mRNA_E_fasciculatus_S2_contig9412.17460.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9412.17460.1
Unique NamemRNA_E_fasciculatus_S2_contig9412.17460.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: FA_desaturase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG61_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.000e-75
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNHPGRAWRHGPP 413
            VNYVEHYGLERKRD+QGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNHPGRAWRHGPP
Sbjct:  335 VNYVEHYGLERKRDEQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNHPGRAWRHGPP 446          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Fatty (acid desaturase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE88_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.140e-37
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNHPGRAWRHGP 410
            VNY+EHYGLER+    GK E VG EHSWD+P RL+NM LFKLQRH DHH+ + +RYQ L A+   +PQLP GYPG ILLA  PP W  VMD R+  LR++ HPGR WR GP
Sbjct:  556 VNYLEHYGLERREVSPGKYESVGVEHSWDSPFRLSNMCLFKLQRHADHHIAAGKRYQLLLAQKD-APQLPCGYPGSILLAFVPPAWFRVMDPRIHALRAR-HPGRVWRFGP 664          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane (monooxygenase n=1 Tax=Legionella steigerwaltii TaxID=460 RepID=A0A378L8H5_9GAMM)

HSP 1 Score: 132 bits (332), Expect = 1.730e-34
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 380
            +NY+EHYGLERK+   G  E V  +HSW+A H L+NM+LF+LQRH DHHV+  R YQ LR   S SPQLP GY G ++LALFPPLWR VMDKRVL  RSKN
Sbjct:  250 INYIEHYGLERKKLANGSYEKVSAQHSWNASHWLSNMILFQLQRHSDHHVHGARPYQLLRHIDS-SPQLPSGYLGMLILALFPPLWRKVMDKRVLIYRSKN 349          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane (1-monooxygenase 2 n=3 Tax=Legionellaceae TaxID=444 RepID=A0A377GK50_9GAMM)

HSP 1 Score: 131 bits (329), Expect = 4.710e-34
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 380
            +NY+EHYGLERK+   G  E V  +HSW+A H L+NM+LF LQRH DHHV+  R YQ LR     SPQLP GY G I+LALFPPLWR VMDKRVL  RSKN
Sbjct:  250 INYIEHYGLERKKLANGAYEKVSIQHSWNASHWLSNMLLFHLQRHSDHHVHGARPYQLLR-HIDTSPQLPSGYLGMIILALFPPLWRRVMDKRVLAHRSKN 349          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane (monooxygenase n=1 Tax=Legionella cherrii TaxID=28084 RepID=A0A0W0S8S6_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 6.750e-34
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 380
            +NY+EHYGLERK+   G  E V  +HSW+A H L+NM+LF LQRH DHHV+  R YQ LR   S SPQLP GY G ++LALFPPLWR VMDKRVL  RSKN
Sbjct:  250 INYIEHYGLERKKLANGSYEKVSAQHSWNASHWLSNMLLFHLQRHSDHHVHGARPYQLLRHIDS-SPQLPSGYLGMLILALFPPLWRGVMDKRVLISRSKN 349          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane (1-monooxygenase n=1 Tax=Legionella sp. PC997 TaxID=2755562 RepID=A0A7G4RHJ9_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 2.720e-33
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 380
            +NYVEHYGLERK+   G  E V  +HSW+A H L+NM+LF LQRH DHHV+  R YQ LR     SPQLP GY G I+LALFPPLWR VMDKRVL  R+ N
Sbjct:  250 INYVEHYGLERKKFADGSYEKVSIQHSWNASHWLSNMLLFHLQRHSDHHVHGARPYQLLR-HLDASPQLPSGYLGMIILALFPPLWRKVMDKRVLAHRASN 349          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4D6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.890e-32
Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNHPGRAWRHGP 410
            VNY+EHYGLER+    G+ E V  +HSWD   R+TN V+FKL+RH DHH ++ +RYQTL+A  S SPQLP GY   ILLA FPPLW  VM  R+L  R +   G+ +RHGP
Sbjct:    4 VNYLEHYGLERRELKPGQYEQVQPQHSWDTACRVTNHVMFKLERHADHHAHAGKRYQTLQAYDS-SPQLPAGYATMILLAFFPPLWHMVMHPRLLAHR-RQQVGQVFRHGP 112          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane-1-monooxygenase (n=2 Tax=Legionella TaxID=445 RepID=A0A378JNT5_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 3.140e-32
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNH 383
            VNY+EHYGLER++   G+ E V F+HSW+A H L+N++LF+LQRH DHH+N  + YQ L+     SPQLP GY G I LAL PPLW  VMDKRVL  RSK++
Sbjct:  250 VNYIEHYGLERQKLANGQYEKVSFQHSWNANHWLSNVILFQLQRHADHHLNGAKPYQVLK-HIDESPQLPTGYLGMIFLALIPPLWHKVMDKRVLDYRSKHN 350          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane (monooxygenase n=6 Tax=Legionella TaxID=445 RepID=A0A0W0ZV20_9GAMM)

