mRNA_E_fasciculatus_S2_contig9471.17504.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9471.17504.1
Unique NamemRNA_E_fasciculatus_S2_contig9471.17504.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Peptidase_M3 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMM4_9PHAE)

HSP 1 Score: 472 bits (1214), Expect = 1.700e-163
Identity = 235/243 (96.71%), Postives = 236/243 (97.12%), Query Frame = 1
Query:  112 ERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVASLLKDTGAVAT 840
            ER GK   D GRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPP ALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHF +DPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVASLLKDTGAVAT
Sbjct:    2 ERFGK---DGGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPAALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFARDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVASLLKDTGAVAT 241          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Mitochondrial (intermediate peptidase (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL4_ECTSI)

HSP 1 Score: 456 bits (1172), Expect = 5.310e-149
Identity = 239/279 (85.66%), Postives = 245/279 (87.81%), Query Frame = 1
Query:    4 HGTLT*LQYQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVASLLKDTGAVAT 840
            H T+    YQLPTVVLVCNFGLPEPPP GGN +QSKERSGK   DDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVS +        +P  +  H V  R  L +  RHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFG QPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHF KDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGV SLLKDTGAVAT
Sbjct:  552 HFTVRCGCYQLPTVVLVCNFGLPEPPPDGGNAKQSKERSGK---DDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSAS--------VPDAV--HRV--RRGLRQQRRHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGRQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFAKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVTSLLKDTGAVAT 815          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Peptidase_M3 (domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=G5AB65_PHYSP)

HSP 1 Score: 245 bits (626), Expect = 1.430e-69
Identity = 123/249 (49.40%), Postives = 161/249 (64.66%), Query Frame = 1
Query:   28 YQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQP-EGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFV--KDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEE 765
            YQ P V LVCNF  P P                   D   L++H+EVETLFHEFGHA+HSLLSRTE QH+SGTR  +DF E PSHL E+F WD  ++++FA HYRTG   P +++ GL  SKT+FA +  QTQ LY+ LD QLFG QP      ++  +   LQ     +P  +G +WH+RFGH  GYGA YY+YLYA++F + IW  +F   K PLN  AGE L+++L++HGGAKDP+++L  +LG E
Sbjct:  463 YQKPIVALVCNFNKPAP-------------------DSPSLLTHAEVETLFHEFGHAMHSLLSRTEFQHLSGTRATLDFVETPSHLFEYFAWDYRVVSEFAHHYRTGAPLPASMMQGLRASKTMFAAMDTQTQCLYSMLDLQLFGEQPLPCSPHTTTQMLHELQNSSTLVPHVDGTYWHTRFGHLIGYGAGYYSYLYARVFAADIWHTNFAGPKGPLNRAAGEKLYQKLMVHGGAKDPNDLLVEMLGRE 692          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Peptidase_M3 (domain-containing protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FFW1_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.180e-69
