mRNA_E_fasciculatus_S2_contig9032.17125.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI) HSP 1 Score: 590 bits (1520), Expect = 3.190e-198 Identity = 329/366 (89.89%), Postives = 333/366 (90.98%), Query Frame = 3
Query: 3 KGDPEKEDKDLLKHRVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIVKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXX-AGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXX-----KNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLDNCSKYIGPGDSAEDCSPAPPAGQRLGSDDVVVYGTTVVP 1082
KGDPEKEDKDLLKHRVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETI+KSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQM XXXXX AGRGP RSKMTRL+NAVTPDNRGKSKAGLNGVGVS GS XXXXXXXXX KNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLDN S YIG GDS E+ SPA AGQR GSD+VVVYGTTVVP
Sbjct: 600 KGDPEKEDKDLLKHRVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIIKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMMEXXXXXQDHWGCAAAGSSATTAGRGPPRSKMTRLRNAVTPDNRGKSKAGLNGVGVSAGSSXXXXXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLDNTSTYIGRGDSPEEISPAVAAGQRYGSDNVVVYGTTVVP 965
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA) HSP 1 Score: 233 bits (595), Expect = 3.490e-68 Identity = 130/305 (42.62%), Postives = 181/305 (59.34%), Query Frame = 3
Query: 69 LPHTDQYVLRWESDWLVTLGKSVETIVKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARC-AAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLDNCSKY 980
+PH++Q++L WES LV LG SV ++ +A+Q+ L++T L + +++ P+ L++L+ ID+DW IG ERAD AGK+LA LL+REQG RPVTL+GTS+GARL+F+CLEE+ RRHELWE K +P RG+ G+ G C AAG+IEN LLGAPVG + RWERVAR+ HGR+INGY K D I+GL++R + LS+SV+G+Q +++ VEN DLS + S H Y ++PEI+ LL LD+C +Y
Sbjct: 1 MPHSEQHLLVWESKLLVELGDSVVKALQDAGLTALQQGLQFTALGVLAAAVSLPITLVALADYIDSDWAIGCERADKAGKVLAGILLSREQGTRPVTLIGTSIGARLMFSCLEEMVRRHELWEASG----------------------------------KQRASPPRRGRKGGGMGGP---------------------CNAAGIIENAVLLGAPVGVSPKRWERVARVVHGRLINGYFKKDGILGLIYRIRRLSVSVAGLQPIASRAVENADLSPAL-SQHMQYCSRVPEIMALLQLDDCRRY 249
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC4_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.880e-42 Identity = 110/335 (32.84%), Postives = 169/335 (50.45%), Query Frame = 3
Query: 45 RVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIVKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTP--DNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGV-------------------------ENVDLSSVVGSNHFNYNRKMPEILELLDLDN 968
+VWFW + T+QY LRWES L TLG SV +++S S +A +E YT AA++ ++AWP +I ID WT+ ERAD+AG++LA+ LL R G RPVTL+G S+GARLIF+CL + ++HE W ++ A+ P NRG + KN AG++E+V L+G PV ++W VA++ GR++N YS +D +G+++R + S +V+GI+ V+ V E++D+SSV+ H +Y +K+P+IL+L+ LD+
Sbjct: 185 QVWFWSQRFHGTEQYYLRWESATLTTLGSSVMELIQSASTAAAREVATYTVFAAVVAAVAWPYYIIKAFDSIDPIWTLACERADLAGQLLAETLLERAHGSRPVTLIGYSMGARLIFSCLRTLRQKHETWLAEVQEETA-------------------------------ALEPHGSNRGADERSA-----------------MFKNSP--VAGLVEDVVLMGTPV-PCGSQWTEVAKIVGGRLVNCYSATDWTLGILYRYQRWSTTVAGIRPVNPNAVDAEKLQGVDVDVDLTVNDEGAYWNLEDLDVSSVI-KYHSDYPKKIPQILDLVALDD 467
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA) HSP 1 Score: 169 bits (428), Expect = 7.240e-41 Identity = 106/314 (33.76%), Postives = 162/314 (51.59%), Query Frame = 3
Query: 27 KDLLKHRVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIVKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLDN 968
+DL + +W D P+ + + L WES L +G SV IV S Q A E L +T A+++++LAWP+ L+ + MID WTI E+AD AG++LA L+ +E+G RP+ L+G S+GARLI ACL E+AR H WE+ S S + A TP R K++ G +G+I+ V L+GAPV + + W + ++ GR++N YSK D ++ L++R L + +GI V G+ENVD+S +V H +Y K+ +IL L+ L++
