mRNA_E_fasciculatus_S2_contig8852.16947.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8852.16947.1
Unique NamemRNA_E_fasciculatus_S2_contig8852.16947.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N7_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.350e-76
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL 347
            TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLR+RFDIADTVA GGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL
Sbjct:  319 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRNRFDIADTVATGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL 433          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.850e-72
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL 347
            TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL
Sbjct: 2083 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL 2197          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNM6_9ARCH)

HSP 1 Score: 139 bits (350), Expect = 2.290e-35
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVTEL*PN 356
            T+N+GT AW APE+L      R +Y+ KVDVYSFG+V+WELWE++RPF++L+SRFDI D V AG RP I   CPP +  LI+RCWH DP++RP F  +V  L+ E+   +    L P+
Sbjct:  195 TSNMGTTAWCAPEILTASN--RTKYSVKVDVYSFGMVLWELWEKKRPFDELQSRFDIMDAVRAGKRPTISDNCPPAFKALIQRCWHTDPSRRPMFHYIVRYLKDELARVKRQKTLPPS 310          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: SIS8 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V665_SYMMI)

HSP 1 Score: 131 bits (329), Expect = 3.560e-32
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEI 320
            T+NLGT AW APE+L      +  Y+ KVDVYSFG+V+WELWER+RP+EDL SRFDI D V  G RP I   CPP    LI+RCWH+ P +RP F  +V  ++ E+
Sbjct:  674 TSNLGTTAWCAPELLTAMN--KTRYSVKVDVYSFGMVLWELWERKRPYEDLYSRFDIIDAVREGRRPTISSTCPPTLRSLIQRCWHEQPARRPTFAYIVRYVKDEL 777          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z0F9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 9.690e-30
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIE 323
            T+N+GTVAWAAPEML   +  RA Y  +VDVYSFG+V+WEL+E ++PF ++ SRFDI D V  G RPPI   CP  Y DLI +C  QDP  RP F  +V  LE E+E
Sbjct:  702 TSNMGTVAWAAPEMLA--KESRANYGLQVDVYSFGMVLWELYECKQPFSEMLSRFDIMDAVRKGVRPPISPSCPELYKDLIIKCVSQDPKLRPTFSFIVNRLERELE 806          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0N7_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.050e-29
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIE 323
            T+N+GTVAWAAPEML   +  RA Y  +VDVYSFG+V+WEL+E ++PF ++ SRFDI D V  G RPPI   CP  Y DLI +C  QDP  RP F  +V  LE E+E
Sbjct: 1538 TSNMGTVAWAAPEMLA--KESRANYGLQVDVYSFGMVLWELYECKQPFSEMLSRFDIMDAVRKGVRPPISPSCPELYKDLIIKCVSQDPKLRPTFSFIVNRLERELE 1642          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JXS2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.520e-27
Identity = 59/107 (55.14%), Postives = 69/107 (64.49%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGR-GCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEI 320
            TT +GTVAWAAPEML      +  YT KVD YSFGVV+WELWER RPF   +SRF I D V  G RP I R GCP  Y  LI  C  +DP+ RP F  +V+ L+ E+
Sbjct: 1662 TTLVGTVAWAAPEMLV--HEAKTNYTLKVDQYSFGVVLWELWERARPFSQYKSRFAIMDAVRDGERPRISRPGCPDGYKRLIGMCLQEDPSARPTFSYIVKKLKDEL 1766          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GX63_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.230e-26
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLR-SRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEI 320
            TTN+G+  WAAPE+L+  +   +EY+ K+DVYSFG++ W+L+    P+ D+  S   +A+ V +G RPPI  GCP  +A +++RCWH +P +RP F+D+V+ LE E+
Sbjct:  524 TTNIGSACWAAPEVLK--DAATSEYSVKIDVYSFGIICWQLYTCAVPYSDIPGSVLAVAEAVLSGVRPPIPAGCPRLFAKIMKRCWHDNPLRRPSFEDIVQLLEIEL 628          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNT0_PYTOL)

