mRNA_E_fasciculatus_S2_contig945.17482.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig945.17482.1
Unique NamemRNA_E_fasciculatus_S2_contig945.17482.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: MND1 (family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU4_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 2.000e-121
Identity = 191/202 (94.55%), Postives = 195/202 (96.53%), Query Frame = 1
Query:  304 MGKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            M KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVT+NTVK+VNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTA NKRK SELEEGRADTASRREKLGRLQENGLRLQEL+ EYESLKENDPAELEKV RLTQVCKDGVNRWTDNSWCIKS MVKTKGMSGKDVD+YLQIKGDFD V
Sbjct:    1 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTAANKRKFSELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVARLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDRYLQIKGDFDLV 202          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Meiotic (nuclear division protein 1 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=F5BX17_UNDPI)

HSP 1 Score: 285 bits (728), Expect = 2.430e-89
Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 1
Query:  304 MGKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            M K+GLS+EEKR K+L+IYH TK+I+SLKEIEKAASKQGV   T+K+VNQSLVDDGLVDMDKIG SNFFWSFPSK  V +QN++D+L++ IAKAED  A NKRKI+ L E RADT  R+ KL RLQ+N  R+++L+ EYE+LKENDPAELEKVT + +VCKDGVNRWTDN+W IKS MVKT+GMSG DVDKYLQIK DFD V
Sbjct:    1 MVKKGLSLEEKRAKILNIYHGTKSIFSLKEIEKAASKQGVVSQTIKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIAKAEDTAAVNKRKIASLVEERADTEERQLKLRRLQDNKQRVKQLESEYETLKENDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYC3_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.080e-56
Identity = 103/201 (51.24%), Postives = 143/201 (71.14%), Query Frame = 1
Query:  310 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEE-GRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            ++GLS+EEKR ++L IYHS+  +Y+LKEIEK ASK GV + T+K+VNQSL+DD LVD DKIG++NFFWSFPSKV V K+  +++L++ I  ++      + K+++LE  GR D+ +RRE L +L +   R  ELD   + LKENDP EL ++  L +  K+ VNRWTDN W +KS  VK KGM  KDVD+Y+Q+  DFD +
Sbjct:    5 RKGLSLEEKRQRILGIYHSSGEVYNLKEIEKIASKAGVVLQTIKDVNQSLIDDHLVDADKIGSANFFWSFPSKVYVVKKTKIESLQKQIEDSKRQLNAAQDKVADLENAGRQDSNTRREGLAKLDQERKRGSELDERLQCLKENDPEELLRLKNLQEEIKEHVNRWTDNIWAVKSWCVKKKGMPSKDVDRYMQLPQDFDYI 205          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Uncharacterized (protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3HEE5_PHYRM)

HSP 1 Score: 181 bits (459), Expect = 9.050e-50
Identity = 93/202 (46.04%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  304 MGKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            M ++G+S++EKR+++L IYH +K +++LKE+EK  SK GV + TVK+VNQ+LVDD LVD DKIG+ N+FWSFPSK++ T++  +  LEQ    A+D     K+ + + +  R ++  R +KL RL+E   ++Q L  + + L ENDP  LE++ R  ++ K+G +RWTDN + +KS +VK +G+ GK+VDK+L IK DFD V