Identity = 123/246 (50.00%), Postives = 159/246 (64.63%), Query Frame = 1
Query:   28 YQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVW-SSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKD-PLNSDAGELLWKELLIHGGAKDPHEMLRVLLG 759
            YQ P V LVCNF  P P                   D   L++H+EVETLFHEFGHA+HSLLSRTE QH+SGTR  +DF E PSHL E+F WD  ++ +F+ HY+TG   P A++ GL  SKT+FA +  QTQ LY+ LD QLFG QP      ++  +   LQ     +P  +G FWH+RFGH  GYGA YY+YLYA++F + IW   F +  PLN DAGE L+++L++HGGAKDP+E+L  +LG
Sbjct:  354 YQKPIVALVCNFNKPAP-------------------DSPSLLTHAEVETLFHEFGHAMHSLLSRTEFQHLSGTRAALDFVETPSHLFEYFAWDYRVVQEFSSHYKTGHPLPAAMMQGLRSSKTMFAAMDTQTQCLYSILDLQLFGEQPLPCTPPTTTQMLHELQNSSTLVPHVDGTFWHTRFGHLIGYGAGYYSYLYARVFAADIWHSCFGRQGPLNRDAGERLYQKLMVHGGAKDPNELLVDILG 580          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Peptidase_M3 (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1H8_GLOUD)

HSP 1 Score: 243 bits (621), Expect = 5.390e-69
Identity = 123/248 (49.60%), Postives = 159/248 (64.11%), Query Frame = 1
Query:   25 QYQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQP-EGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEE 765
            +YQ P V LVCNF  P P      +  S             L++HSEVETLFHEFGHA+HSLLSRTE QH+SGTR  +DF E PSHL E+F WD   + +FARHY T E  P  ++ GL  SK +FA +  QTQ LY+ LD ++F  QP      ++  +   LQ     +P  +G FWH+RFGH  GYGA YY+YLY++MF S IW   F  +P+N+DAG+ L+KEL+IHGGAKDP+EML  ++G +
Sbjct:  444 KYQKPIVALVCNFSKPAP------YSPS-------------LLTHSEVETLFHEFGHAMHSLLSRTEFQHLSGTRAQLDFVETPSHLFEYFAWDYRFVREFARHYETNEPIPHDMMVGLKMSKNMFAAMDTQTQCLYSLLDLKIFSEQPLPYDPSTTTEILKQLQNVSTLVPHVDGTFWHTRFGHLIGYGAGYYSYLYSRMFASDIWHACFSDNPINADAGDKLYKELMIHGGAKDPNEMLLTMIGRK 672          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJW8_PYTOL)

HSP 1 Score: 243 bits (620), Expect = 1.210e-68
Identity = 121/247 (48.99%), Postives = 155/247 (62.75%), Query Frame = 1
Query:   25 QYQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEE 765
            +YQ P V LVCNF  P P                       L++HSEVETLFHEFGH +HS+LSRTE QH SGTR  +DF E PSHL E+F WD  ++ +FARH+RT E  P  +++ L +SK +F+ +  QTQ LY+ LD  LFGPQ   G  S+      LQ     +P   G +WH+RFGH  GYGA YY+YLY+ +F S IW   F  DPLN +AG+ L++ L+ HGGAKDP+EMLR L+G+E
Sbjct:  473 EYQTPLVALVCNFNKPAPSAP-------------------TLLNHSEVETLFHEFGHVMHSMLSRTEFQHFSGTRTAMDFVETPSHLFEYFAWDYRVVREFARHHRTNEPIPREMMESLRQSKHMFSAMDTQTQCLYSLLDLSLFGPQK--GASSTTETLKQLQNEHTLVPYVPGTYWHTRFGHLVGYGAGYYSYLYSHVFASDIWTSVFQSDPLNKEAGQRLYQNLMAHGGAKDPNEMLRSLIGKE 698          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Mitochondrial (intermediate peptidase, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4N3_PYTIN)

HSP 1 Score: 239 bits (609), Expect = 1.480e-68
Identity = 123/252 (48.81%), Postives = 160/252 (63.49%), Query Frame = 1
