC
ACCACGAGAATGCCTTCGACGGCAGAAAAACACGCCCAAGACGAAGCCTG
TTGCCTCCGCTGCCGCTGCGAAGAAGAAGAGCAAGCCTGCAGCCGCCAAG
TGGAAGGGTTAGAGTTCCAAGAGAGTCCTGGTGA
back to top