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDVLVDCDKIGSGNYFWSFPSKLSQTRRRKLSELEQRHQTAQDKLVKVKQNVEKQKGLRPESEERVQKLRRLEEQKAKVQVLRTKVQHLAENDPEILEQLERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYV 202          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Protein (involved in meiotic recombination/predicted coiled-coil protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFA8_PLAHL)

HSP 1 Score: 177 bits (448), Expect = 3.450e-48
Identity = 91/202 (45.05%), Postives = 141/202 (69.80%), Query Frame = 1
Query:  304 MGKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            M ++G+S++EKR+++L IYH +K +++LKE+EK  SK GV + TVK+VNQ+LVDD LVD DKIG+ N+FWSFPSK++ +++  +  LEQ     ++     K KI E +  R+D+  R +KL RL+E  ++++ L    + L ENDPA LE +     + K+G +RWTDN + +KS +VK +G+ GK+V+K+L+I+ DFD V
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQCRQARQEKLDRVKEKIEEQQALRSDSDERIQKLKRLEELKVKVESLRNTMQHLAENDPAILEDLECKVGIAKEGADRWTDNVFTLKSWVVKKRGVEGKEVNKWLEIQDDFDYV 202          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Meiotic (nuclear division protein 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRE1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.560e-48
Identity = 95/201 (47.26%), Postives = 135/201 (67.16%), Query Frame = 1
Query:  310 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDME-YESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            ++G+S+EEKR  +L IYHST A+YSLKE+E  ASKQGV   +VK+VNQ LVDDGLV+M+K+GASN F++FP K   +K+    NLE  +A+ + + +T + K + L  GR D+  RR+ +    E  L L+   +E  +  K+NDP ++E++     +CK GVNRWTDN + IKS +VK +GM  KDVDK+L +   FD V
Sbjct:    4 RKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDY-ETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYV 203          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC7_HETAK)

HSP 1 Score: 175 bits (444), Expect = 5.750e-48
Identity = 94/200 (47.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query:  310 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            ++G+S EEKR ++L IYH  K + +LKE+EK   KQGV V ++KEVNQ+LVDD LVD DKIG++NFFWSFPSKVA                              L  GR DT  RR +L +LQ+   R   LD   ++LKENDP EL ++   T+ CK+  NRWTDN W +KS  +K KGM+  +VD+YLQ+  DFD V
Sbjct:    5 RKGVSYEEKRTRILGIYHEKKEVLNLKELEKLGVKQGVVVQSIKEVNQALVDDNLVDTDKIGSANFFWSFPSKVAEL----------------------------LGAGRHDTPQRRAQLQKLQDEKAREAALDQRLDTLKENDPRELARIETETEKCKEAANRWTDNIWALKSWCIKKKGMASTEVDRYLQLSSDFDYV 176          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7I4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.660e-47
Identity = 99/205 (48.29%), Postives = 137/205 (66.83%), Query Frame = 1
Query:  301 TMGKR-GLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDME-YESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            TM KR G+S+EEKR  +L IYHST A+YSLKE+E  ASKQGV   +VK+VNQ LVDDGLV+M+K+GASN F++FP K   +K+    NLE  +A+ + + +T + K + L  GR D+  RR+ +    E  L L+   +E  +  K+NDP ++E++     +CK GVNRWTDN + IKS +VK +GM  KDVDK+L +   FD V