Query:   25 QYQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADAL----QERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQ 768
            +YQ P V LVCNF   +P PH  +                 L+SHSEVETLFHEFGHALHSLLSRTE QH+SGTR  +DF E PSHL E+F WD  ++ +FARH+ TGEA P  ++  L +SK +FA +  QTQ LY+ LD QLFG        +S + + AL    Q +   +P  EG  WH+RFGH  GYGA YY+YLY+++F SAIW+  F   PL+  AG+ L  +L+IHGGA+ P E+L  L+G+ +
Sbjct:  296 RYQKPLVALVCNFN--KPAPHAPS-----------------LLSHSEVETLFHEFGHALHSLLSRTEFQHLSGTRASLDFVETPSHLFEYFAWDYRVVREFARHHATGEALPEEMMTRLKQSKHMFAAMDAQTQCLYSLLDLQLFGASANSSSDASTTXSTALLRDLQNKHTLVPHVEGTCWHTRFGHLVGYGAGYYSYLYSRVFASAIWQHRFAAAPLSRSAGQELHDQLMIHGGARAPQEILTALVGQRE 528          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Peptidase_M3 (domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCI0_PHYRM)

HSP 1 Score: 246 bits (629), Expect = 7.150e-68
Identity = 123/249 (49.40%), Postives = 163/249 (65.46%), Query Frame = 1
Query:   28 YQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVW-SSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFV--KDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEE 765
            YQ P V LVCNF  P P                   D   L++H+EVETLFHEFGHA+HSLLSRTE QH+SGTR  +DF E PSHL E+F WD  ++++FA HYRTG   PPA++ GL  SKT+FA +  QTQ LY+ LD QLFG QP   +  ++  +   LQ     +P  +G +WH+RFGH  GYGA YY+YLYA++F + IW  +F+  + PLN  +GE L+++L++HGGAKDP+ +L  +LG E
Sbjct:  881 YQKPIVALVCNFNKPAP-------------------DSPSLLTHAEVETLFHEFGHAMHSLLSRTEFQHLSGTRAALDFVETPSHLFEYFAWDHRVVSEFAHHYRTGAPLPPAMMQGLRASKTMFAAMDTQTQCLYSMLDLQLFGEQPLPCMPPTTTQMLHELQNSSTLVPHVDGTYWHTRFGHLIGYGAGYYSYLYARVFAADIWHTNFIGAQGPLNRKSGEQLYQKLMVHGGAKDPNALLVDMLGRE 1110          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Mitochondrial (intermediate peptidase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEG5_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.560e-67
Identity = 121/246 (49.19%), Postives = 160/246 (65.04%), Query Frame = 1
Query:   28 YQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEE 765
            YQLP V LVCNF   +P             +G        L++H+E+E LFHEFGHALHSLLSRT  QHV+GTR PVDF E PSHL+E+FVWD+ +L +FA H++TG   P  L   L  +K  F+GL  Q Q+LY+ +DQ+LFGPQP     ++++   ++QE++  +P  EGA WH+RFGH TGYGA YY YLY ++F S +          + +AGE LWKE+L+HGG KDP  +LR +LGEE
Sbjct:  500 YQLPVVALVCNFSPCDP-------------AGPV------LLTHAELEALFHEFGHALHSLLSRTRFQHVAGTRAPVDFVETPSHLLEYFVWDQRVLAQFAHHHQTGRPIPAELTAALRAAKREFSGLDTQIQVLYSLVDQKLFGPQPLAEDPTTSAFLASVQEKVMQMPHSEGAVWHARFGHLTGYGAGYYGYLYDRVFASHLXXXXXXXXXXSREAGERLWKEMLVHGGGKDPCHILRDVLGEE 726          
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Match: Zincin-like (metalloproteases family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTE0_KLENI)

HSP 1 Score: 242 bits (617), Expect = 1.970e-67
Identity = 127/255 (49.80%), Postives = 169/255 (66.27%), Query Frame = 1