HSP 1 Score: 125 bits (314), Expect = 7.760e-32
Identity = 62/101 (61.39%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   78 VNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKN 380
            +NY+EHYGLERK+   G  E V  +HSW+A H L+NM+LF+LQRH DHHV+  R YQ LR   S SPQLP GY G I+LAL PPLWR +MDKRVL  R+ N
Sbjct:  250 INYIEHYGLERKKLTNGSYEKVSEQHSWNASHWLSNMLLFQLQRHSDHHVHGARPYQLLRHIDS-SPQLPSGYLGMIILALCPPLWRRIMDKRVLAKRALN 349          
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Match: Alkane (1-monooxygenase n=1 Tax=Oleiagrimonas soli TaxID=1543381 RepID=A0A099CVF7_9GAMM)

HSP 1 Score: 125 bits (314), Expect = 9.630e-32
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   57 STSTVTKVNYVEHYGLERKRDDQGKTEPVGFEHSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPGCILLALFPPLWRAVMDKRVLKLRSKNHPG 389
            + +T+  +NYVEHYGL R RD QG+ E V   HSW+A  RLTN +LF+LQRH DHH ++ RRYQ LR   + SPQLP GY G  +LAL PPLWR +MD+RV    ++N  G
Sbjct:  250 AAATLEVINYVEHYGLRRARDAQGRYERVTHLHSWNASQRLTNWLLFQLQRHSDHHAHARRRYQVLRHH-ADSPQLPTGYAGMFVLALVPPLWRRLMDERVRHFNARNDLG 359          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9412.17460.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FA_desaturase1.000e-7599.11domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Fatty6.140e-3762.16acid desaturase-domain-containing protein n=1 Tax=... [more]
Alkane1.730e-3464.36monooxygenase n=1 Tax=Legionella steigerwaltii Tax... [more]
Alkane4.710e-3464.361-monooxygenase 2 n=3 Tax=Legionellaceae TaxID=444... [more]
Alkane6.750e-3464.36monooxygenase n=1 Tax=Legionella cherrii TaxID=280... [more]
Alkane2.720e-3363.371-monooxygenase n=1 Tax=Legionella sp. PC997 TaxID... [more]
Hypothetical2.890e-3255.86protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Alkane-1-monooxygenase3.140e-3258.82n=2 Tax=Legionella TaxID=445 RepID=A0A378JNT5_9GAM... [more]
Alkane7.760e-3261.39monooxygenase n=6 Tax=Legionella TaxID=445 RepID=A... [more]
Alkane9.630e-3254.951-monooxygenase n=1 Tax=Oleiagrimonas soli TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9412contigE_fasciculatus_S2_contig9412:748..2399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score244.2
Seed ortholog evalue3.6e-62
Seed eggNOG ortholog2880.D7FNV7
Model size464
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Fatty acid desaturase
EggNOG OGs2CXPI@1,2RYW0@2759
Cds size417
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.9141178-UTR-E_fasciculatus_S2_contig9412:747..7491696842590.9141178-UTR-E_fasciculatus_S2_contig9412:747..749Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9412 748..749 +
1696842590.9570215-UTR-E_fasciculatus_S2_contig9412:2354..23991696842590.9570215-UTR-E_fasciculatus_S2_contig9412:2354..2399Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9412 2355..2399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.9274907-CDS-E_fasciculatus_S2_contig9412:749..8481696842590.9274907-CDS-E_fasciculatus_S2_contig9412:749..848Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9412 750..848 +
1696842590.9375486-CDS-E_fasciculatus_S2_contig9412:1306..14861696842590.9375486-CDS-E_fasciculatus_S2_contig9412:1306..1486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9412 1307..1486 +
1696842590.947329-CDS-E_fasciculatus_S2_contig9412:2216..23541696842590.947329-CDS-E_fasciculatus_S2_contig9412:2216..2354Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9412 2217..2354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9412.17460.1prot_E_fasciculatus_S2_contig9412.17460.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9412 750..2354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9412.17460.1

