mRNA_E_fasciculatus_S2_contig9003.17102.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9003.17102.1
Unique NamemRNA_E_fasciculatus_S2_contig9003.17102.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9003.17102.1 vs.
Match: Arginyl-tRNA (synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.080e-28
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:   43 MRTRRGSLLAYRRESVVVPLAALALLGSTSPTMTATAFLPTSLIGSSTRAMLLPRWYNGAASVSAATRVASRRAAHST 276
            MRTR GS LAYRRE  VVPLAALALLGSTSPTMT TAFLPTSL+GSSTR+M+LPRW+NGAASVSA  R ASRRAAHST
Sbjct:    1 MRTRPGSFLAYRREFFVVPLAALALLGSTSPTMTVTAFLPTSLMGSSTRSMILPRWHNGAASVSATARFASRRAAHST 78
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9003.17102.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Arginyl-tRNA1.080e-2884.62synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9003contigE_fasciculatus_S2_contig9003:2484..3750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size277
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionArginyl-tRNA Synthetase
Ec32 orthologEc-03_001410.1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842555.4019704-CDS-E_fasciculatus_S2_contig9003:2483..26231696842555.4019704-CDS-E_fasciculatus_S2_contig9003:2483..2623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9003 2484..2623 +
1696842555.415785-CDS-E_fasciculatus_S2_contig9003:3614..37501696842555.415785-CDS-E_fasciculatus_S2_contig9003:3614..3750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9003 3615..3750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9003.17102.1prot_E_fasciculatus_S2_contig9003.17102.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9003 2484..3750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9003.17102.1

>prot_E_fasciculatus_S2_contig9003.17102.1 ID=prot_E_fasciculatus_S2_contig9003.17102.1|Name=mRNA_E_fasciculatus_S2_contig9003.17102.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
MSTGCLLCSPCKRSMRTRRGSLLAYRRESVVVPLAALALLGSTSPTMTAT
AFLPTSLIGSSTRAMLLPRWYNGAASVSAATRVASRRAAHST
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mRNA from alignment at E_fasciculatus_S2_contig9003:2484..3750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9003.17102.1 ID=mRNA_E_fasciculatus_S2_contig9003.17102.1|Name=mRNA_E_fasciculatus_S2_contig9003.17102.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9003:2484..3750+ (Ectocarpus fasciculatus EfasUO2)
ATGTCAACGGGCTGTCTGCTGTGTTCACCCTGTAAGAGGAGCATGAGAAC
TCGGCGAGGGTCACTTCTCGCATATCGGAGGGAGTCTGTGGTTGTGCCTC
TGGCGGCGTTGGCACTTTTGGGCTCTACCTCGCCTACCATGTGAGAGAAC
AGCCGACAGACAGCAGCACCGCATGTCACATGTGTGGGCAACCCCGTACG
TAGCAGTAGCAGTTACACCGCACGCAACGAGTGCTTTACAGCAGTTGTGC
GCAAGGTCGACACCCTGCCCATGATGCACCTCGAGTTCGCTGTGAGTACA
GCTGCTCTCGTTCCCTATATCATCCCCCGAGAGGCGTGCGACTCGAGTGG
CTAGCAGCTGCACAAGGACGTCTACTCTGCCCGTGTGTCGCCGTGCATGC
TGCTGTAGTTTCCAGCAGTTTGTGGTACATCAAGGGTACATGTACAGGCA
GTGCCGGGATCCCTCGGCTGTATGCGGTGCTGCGTGAAGGGTAGATAACG
TGGTTGGTGAATGCTGGCGCGCCAAGTATGGGGGCATTGTTTTTGCTAAC
GCGAGGTGTGGCGGCAATTGGCGCGCGTTTGATGCAGATTTTCTGTCCCT
TTCCGTGTGACAAGGCCTACTGCTGTAGTGCTGATAGGAGACACACTTCC
AGTGGAGGTTCCGAGACATGGGGGTTGGACAACACTGCAGTTGTTGTCCA
ACCCCAATGCTGCTGTTGTTGCAGGTGTAGGGCGGATACACACTGCGCTG
TTGCTGCTTTGGCTACAGCAGTGTTCTCTTTATTCTGTCCCGTCAGTTTA
ACGGGCTATGTTTTGATTGGTTTCCGTGTGTCTACTTCATGCCCCCTAAG
CATGCCGGCGTGCGCGTACCGAGCACACGCTTCCGATACCCAGCAGAAGA
GCATGCATACAAGACAGCGATTTCTGAAACCAAAGTTACACTTCGCACCC
ACCCACCCAGCTTTCAGCGTGCGTGAGTGAAGTATTCATATTTGATACAT
GTGGCGCCTAGGCTTAGGCTTTGAGCTATTCGCGCTCATATTAGACTGCC
GTGTCGATAAGCATGAGCAGTTTCCTGCAGCACAACGACGTTCCCCCGCA
CCCCCCCCCCACCCACCCCTTACACACACAGGACGGCAACCGCATTTCTA
CCGACGAGCCTTATAGGGAGTTCAACAAGAGCCATGCTTTTGCCGAGATG
GTACAACGGGGCGGCGTCAGTATCAGCTGCTACTAGAGTCGCTTCAAGAC
GAGCTGCACATAGCACC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9003:2484..3750+

>mRNA_E_fasciculatus_S2_contig9003.17102.1 ID=mRNA_E_fasciculatus_S2_contig9003.17102.1|Name=mRNA_E_fasciculatus_S2_contig9003.17102.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9003:2484..3750+ (Ectocarpus fasciculatus EfasUO2)
ATGTCAACGGGCTGTCTGCTGTGTTCACCCTGTAAGAGGAGCATGAGAAC
TCGGCGAGGGTCACTTCTCGCATATCGGAGGGAGTCTGTGGTTGTGCCTC
TGGCGGCGTTGGCACTTTTGGGCTCTACCTCGCCTACCATGACGGCAACC
GCATTTCTACCGACGAGCCTTATAGGGAGTTCAACAAGAGCCATGCTTTT
GCCGAGATGGTACAACGGGGCGGCGTCAGTATCAGCTGCTACTAGAGTCG
CTTCAAGACGAGCTGCACATAGCACC
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