Query:   28 YQLPTVVLVCNFGLPEPPPHGGNWEQSKERSGKGEQDDGRLMSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFVWDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQQLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASYYAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGE----EQGSGG 780
            +QLP V LVCN     PPP  G                  L+SH EVET+FHEFGHALH+LLSRTE QH+SGTR  +DF E PS+L+E FV D  +L  FARHY TGEA PP ++ GL +SK +F+ + +Q Q++Y+ +DQ  FGPQ  GGV ++A +A  LQE+   +   EG  W +RF H  GYGA YY+YLYAK F+S +W ++F  DPLN +AGE+L +++L +GG++DP  +L+ +LGE    E GSGG
Sbjct:  578 WQLPAVALVCNL----PPPQNGAPS---------------LLSHGEVETMFHEFGHALHTLLSRTEYQHLSGTRGKLDFIETPSNLLELFVDDHRVLRHFARHYSTGEAIPPEVVSGLRQSKRMFSAMDLQVQVVYSLMDQAFFGPQSVGGVDTTAVIAQ-LQEQHTPIGHVEGTCWQARFNHLVGYGAGYYSYLYAKAFSSELWAQYFAADPLNREAGEMLRRDVLQYGGSRDPLRILKHVLGEHSMKETGSGG 812          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9471.17504.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidase_M31.700e-16396.71domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Mitochondrial5.310e-14985.66intermediate peptidase (N-terminal) n=1 Tax=Ectoca... [more]
Peptidase_M31.430e-6949.40domain-containing protein n=20 Tax=Phytophthora Ta... [more]
Peptidase_M33.180e-6950.00domain-containing protein (Fragment) n=1 Tax=Phyto... [more]
Peptidase_M35.390e-6949.60domain-containing protein n=1 Tax=Globisporangium ... [more]
Uncharacterized1.210e-6848.99protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Mitochondrial1.480e-6848.81intermediate peptidase, putative (Fragment) n=1 Ta... [more]
Peptidase_M37.150e-6849.40domain-containing protein n=1 Tax=Phytophthora ram... [more]
Mitochondrial1.560e-6749.19intermediate peptidase n=2 Tax=Nannochloropsis gad... [more]
Zincin-like1.970e-6749.80metalloproteases family protein n=1 Tax=Klebsormid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9471contigE_fasciculatus_S2_contig9471:240..5858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score389.4
Seed ortholog evalue1.1e-105
Seed eggNOG ortholog2880.D7FXL4
Model size1562
KEGG koko:K01410
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0339@1,KOG2090@2759
EC3.4.24.59
Cds size693
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9471.17504.1prot_E_fasciculatus_S2_contig9471.17504.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9471 959..5202 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.3899386-UTR-E_fasciculatus_S2_contig9471:239..9581696842595.3899386-UTR-E_fasciculatus_S2_contig9471:239..958Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9471 240..958 -
1696842595.4641562-UTR-E_fasciculatus_S2_contig9471:5202..52261696842595.4641562-UTR-E_fasciculatus_S2_contig9471:5202..5226Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9471 5203..5226 -
1696842595.4759243-UTR-E_fasciculatus_S2_contig9471:5732..58581696842595.4759243-UTR-E_fasciculatus_S2_contig9471:5732..5858Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9471 5733..5858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.4017916-CDS-E_fasciculatus_S2_contig9471:958..11541696842595.4017916-CDS-E_fasciculatus_S2_contig9471:958..1154Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9471 959..1154 -