Sbjct:   86 TMPKRKGMSLEEKRQTILKIYHSTGAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSTGRQDSEKRRQNMEDY-ETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYV 289          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0R0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.590e-45
Identity = 90/203 (44.33%), Postives = 136/203 (67.00%), Query Frame = 1
Query:  304 MGKR-GLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            M KR G+S+EEKR ++L IYH +K +++LKE+EK  +K GV + T+K+VNQ+LVDDGLVD DKIG+ N+FWSFPSK++  ++  +  LEQ  A A+D  A  ++ I E +  R ++  R  KL RL E    +++L  + + L +NDP  L ++ R  QV K G +RWTDN + ++S + + +G +  +VDK+L IK DFD +
Sbjct:    1 MSKRKGVSLEEKRARILHIYHDSKDVFNLKEVEKIGAKAGVVLQTIKDVNQALVDDGLVDCDKIGSGNYFWSFPSKLSQARKRKLGELEQRKAAAQDKLAKVRQSIDEQKSKRTESDDRAAKLQRLAELQASVKDLKAKVQHLADNDPEILAQLERSVQVAKIGADRWTDNVFTMRSWVAQKRGCASSEVDKWLGIKDDFDYI 203          
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH2_PYTOL)

HSP 1 Score: 168 bits (426), Expect = 5.160e-45
Identity = 87/200 (43.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query:  310 KRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTATNKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAELEKVTRLTQVCKDGVNRWTDNSWCIKSXMVKTKGMSGKDVDKYLQIKGDFDQV 909
            K+G+S+EEKR+++L IYH +K +Y++KEIEK  +K GV + T+K+VNQ+LVDD LVD DKIG+ N+FWSFPSKV+  ++  +  LEQ      +  +  K+++ + +  R D+  R  KL RL E    ++++  + + L +NDPA LE + R  QV K G +RWTDN + ++S + + +G S  +VDK+L IK DFD +
Sbjct:    5 KKGVSLEEKRERILKIYHESKDVYNIKEIEKLGAKAGVVLQTIKDVNQALVDDALVDFDKIGSGNYFWSFPSKVSQQRKRKLSELEQRKQSTSEQLSKVKQEVEKQKSLRTDSDDRVAKLQRLAELQTHVKDMKAKIQHLADNDPAILEHLERNMQVAKVGADRWTDNVYTVRSWVAQKRGCSTGEVDKWLGIKDDFDYI 204          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig945.17482.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MND12.000e-12194.55family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU4_... [more]
Meiotic2.430e-8971.78nuclear division protein 1 n=1 Tax=Undaria pinnati... [more]
Hypothetical3.080e-5651.24protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized9.050e-5046.04protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3H... [more]
Protein3.450e-4845.05involved in meiotic recombination/predicted coiled... [more]
Meiotic3.560e-4847.26nuclear division protein 1 n=2 Tax=Nannochloropsis... [more]
Hypothetical5.750e-4847.00protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.660e-4748.29protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Uncharacterized2.590e-4544.33protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized5.160e-4543.50protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig945contigE_fasciculatus_S2_contig945:480..5089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score369.8
Seed ortholog evalue8.3e-100
Seed eggNOG ortholog2880.D8LRU4
Preferred nameMND1
Model size1886
KEGG koko:K11997,ko:K22381
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009553,GO:0009555,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048229,GO:0048285,GO:0048856,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons7