Sbjct: 585 RDLSQDFSPWWLDMFPYLETFTLHWESKALSKMGSSVMDIVASFGQQAALEVLTFTAAASLVSALAWPITLLQAADMIDNSWTIACEKADRAGQLLAQILVRKERGHRPIVLIGFSMGARLIMACLSELARIHNSWEDGQNDKGQKPEVQIKA-------------STSAVQLSPTASTPS-REKTETGSP------------------------VSGLIDTVVLMGAPVSCSESSWVKARKVVAGRLVNCYSKKDWVLSLMYRYHKLVTNAAGIAPVHVCGIENVDVSELV-PGHQHYATKIKDILLLVGLED 859
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NN16_PHYIT) HSP 1 Score: 164 bits (414), Expect = 1.720e-40 Identity = 102/308 (33.12%), Postives = 146/308 (47.40%), Query Frame = 3
Query: 45 RVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIV-KSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLD 965
R W W+D+ P DQY L WE L GKS+ T + +S A E +KYT LAA+ ++A P ++ L+ +ID WT+ AD +GK+LADAL REQG RPVTLVG +GARLIF+CL+E+A+ + E G++EN LLG+PV W R+ GR+INGYS+ D ++G+++R + +L+ +GI + GVENVDLS ++G H Y K+ I++LL L+
Sbjct: 270 RAWRWKDRFPQGDQYCLIWEEAGLRRFGKSMRTFAAEQVSNYATTEIVKYTALAALFAAVAIPRVILRLADIIDNAWTVTMNAADTSGKLLADALRKREQGLRPVTLVGYGMGARLIFSCLKELAKSETIDES------------------------------------------------------------------------------CGIVENAVLLGSPVPMARDDWANARRVVSGRLINGYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIVDLLQLE 498
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFL1_9STRA) HSP 1 Score: 167 bits (424), Expect = 3.390e-40 Identity = 110/335 (32.84%), Postives = 169/335 (50.45%), Query Frame = 3
Query: 45 RVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIVKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTP--DNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGV-------------------------ENVDLSSVVGSNHFNYNRKMPEILELLDLDN 968
+VWFW + T+QY LRWES L TLG SV +++S S +A +E YT AA++ ++AWP +I ID WT+ ERAD+AG++LA+ LL R G RPVTL+G S+GARLIF+CL + ++HE W ++ A+ P NRG + KN AG++E+V L+G PV ++W VA++ GR++N YS +D +G+++R + S +V+GI+ V+ V E++D+SSV+ H +Y +K+P+IL+L+ LD+
Sbjct: 758 QVWFWSQRFHGTEQYYLRWESATLTTLGSSVMELIQSASTAAAREVATYTVFAAVVAAVAWPYYIIKAFDSIDPIWTLACERADLAGQLLAETLLERAHGSRPVTLIGYSMGARLIFSCLRTLRQKHETWLAEVQEETA-------------------------------ALEPHGSNRGADERSA-----------------MFKNSP--VAGLVEDVVLMGTPV-PCGSQWTEVAKIVGGRLVNCYSATDWTLGILYRYQRWSTTVAGIRPVNPNAVDAEKLQGVDVDVDLTVNDEGAYWNLEDLDVSSVI-KYHSDYPKKIPQILDLVALDD 1040
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Transmembrane (and coiled-coil domain-containing protein 4 n=3 Tax=Myotis TaxID=9434 RepID=S7QAR8_MYOBR) HSP 1 Score: 164 bits (416), Expect = 3.950e-40 Identity = 107/310 (34.52%), Postives = 161/310 (51.94%), Query Frame = 3
Query: 81 DQYVLRWESDWLVTLGKSVETIVKSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHE--------------LWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVG--VENVDLSSVVGSNHFNYNRKMPEILELLDL 962
+QY L WE+ +L+ LG ++ETI+ L+ QE LKYT L+ I +L WP +L+S++++ID W + R+ GK LA LL+R+QG RPVTL+G SLGAR+I+ CL+E+A+ + + E A + S ++TR + +P G+ + +EA G+IE+V LLGAPV A WE ++ GR+INGYS+ D ++ V+R S L V+G+Q V +ENVDLSSVV S H +Y ++M IL+ + +
Sbjct: 199 EQYCLAWEAKYLMELGNALETILSGLANIVAQEALKYTVLSGITAALTWPASLLSVANIIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQEKDCQGIIEDVVLLGAPVEGEAKHWEPFRKVVSGRIINGYSRLIASKAHSTGRITREADVPSPGPTGRLEV----------------------SEAVDCQGIIEDVVLLGAPVEGEAKHWEPFRKVVSGRIINGYSRGDWLLSFVYRTSSAQLQVAGLQPVLLQDRRMENVDLSSVV-SGHLDYGKQMDVILKAVGI 485
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IQF8_9STRA) HSP 1 Score: 163 bits (412), Expect = 6.360e-40 Identity = 104/308 (33.77%), Postives = 148/308 (48.05%), Query Frame = 3