1696842595.411363-CDS-E_fasciculatus_S2_contig9471:2005..20861696842595.411363-CDS-E_fasciculatus_S2_contig9471:2005..2086Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9471 2006..2086 -
1696842595.4206064-CDS-E_fasciculatus_S2_contig9471:2753..28511696842595.4206064-CDS-E_fasciculatus_S2_contig9471:2753..2851Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9471 2754..2851 -
1696842595.433716-CDS-E_fasciculatus_S2_contig9471:3308..34441696842595.433716-CDS-E_fasciculatus_S2_contig9471:3308..3444Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9471 3309..3444 -
1696842595.445222-CDS-E_fasciculatus_S2_contig9471:4221..43121696842595.445222-CDS-E_fasciculatus_S2_contig9471:4221..4312Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9471 4222..4312 -
1696842595.4545715-CDS-E_fasciculatus_S2_contig9471:5111..52021696842595.4545715-CDS-E_fasciculatus_S2_contig9471:5111..5202Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9471 5112..5202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9471.17504.1

>prot_E_fasciculatus_S2_contig9471.17504.1 ID=prot_E_fasciculatus_S2_contig9471.17504.1|Name=mRNA_E_fasciculatus_S2_contig9471.17504.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
MSHSEVETLFHEFGHALHSLLSRTELQHVSGTRVPVDFCEIPSHLMEHFV
WDRTMLTKFARHYRTGEAPPPALLDGLHRSKTLFAGLGIQTQLLYATLDQ
QLFGPQPEGGVWSSASVADALQERIAGLPRCEGAFWHSRFGHFTGYGASY
YAYLYAKMFTSAIWERHFVKDPLNSDAGELLWKELLIHGGAKDPHEMLRV
LLGEEQGSGGDAGLRAGVASLLKDTGAVAT*
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mRNA from alignment at E_fasciculatus_S2_contig9471:240..5858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9471.17504.1 ID=mRNA_E_fasciculatus_S2_contig9471.17504.1|Name=mRNA_E_fasciculatus_S2_contig9471.17504.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5619bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9471:240..5858- (Ectocarpus fasciculatus EfasUO2)
CCTCACGGCACTTTGACTTGACTTCAGTATCAACTGCCGACGGTGGTTTT GGTGTGCAACTTTGGCCTGCCGGAGCCGCCGCCCCATGGTGGAAACTGGG AACAGTCCAAGGAACGGTCCGGAAAGGTGAGAGAGGTGGGAGTGGTTGCC CATGGCAGCAGCAGTGCTTGGGAGGAAAGGTACCGTTAATGTTGTTGTTG TTGTTGTTGATGGTGGTTTTGTTGTTATTGGTTGTGGCATCGAAAATGTT GTCGTGGTCGTTGTTTAGTCCCTGTTGCTGTTGTTGTTATTGTTGCTGCT GCTGCTGCTGTCGTTGCTGCTGCCGCCGGTGTGATCGTTCTCTCGGGCGT AGATTTTCGAGCGCCTCTCAGACGTCTCTCTCTGGCTGCTGCTGTTCCGT GTTTCACGTTTCATTGTCGTCATCCATCGGGATAAACGCTGCGCGCGAAA AATTTCCTTCGCCTTAACCTTTTCAACCCGTGCACGAGGTAGGATTGACT TTACTTCCACAGCGACGAGCGATAATTGAAAAATCGAGAGACACTTCATG CCCGTTCTTGTTGGTGTTGTGTGTCGTTGCTTGTTGCTTCTTGGGGGTCT GACTGTTACTTCTCGTGCTTTGTCTTTACGAGGGTGAACAGGATGATGGC AGGCTCATGTCCCACTCGGAGGTGGAGACCCTATTTCACGAGTTCGGGCA CGCGCTGCACTCGCTTCTTTCTCGCACGGAGCTGCAGCACGTCTCGGGTG GGTTTCTTTCTGTGATGCACTGGAGCGGTGGTGTTGCCGTTGCTGCTGTT GATGATGATGATGATGATGATGATGTTGATGTTATCGTTTTGTCGCTGAT GTTGATGACGGTGATCTTGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTTTTGTTGTTGGCTGTTGCTGTTGTTTGTTGCCTTGTT GTTGTTATTGTTGTTGTTGGTGGTGTTTTTGATGTCGTTGCTGTTGTTGT TTTGTTGTTTGTGGTGTTATTTTGTCGTTGTTGTTGTTGTCGTGTCACCG CCGTCGTTGCTGTCGTCGATCTCGTTGCTGTTGCTCCGAGACTAGTCGTC GAGCTCACGACCCGCATTGGCCCTTGCCACGGCTCTGCAAAGAGTGAATG CGGTTGCTGAAGGGTGCAAGTATGCGTAATTGGCGACACTCATTGCCGAC ACACATTCGTCTCTGTGCTTGATGCTGCAGTTATACTGTGGCGGTTTGTT TTTTTTTGCTGGGTGGTGAGTTACAGTAGCTAGTCACGAGAATGACGATG AGTGATTCTGCCACGCGCTTGTTTCGTATAGCCCCCTCCCGGCTTGTCGC TCCGTCCCGGCATTGTAGGTTTCAAGGTCAACGATCTAACGACTACGGCA TGTGTGTGCGCTAAATAGTGCACCCTCTTGCACATATGCCGCGGGGTCTC TTTCGAGCTAGGTCGTCCGCTCTCTTGCGGCGGTGTCTCTCGTTCGTCTG ATCTGATCTGATCTGACCTGACGCCGTTCTCTCGCCTTTCTCTCAGGCAC CCGCGTGCCGGTGGACTTCTGCGAGATCCCGTCCCACCTCATGGAGCACT TCGTCTGGGACAGGACCATGCTCACCAAGTTTGCTAGGTACGCCGGGCCC GCAGGGTTCTTTTTTGTTTTTTGTAGTATACACGTTGTAGAGACCTTTGG AGACAAGTACAGCAGAAGGAACGACGGAGATGAAGTTTTAAGGCAGGCGC TGCGGGGAGACTGGCGAAGAGACAAAAAAGCAGAACCAATCGTGTCTTGA CGTCCTCCTGAATGAACCCCGGTTGGTGAGTCGACAGTTACTTGGAAGGC GTGGCCTAACGCTCAGAATATATGGGACCAAACCACGTACACACAAGCGC ACATACGAGACAGGCGACGAACAATGTGTACGCTGTCCTTCGGCGATATC ACGTGTGCTCTCCATGAAAAATGGGGTAGAGTAGAGTAGTGCCGGCTGGC AGAGGCCGGTGCCGCTTGAGGTATATCACCCGGTGCAGACCGATGACCTT GTTGTCCATCGACGAACAAACAGTTAGGATGATCCTGGACGTTTTCACGT ATCAATGAACACCGTGTGCTTAACTTACCAACTCTCCGTCTCTCCGTCTC TCCGTCTCTCATTTTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCCG TCTCTCTCTCTCTCGCTCTCCCTTTCTCTATTTCTTTCTGTCCATCTCCC CCCTCTCTCTCTCTCCCCCCCCCCGCTCTCTCCCGCATCTGCGTGTCGGT GGCCTTTACCAGTAGCACAACAGCAACAGCAGCAGCCAAACCACCCCTCA TCGACACTACACACTTTGTTTTCGTTTCTCGTGCCCCTGCCGGCCCCTTT CGTCTCCCCAACAGGCACTACCGCACGGGCGAAGCCCCACCCCCCGCCCT GTTAGACGGCCTCCACAGATCGAAAACCCTGTTCGCCGGGTTGGGCATCC AGACACAGCTGCTGTACGCGACCCTCGACCAGCAGCTGTTTGGCCCCCAG GTGCGTGGGTGCTTTCCGTCTGCCTCGGCATGTGTCCTTGCTGCTGCTAC TACACTCCGGGTGCATGACGTTTGCATGCATGGCTTTGACAATTAGTGCG TGGCATCGAACGCTTTGGGAGACAGCCACTGCTTGGATTTTTTACGGCTG GAACCGATTGTTTGAGCCTAGTCGAAGCTTTGGGCGATACGATACGCCTT CGTTTGTCGGTGTTGGTGTTGCTGCACCCGCCACATATCTCCAGCCTCCA TCCACTTTTCTCTTATAACGTGATACCTTTTCGCCGACACACAGCGAATG TTCTCGACCCGGTCGCGTGTGCACCATTTGTCTGGCGTGGATGATAACAA CTAAAGACCACGGACGTGCCGAAAGTGATAAAAATCCTCGCCCCCGCCTG CCTTCATGTTGCTGACTTCCCGGTTGCCACATCGATGTTGGGGTTGACTT TCCGCAGCCGGAGGGGGGTGTTTGGTCGTCGGCATCCGTGGCTGATGCGT TGCAGGAGAGAATTGCCGGATTGCCGCGGTGTGAGGGGGCGTTCTGGCAT TCCAGGTGAGGAGTTGGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTTGTTGTTGT TGTTGTTGCTGTTGTTGTTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGC CTTGGTGAGTCGGACGGAAAAGTAATCGTGCTTTATGAACATGTTGGTGG GGTAAAGAGCTTTCATTCTGGAACGATTACAGCGTATCGGACTGCATAAC TTCAAACGCTGAATGTGCCAAGAGTTGGCTGACGCGCGTTGCCGAAAGGA GATAATGAAAACCATGCACGTGATGCGCCCCTTTGACTCTGCCTTGGTGC TTTCGTGGCTGTTAAAGTGCGATGGGTCATGCAGTTTTAGTTCTTGTCTC TACAGGTACGGACATTGCGTGGCTGATAAAAGTGCGATGGTTGATATTGA TGCGGTTTCGATTATTTGGCTCGAGATACGTTTGAACACGTTGTAGCTGC TAAATGCCACTTTTGGTTTGATGCGGTGTTGATAGTTTGACTCGACAGGT TTTGAACGTTTTGTTTTTAGCTGCTCAATGCCATGGCTTGTTTCATGCGG