EggNOG free text desc.homologous recombination
EggNOG OGsCOG5124@1,KOG3433@2759
Ec32 ortholog descriptionMND1 family
Ec32 orthologEc-08_002470.1
EC2.3.2.27
Cds size609
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig945.17482.1prot_E_fasciculatus_S2_contig945.17482.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig945 1454..3746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.1970906-UTR-E_fasciculatus_S2_contig945:479..14531696842593.1970906-UTR-E_fasciculatus_S2_contig945:479..1453Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig945 480..1453 -
1696842593.2677495-UTR-E_fasciculatus_S2_contig945:3746..37701696842593.2677495-UTR-E_fasciculatus_S2_contig945:3746..3770Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig945 3747..3770 -
1696842593.2784977-UTR-E_fasciculatus_S2_contig945:4772..48931696842593.2784977-UTR-E_fasciculatus_S2_contig945:4772..4893Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig945 4773..4893 -
1696842593.2892747-UTR-E_fasciculatus_S2_contig945:4931..50891696842593.2892747-UTR-E_fasciculatus_S2_contig945:4931..5089Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig945 4932..5089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.2142072-CDS-E_fasciculatus_S2_contig945:1453..15881696842593.2142072-CDS-E_fasciculatus_S2_contig945:1453..1588Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 1454..1588 -
1696842593.2252648-CDS-E_fasciculatus_S2_contig945:2214..22961696842593.2252648-CDS-E_fasciculatus_S2_contig945:2214..2296Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 2215..2296 -
1696842593.2359953-CDS-E_fasciculatus_S2_contig945:2649..27621696842593.2359953-CDS-E_fasciculatus_S2_contig945:2649..2762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 2650..2762 -
1696842593.2468119-CDS-E_fasciculatus_S2_contig945:3114..32551696842593.2468119-CDS-E_fasciculatus_S2_contig945:3114..3255Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 3115..3255 -
1696842593.257242-CDS-E_fasciculatus_S2_contig945:3608..37461696842593.257242-CDS-E_fasciculatus_S2_contig945:3608..3746Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 3609..3746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig945.17482.1

>prot_E_fasciculatus_S2_contig945.17482.1 ID=prot_E_fasciculatus_S2_contig945.17482.1|Name=mRNA_E_fasciculatus_S2_contig945.17482.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=203bp
MGKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTVNTVKEVNQ
SLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIAKAEDNTAT
NKRKISELEEGRADTASRREKLGRLQENGLRLQELDMEYESLKENDPAEL
EKVTRLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDKYLQIKGDFD
QV*
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mRNA from alignment at E_fasciculatus_S2_contig945:480..5089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig945.17482.1 ID=mRNA_E_fasciculatus_S2_contig945.17482.1|Name=mRNA_E_fasciculatus_S2_contig945.17482.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4610bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig945:480..5089- (Ectocarpus fasciculatus EfasUO2)