Query: 45 RVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIV-KSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLD 965
R W W+D+ P DQY L WE L GKS+ + + +S A E +KYT LAA+ ++A P ++ L+ +ID WTI AD +GK+LA AL REQG RPVTLVG +GARLIF+CL+E+A N+ + D + G++EN LLG+PV A W RM GR+INGYS+ D ++G+++R + +L+ +GI + GVENVDLS ++G H Y K+ I++LL L+
Sbjct: 313 RAWRWKDRFPQGDQYCLMWEEATLRRFGKSMRSFAAEQVSNYATTELVKYTALAALFAAVAIPRVILRLTDIIDNAWTITMNNADTSGKLLAGALRQREQGLRPVTLVGYGMGARLIFSCLKELA---------------------------------------------NSESQDE---------------------------------SCGIVENAVLLGSPVPMARADWINARRMVSGRLINGYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIMDLLQLE 541
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLI0_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.630e-39 Identity = 106/308 (34.42%), Postives = 148/308 (48.05%), Query Frame = 3
Query: 45 RVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIV-KSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLD 965
R W W+D+ P DQY L WE L GKS+ + +S A E +KYT LAA+ T++A P A++ L+ +ID W I AD +GK+LA AL REQG RPVTLVG +GARLIF+CL+E+A+ E PD + G++EN LLG+PV W RM GR+INGYS+ D ++G+++R + +L+ +GI + GVENVDLSS++G H Y K+ I++LL L+
Sbjct: 447 RAWRWKDRFPQGDQYCLMWEEAVLRRFGKSMRRFAAEQVSSYATTEIVKYTALAALFTAVAIPRAILKLADIIDNAWVITMNAADESGKLLAGALRQREQGLRPVTLVGYGMGARLIFSCLKELAKGEE---------------------------------------------PDQ---------------------------------SCGIVENAVLLGSPVPMARDDWANARRMVSGRLINGYSEKDWMLGVMYRYQGWALNSAGIAPLDLAGVENVDLSSLIGG-HLEYKSKIGAIMDLLQLE 675
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L8H1_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.060e-39 Identity = 103/308 (33.44%), Postives = 145/308 (47.08%), Query Frame = 3
Query: 45 RVWFWQDKLPHTDQYVLRWESDWLVTLGKSVETIV-KSLSQSAMQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADALLNREQGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMXXXXXXXXXXXXXXXXXXXXXAGRGPSRSKMTRLKNAVTPDNRGKSKAGLNGVGVSGGSXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLD 965
R W W+D+ P DQY L WE L GKS+ T + +S A E +KYT LAA+ ++A P + L+ +ID WT+ AD +GK+LADAL REQG RPVTL+G +GARLIF+CL+E+A+ L E A G++EN LLG+PV W R+ GR+INGYS D ++G+++R + +L+ +GI + GVENVDLS V+G H Y K+ I+++L L+
Sbjct: 475 RAWRWKDRFPQGDQYCLVWEEAGLRRFGKSMRTFAAEQVSTYATAELVKYTALAALFAAIAIPRVIFRLADIIDNAWTVTMNAADASGKLLADALRQREQGLRPVTLIGYGMGARLIFSCLKELAKSDSLDE------------------------------------------------------------------------------ACGIVENAVLLGSPVPLARDDWTNARRVVSGRLINGYSDKDWMLGIMYRYQGWALNSAGIAPIDIAGVENVDLSEVIGG-HLEYKSKIGVIMDMLQLE 703 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9032.17125.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9032.17125.1 >prot_E_fasciculatus_S2_contig9032.17125.1 ID=prot_E_fasciculatus_S2_contig9032.17125.1|Name=mRNA_E_fasciculatus_S2_contig9032.17125.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=306bp MQETLKYTTLAAIMTSLAWPLALISLSSMIDADWTIGRERADVAGKILADback to top mRNA from alignment at E_fasciculatus_S2_contig9032:99..5210- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9032.17125.1 ID=mRNA_E_fasciculatus_S2_contig9032.17125.1|Name=mRNA_E_fasciculatus_S2_contig9032.17125.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5112bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9032:99..5210- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9032:99..5210- >mRNA_E_fasciculatus_S2_contig9032.17125.1 ID=mRNA_E_fasciculatus_S2_contig9032.17125.1|Name=mRNA_E_fasciculatus_S2_contig9032.17125.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9032:99..5210- (Ectocarpus fasciculatus EfasUO2)back to top |