TGTTGATTATTTGACTCGACAGGTTTGGGCACTTCACCGGATACGGGGCA AGCTACTACGCCTACCTGTACGCCAAGATGTTCACCAGCGCCATCTGGGA ACGGTGAGATTTTGATCAAGTGCCATGTTGTGTGACAGGGTGGCATTGAT ATGGGGATACGTGGATCGTTATTGCGGTACATTGTTGATTAAATGCCATG CTGTGTGACAACTTGGAACGTTTTTTTTTCACGGGGAAATGTTGAGCGGT CCTGCCGTTGGGCTGTAACTGAAGGCTATGTCGCCCTGTTCTGAGAGAAT ACCCGATGCAGTTAAAATGATCGTTCTCATCATGCCGTTTTTGACACGAT TTGCCATCATCGTGAGGTTACAGCCGTTATCCTTCCTAGCGTGAATTTGG CACAAGAGTGTTTTGTTGTTTGGTTCCCTTCTGTGGCATGGCATGACACA AGGCAATCTCGCCCTTATCAAGAACACTAATAAACATTAATATTCCTCTT GGGTAGCGTATCCCGTGTCGTTTGTGTTTTGTGTTTTGTGTTTAGTGTGT GTTTTTTTCTTTGGCTGTGTTGCCCATAGCTTTACCGCACAACAATGACG TGACGTAGGCATGACTGAATTGGCAACGAAAACGCTAAAGTTCGTCTCCG TGTGACACCACCCGAAACGCCACCAAGGTGTATTGCTCCTAGAACCGCGC TACAGGTAGGGCAGACCCCCTCTGAGATGGTGTCGAGGTACGGCCTCGTT TTAACTTGTTCGTTTCGTATTGGCGGCTTCTAAACAAACAGAGTGGCGGT GTCAAATTTATTCTCCTGCAACATACACTACGCTTGTGTAGACCGATGAT CCTATGGCGATTCTCACGAGCACCTCCCTCCGTTTGTTCGTTGTTGTTGT TGTTTTTCGTCCAACCACAACAACAACAACCTCGACAACCACAAAAACGA ACAGACACTTCGTAAAGGACCCTCTCAACAGCGACGCCGGGGAGCTGCTC TGGAAAGAGTTGCTCATCCACGGGGGCGCCAAGGACCCCCACGAGATGCT CCGGGTGTTGCTTGGCGAGGAGCAGGGGAGCGGGGGCGACGCGGGGTTGA GAGCGGGAGTGGCCAGCCTGCTGAAGGACACGGGCGCAGTAGCGACATGA GAGCGCACTGCTACTCCTGCAAGCTAGAATAGTTCTTGGTACGGTGGGGG GTCTGTCTTTGTGCCGATGTCCAATATAGTGGCGGTTCATCGGCTTGAAC ACAGACTGAATCGCCAAGTCATTCTGTACTTCGAGTAGTGCTGGTGTCTG GTATAGCGCCGTTCAGTTATCTGGGCACGTGCCGGCGCTAACACCCCCCC CCACCGTACGAGAGACGGCAGTAGCTGCTCTACAAGCAGAACTATCCAGA GACAGGGAATGCCTCCGATAGAGAGGGAGAGAGAGAGGGGGGGAGTTGCG GAGCCTGCTCGAAAGTGCCCTGGTTTACTTGATGAGATCAGCACTTTGTT GCCGTTTCGCGTGTTGCGTACCATTTGTCATACTGCTGTAGTGGTCAGTT GTCGAGAGCAAGGCGAAGAAGAAAACACACAAGACACTGGAGAGACAGAC CCCGATTCAAGAACAATAGATGATTTCAAGGGGGCGGCTTGAGCGAATGT CACCGCCCACACCTTTTTACAGTCCTAGGAGTTGGTCAAACGTAGGTCCG AGGGGGAAGGAGGTGCTTCCCACGAGAATAGGTTTGGAGCACGCTCTCGA AATCTCAGCCTCCATCCCCATCTTCGACGACAAGAGAAAGTGAGAGGCGG CGGCGGGAACGGAGAGATAAAGCCTCGATAGCGTCTGTGTCTTGGTGGGT CCGGTCATCACCAACTTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9471:240..5858-

>mRNA_E_fasciculatus_S2_contig9471.17504.1 ID=mRNA_E_fasciculatus_S2_contig9471.17504.1|Name=mRNA_E_fasciculatus_S2_contig9471.17504.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9471:240..5858- (Ectocarpus fasciculatus EfasUO2)
ATGTCCCACTCGGAGGTGGAGACCCTATTTCACGAGTTCGGGCACGCGCT
GCACTCGCTTCTTTCTCGCACGGAGCTGCAGCACGTCTCGGGCACCCGCG
TGCCGGTGGACTTCTGCGAGATCCCGTCCCACCTCATGGAGCACTTCGTC
TGGGACAGGACCATGCTCACCAAGTTTGCTAGGCACTACCGCACGGGCGA
AGCCCCACCCCCCGCCCTGTTAGACGGCCTCCACAGATCGAAAACCCTGT
TCGCCGGGTTGGGCATCCAGACACAGCTGCTGTACGCGACCCTCGACCAG
CAGCTGTTTGGCCCCCAGCCGGAGGGGGGTGTTTGGTCGTCGGCATCCGT
GGCTGATGCGTTGCAGGAGAGAATTGCCGGATTGCCGCGGTGTGAGGGGG
CGTTCTGGCATTCCAGGTTTGGGCACTTCACCGGATACGGGGCAAGCTAC
TACGCCTACCTGTACGCCAAGATGTTCACCAGCGCCATCTGGGAACGACA
CTTCGTAAAGGACCCTCTCAACAGCGACGCCGGGGAGCTGCTCTGGAAAG
AGTTGCTCATCCACGGGGGCGCCAAGGACCCCCACGAGATGCTCCGGGTG
TTGCTTGGCGAGGAGCAGGGGAGCGGGGGCGACGCGGGGTTGAGAGCGGG
AGTGGCCAGCCTGCTGAAGGACACGGGCGCAGTAGCGACATGA
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