>prot_E_fasciculatus_S2_contig9412.17460.1 ID=prot_E_fasciculatus_S2_contig9412.17460.1|Name=mRNA_E_fasciculatus_S2_contig9412.17460.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
MAHAMTWDRACSRACRPPSTSTVTKVNYVEHYGLERKRDDQGKTEPVGFE
HSWDAPHRLTNMVLFKLQRHGDHHVNSTRRYQTLRAEPSRSPQLPLGYPG
CILLALFPPLWRAVMDKRVLKLRSKNHPGRAWRHGPPS*
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mRNA from alignment at E_fasciculatus_S2_contig9412:748..2399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9412.17460.1 ID=mRNA_E_fasciculatus_S2_contig9412.17460.1|Name=mRNA_E_fasciculatus_S2_contig9412.17460.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1652bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9412:748..2399+ (Ectocarpus fasciculatus EfasUO2)
CGATGGCACACGCCATGACGTGGGACCGTGCATGTTCTCGTGCTTGCCGT CCACCATCCACATCCACCGTCACCAAGGTCAACTACGTCGAACACTACGG GGTGAGACACCCTAAGAGCACTGGAGGCCCTTATTGTTGCGCCTGGTGTA CACTTCGTAGCTTCCTGGCAGCGGCGGTGATGCAAGCCTAACCTAACCGT GTGCTCACTTTATTCGCTTGACCAGATGGACAAAATTGGTGGTGATACGT CGTGTGTATGTATGTATGTATGCATGTATGTACGCATTTGGAACGTTAAC ATACCCTTGGGCACGGGACTTGCACTGAACGGATGAATGAAAAGCGTTGC CAAACGCGGTGGCAGGAGCCGAGATCATGGTGTTGACATGCAAGTTTGAG CTTCCTCACTCGCGCGCTTGACAGAGCTTGAAGACGTTGCCCCCACCGCA CGCTTGCCGCCCCGCCGTGCCCCCCTCCCAACCCCATGCAATTCCAATCG ATTCCATTGCGGCCCGCCTGGTTCCCGAAAATGCTAAATCGATCCACCGA TGGGAGCAGCTTGAGCGCAAGCGAGACGATCAGGGGAAAACGGAGCCGGT CGGGTTCGAGCACAGCTGGGACGCTCCCCACCGGCTGACCAACATGGTGC TGTTCAAGCTCCAGAGGCACGGGGACCACCACGTCAACAGCACTCGCCGG TACCAGACCCTTCGGGCCGAGCCCAGCCGCAGCCCCCAGGTGACTTGGAT TTTCCTGACACTACACATACCCCCGAGGCACGGGGCGTGGAAAAGTGCTG GTTGCGCTGCGCTAAGGAGAGGAAATAGGTGGAGCAGTGGCGATGCGGCA TGCTCCGTAGTACTGTGTTGTGCCGGCAGGAATTCCTTTGTTGAAACGCG TTGGGTGTAGTGTAGTGCATCCATCCGACCGAGAGAAGGATGGCGGCGCA GAGGCATCTGATGCGCACAACAGCAGCACCCCTTTATTGTTATTGTTTTT TCGGTGATGTTTCGGTTAAGAATCGCAATCACCACACCACGGTCACCAAT CTAGACTAGACGTCGGGAGGTTACATGGGCAGCGGAGCACAGCACGAAGT GGGAAGGTGCGGCCATTCACACCAAGAAAACAAGGGTACGAGATCGAATT AAGCAATAAACAACCCCCAGAAAGTTGTGGAAAACCCCGGGGCTTGACTT TTTTACGCTCTCGAAGAAACCGGCGCGCAGTGGGGGATCGCTACACTTTG AAACAAGGGCAGTATTGTAGCGCATCCGACCACCCGACCGAGCGGTTGTC GGCACTGGGCGTGCGTGAAGCCATACAACTTGTAAGAAAGTCGGAACATC ACCCTTCTCACGGTTGTGGTGTGCGGTGGTCCACATGTGCATGCGCGCGC ACGCAACCGATCGCGTACGTCTCTCTCTCTTACGTTACGTACGTCTTGTC TCCGGCGTTTGACACCCAGCTCCCGTTGGGCTACCCGGGCTGTATCCTCC TGGCGCTCTTCCCTCCCCTCTGGAGGGCCGTCATGGACAAGCGCGTGCTC AAGCTGCGGAGCAAGAACCACCCGGGAAGGGCTTGGCGTCACGGGCCCCC TTCGTAAGTGGGACCGACAGACTATCCCGCCACTCGAGTTTTTCCTTTCA TG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9412:748..2399+

>mRNA_E_fasciculatus_S2_contig9412.17460.1 ID=mRNA_E_fasciculatus_S2_contig9412.17460.1|Name=mRNA_E_fasciculatus_S2_contig9412.17460.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9412:748..2399+ (Ectocarpus fasciculatus EfasUO2)
ATGGCACACGCCATGACGTGGGACCGTGCATGTTCTCGTGCTTGCCGTCC
ACCATCCACATCCACCGTCACCAAGGTCAACTACGTCGAACACTACGGGC
TTGAGCGCAAGCGAGACGATCAGGGGAAAACGGAGCCGGTCGGGTTCGAG
CACAGCTGGGACGCTCCCCACCGGCTGACCAACATGGTGCTGTTCAAGCT
CCAGAGGCACGGGGACCACCACGTCAACAGCACTCGCCGGTACCAGACCC
TTCGGGCCGAGCCCAGCCGCAGCCCCCAGCTCCCGTTGGGCTACCCGGGC
TGTATCCTCCTGGCGCTCTTCCCTCCCCTCTGGAGGGCCGTCATGGACAA
GCGCGTGCTCAAGCTGCGGAGCAAGAACCACCCGGGAAGGGCTTGGCGTC
ACGGGCCCCCTTCGTAA
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