GCACTGCTCACTTGCAGCCAAGTGCAATACCATCGACTACACCATTGACA CTCGCAAAACCATCGACTGCAGCAGTACTACAGCACGCACGATCACCCAG AGATACTCTCTGTTTGGTATCGGTGGATACGTGGATACGGAAGCAGCAGC TGGATCAGCGCAAAGAGCGGGCCGCAGTCTACTGCTGTATCGTGCGACCT GTCTCTCTTGGCCTCCTACAGCAGTAGGTGGTCGGTGCTTTCTCTCTCTG CCTCCTCTTCCTCTGTCTGCACTTCCATCGCATATACCGGCGGAGTTGAA TCACATATCGGGAAAAGGTGGGCTTGTGTTTACTTCTGGATGAAAGAAAA TATTGAGATTGTATCAACGCAGCAGTAGGACAATGGTACAGCAGTCAGTA TCTACCTCGAAGCAGCAAAACTGCTGTCTGGATAGATCAACTGCTGTCAT GACAGAAGCGCAGCCGAACAGACGCCGTGGTAGAGAGAGCACCATCTCAT GTCACCACCAAACAACCTCTAGACACGCCAGGCGGCGTACTCAGCGACTT TTTAAGGGGGATTCACCGCGTTTGAAGAAGAGTATATTGGCGGTGTCAAA AATTCAAATTCAATTCAAATTTCAAATTGACGACTGCTGTGGCTTCTTTC TCGAACGGGTAGAGTCTTTCGGTGTTTGTACTTGTACTTTTTCTTTAAAA AAAAAACGCTCGTCTCTACTTCCCACTAGATGTATGTATGCATTCAGCGT AGTACTGCTGTAGCTTCATAGCAGCAGTAGTAGCAGTGCTTCACGGCAGT ACATGTATTTTACTACTGATGAAGGGAACATGTTTTCAGCGAAAACCAAC GAACGTAATTCTGCTTGTTCGTCACCTCGCCCCCACAACACTACACACGG CCCATCGACTTTACTTCAATCGCTACACGCATTGACGACTCCAGCTCACA ATAATACAATTTTACCACTTCTTGATGGTGGTACATGCTCCTATATGACC CCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGATGGGGGCCAGAGGGGC AGACGACAGAGTCCAATGATGGTTGAAAAATAATAAAAAATGTGCATAAC ATTTTCGGAGGCAGAGGGGTAGACTATGCAACATTCAGCATTGTTTTCCA AGCACTCGAATGTTTGCAGTTTATTTATCGGTACGTTGGATCTGTGGACC TGCTTCCACGCTGGTTTGATGTTTTTATGCTATGTCTCCGCAATTTAGAA TATTTTCTCAACGCTTACAATCTCTCTCGGGTGTTTTTTTGTTTGCCCCG AACGTTGAACCGAGACCAGGATTGCACACTTTTGGACAGGACAATGGGAA AGAGGGGGCTCTCTGTGGAGGAGAAACGGGACAAGGTACTCGACATTTAC CACTCGACCAAGGCCATCTACAGCCTAAAGGAAATCGAGAAAGCAGCATC GAAGCAAGGGGTGACGGTCAACACAGTCAAGGTACGTATGTCAAAGCAGC GGTGCAGCAGTATCGGAAACAGCAGTAGGTCACCGATGACGACGACCTCG ACATCGAAGCACTGCGACAAATCGTTGCAGCTCACCAAATGTCACGCACA TCGCAGTAGCACCCAATGTCACACTCAAGGTGGAGATTTCCCGCAGGCAT CCCCACGTGCGTGTGTGACTCCGAGACCTTTGCGGAAATCGCATGGGACC GTATTTATCCCTGCGTTGTTGCCTCGCCCTTGTCCGATGACTCCGAACTA TCCGATAACGCGCAATCTTGTCGATGGAACGACTCACGCGTTCAATCGTC TTTGCTGTCCTTCTCCCAACATTACCCGCCACAGGAAGTGAACCAATCTC TAGTCGACGATGGCCTCGTGGATATGGACAAGATCGGCGCTTCGAACTTC TTTTGGTCCTTTCCTTCCAAAGTGGCGGTCACCAAACAAAATGTAGTCGA CAACCTTGAGCAAAGCATCGCCAAGGTATGTACCGAGGTGGCCGCTCCTG GCCGGATGCAACATTATGCTCTACGAGGTTCTTGCGCATACTATGCACCC CTTTGGGAGACTTTTGGGCGGCAAGGAATACGCTACGTGCATCTACGTAG TCCATAATGGTTGCATGAGTCCTCCGGTATGCTCGTGTACACCACGGTCC GTTGCACCCTTACGTGCAATTGGCAGGTTGGTGGTCTGTCGTCGATGCTA GCCATCTGTTGTGTGGTTAATTATTTTAGCGATGCGCAGAGGGGGCAGAA CCTGGTTGGAATCATCAATGGCACACCACACCCTTCTTTGCGCTTCGCTA CAATACACTCCCATGCTTTTGTGTAAGGCCGAAGACAACACAGCAACCAA CAAGCGAAAGATTTCGGAGCTTGAAGAAGGTCGTGCGGACACAGCAAGCC GAAGAGAGAAGCTTGGACGCTTGCAGGAGAACGGCCTGCGGTGAGGTTGG CAAGCAGTACCCCCGCAACTGCACAATCAACTCGCTGTGTGCAGGTTAGG GCCGCTTGATTGTTAGTTTGTTTACCTCCTAGTACCACAGCCGGTTGTGC TGTCAGAGACCATTGATTGGCGTGTACCTGGTACGTCGTCCCCCCAGTGT CTGATATTTCTGTAGGCATCCATCTCTATGCTTGTGTCTCTGCAAGTGGT TCAATTAGTATTTCGTGTGTACCCGCCTGGGCAGTTCCGAGCAAGTGTGT ACCAACCAACTTGATAATTTCTGCCGATGCTGCCGCTCTTCGGATGTTTC AATCTTAATCTTGCCGCTCTCCGCATGTTTGTTTTTGGTACAGATTGCAG GAGCTGGATATGGAGTATGAATCACTCAAGGAGAATGACCCTGCAGAACT GGAGAAGGTCACCCGTCTGACACAGGTGAGCACTTGCATTGAATCGGGTT CACCGGACATAAATTGCGCCGCGCGGTACCATATGACGTTTTGGCATGGT ACTTGTATTCAGAGCTTTCCCGGAACCAACGCTCTCTTCGTCAGGAAATA CTCGCTGTCGGTGCCCCCCTCTCCTCGATGTCGAATTTTACCCTGGCTCA AGTTTATTTGTCCTCCGGGTGGCACACGCAGAGTCTGTTGCGACGAAACT TTGGAACTGTGCATTGACGTTAGCATTGAGAAGGAGCAGGTGGGGGCACT GGCTGGAGATCACATCTGGTTTTGTAAACAGAAACTTCTATTGATAAAAC TATCCGACGCGACCACCACCATGACAAACTCCGCGTAATTCAGCACTTTT TTCTCGGTGAACGACAACACTCAAACCCGAATACTCCGCCGGATCATGTG TTACCCGAGCGCGCGCTTGTGGTTACACCTTCCCTTCGCTAACACGGCGT TTCTTGACTATCCTCGAGTTCGAAGCCCTGCGTCCGTGACAACACTCGTG TGCGCTCCAAGTTTGTGCTTTCACCCATCCACTCATGCACCCATGCACCG TTTGAGAGTCGTGCGCCACTTAAAATATGTTGCCCGAATCATCGTGGGTA GGTATGCAAGGACGGCGTGAATCGGTGGACAGACAATTCGTGGTGCATCA AGAGCTGGATGGTGAAGACAAAAGGAATGAGTGGGAAGGACGTGGACAAA TATCTGCAAATCAAAGGAGATTTTGACCAAGTTTGAGTTTTTCGATTGTA CCCCGTCGGGCGAACCAGATACTGTTGGGCCCCTGGGTTTGTGTCTCGTC CGGCGTATGCATCCGTCCGTGGTGGGAGCTTGACCAAGGGTGCGCGAGCC AGCTTCATGTACAGCAGAGAAGAGGTGGCGCCGGCGAGGCTCTTGGTAGA TTCGTCATGGCTCTCCCTACCGCTCCCCGTTTCAGTGTGCTCCCGCCTGT AGCGCTAGTAGCAGTCAGCGAAAGCAAGCACATGTGATTGGAGTAGGAGT AAAGAATATGTACAGAAAGTGACCTTTGTGAGCTCACACCTATACATTGA AAATAGAAATAGGGTGTCCGAACACCTCCGTTAGTCCAAGAACGAACACT TTTGCTTTGTGATATGGCCATTGCTTCTGTATGCAAAAGTTATTGAAGCC CAAATCAAACCATTGGACTATTCAGCGACTGGTTGTGGTCTGTACAGAAT TTCGTCGTGGAGTTCGAGACCTTGACACTTGAGGTGGCTTTTTTCGTGAG ACCCTGGATACACTCAGCGACGGTGTGGGTGACGGAAAGACTCGTCTGCT CGTCTGAGACCCTCTGGAACATTCCGCAGGATGTGGGTGACGAGTGATGA AGCGAATTGACTAGATTGGATGAATATGGCAGCGCTGGCGAGGGGAGTCT CCTCGGAAGTGAAAGTGGGGCATTCGATCCCCACGACTAACTTGTTGCAA ACCAATCAACAGTTTAGTCTATTATTAATTGTCTAGTTCAGCGCTGTCTA GATGGTTTGATTTCGTCTTCCAAAACTTATGTGTATGTGTATGTGTTGTG CCAGTGCGTGTTTTCGTCGCATCTACTGTGTCTGGACGCCAGTCTCTACC TTTCGGTGTGTATGTTTGATGCACCAGCCCTCACTTCTACTCGGAGTATT TTTGTTTGGTCTCACGTCGGTCGGTGCTTGCCTTCAAGTTTTCACGTGAC AAGAATTCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig945:480..5089-

>mRNA_E_fasciculatus_S2_contig945.17482.1 ID=mRNA_E_fasciculatus_S2_contig945.17482.1|Name=mRNA_E_fasciculatus_S2_contig945.17482.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=609bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig945:480..5089- (Ectocarpus fasciculatus EfasUO2)
ATGGGAAAGAGGGGGCTCTCTGTGGAGGAGAAACGGGACAAGGTACTCGA
CATTTACCACTCGACCAAGGCCATCTACAGCCTAAAGGAAATCGAGAAAG
CAGCATCGAAGCAAGGGGTGACGGTCAACACAGTCAAGGAAGTGAACCAA
TCTCTAGTCGACGATGGCCTCGTGGATATGGACAAGATCGGCGCTTCGAA
CTTCTTTTGGTCCTTTCCTTCCAAAGTGGCGGTCACCAAACAAAATGTAG
TCGACAACCTTGAGCAAAGCATCGCCAAGGCCGAAGACAACACAGCAACC
AACAAGCGAAAGATTTCGGAGCTTGAAGAAGGTCGTGCGGACACAGCAAG
CCGAAGAGAGAAGCTTGGACGCTTGCAGGAGAACGGCCTGCGATTGCAGG
AGCTGGATATGGAGTATGAATCACTCAAGGAGAATGACCCTGCAGAACTG
GAGAAGGTCACCCGTCTGACACAGGTATGCAAGGACGGCGTGAATCGGTG
GACAGACAATTCGTGGTGCATCAAGAGCTGGATGGTGAAGACAAAAGGAA
TGAGTGGGAAGGACGTGGACAAATATCTGCAAATCAAAGGAGATTTTGAC
CAAGTTTGA
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