HSP 1 Score: 113 bits (283), Expect = 5.680e-26
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLR-SRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEI 320
            TTN+G+  WAAPE+L+  +    EY+ KVDVYSFGV+ W+L+  + P+ D+  S   +A+ V AG RP I   CP  +A ++RRCWH+DP +RP F+D+V+ LE E+
Sbjct:  761 TTNIGSACWAAPEVLKDEDS--TEYSLKVDVYSFGVICWQLYTCKSPYTDIPGSVLALAEAVIAGRRPEIPADCPTLFAKIMRRCWHEDPVRRPNFEDIVQLLEMEL 865          
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNC5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.880e-25
Identity = 57/110 (51.82%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    3 TTNLGTVAWAAPEMLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAAGGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQ 332
            T+NLGT A+AAPEML   +  R  Y+ KVDVYSFG+V+WE+ ER+ PF +L+SRFDI + V  G RP I   C   YA+L R C    P  RP F  +V  LE E E AQ
Sbjct:  191 TSNLGTTAYAAPEMLVPAK--RTHYSLKVDVYSFGMVLWEMLERQPPFMELKSRFDIMEAVVEGRRPLIHASCSDGYANLFRWCVAHAPQDRPTFPFIVRKLEDEAERAQ 298          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8852.16947.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein1.350e-7698.26kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Protein1.850e-72100.00kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Protein2.290e-3551.69kinase domain-containing protein n=1 Tax=archaeon ... [more]
SIS83.560e-3254.72protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
Hypothetical9.690e-3056.07protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.050e-2956.07protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical9.520e-2755.14protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Uncharacterized5.230e-2644.86protein n=2 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized5.680e-2647.66protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical1.880e-2551.82protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8852contigE_fasciculatus_S2_contig8852:1785..3219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score219.2
Seed ortholog evalue9.2e-55
Seed eggNOG ortholog2880.D7FTH4
Model size526
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size309
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.7477853-UTR-E_fasciculatus_S2_contig8852:1784..18251696842539.7477853-UTR-E_fasciculatus_S2_contig8852:1784..1825Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8852 1785..1825 +
1696842539.803393-UTR-E_fasciculatus_S2_contig8852:3043..32191696842539.803393-UTR-E_fasciculatus_S2_contig8852:3043..3219Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8852 3044..3219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.7624023-CDS-E_fasciculatus_S2_contig8852:1825..18701696842539.7624023-CDS-E_fasciculatus_S2_contig8852:1825..1870Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8852 1826..1870 +
1696842539.7780542-CDS-E_fasciculatus_S2_contig8852:2431..26081696842539.7780542-CDS-E_fasciculatus_S2_contig8852:2431..2608Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8852 2432..2608 +
1696842539.7917044-CDS-E_fasciculatus_S2_contig8852:2956..30431696842539.7917044-CDS-E_fasciculatus_S2_contig8852:2956..3043Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8852 2957..3043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8852.16947.1prot_E_fasciculatus_S2_contig8852.16947.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8852 1826..3043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8852.16947.1

>prot_E_fasciculatus_S2_contig8852.16947.1 ID=prot_E_fasciculatus_S2_contig8852.16947.1|Name=mRNA_E_fasciculatus_S2_contig8852.16947.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
MLRGGEGGRAEYTAKVDVYSFGVVMWELWERRRPFEDLRSRFDIADTVAA
GGRPPIGRGCPPPYADLIRRCWHQDPTKRPFFQDVVEDLEAEIEAAQAVT
EL*
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mRNA from alignment at E_fasciculatus_S2_contig8852:1785..3219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8852.16947.1 ID=mRNA_E_fasciculatus_S2_contig8852.16947.1|Name=mRNA_E_fasciculatus_S2_contig8852.16947.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8852:1785..3219+ (Ectocarpus fasciculatus EfasUO2)
TGACGACCAACCTCGGGACGGTGGCATGGGCCGCGCCGGAGATGTTGCGG GGAGGAGAGGGCGGCCGTGCGGAGTATACGGCCAAGGTATCAAGACGAAA GTTGCTTCTAGACTTGTTGTGAAGAAGAGACCTAGATGCTGTGGTCGTCG CGCCTCTTCTTTTTAGAGGGCGATTTTCGTGCGTACGACAACAAACAACA CGAAAGATTCCACTTCCGCTTGTGCGTCATACAGAGCCTTTTTCTTTTTG GCGAATTTCCTTGTGTACGGCAACAAGCAGCGCGAAAAGTCCAAATTTCG TATGATAAAAAGGTGTAACTTTCCTTGGTGCCAACGGAGAATCCAATGAA GAATAATGACAATTGAAAACAATTCCGGCACGGTGCGAGAGCAGCTGCCC TATTGGCTAGGACCCGCTCAGCTGGTCTAGCTTCTGCCGGGCTATTGTGG TTGTTGTATGCATGTGGATGCTTGATGCTTCGATTGAAATGGGCGCAGAG CGTCCTTTTTTATTTTCCGGGTAGCAAACTTGAGCAGCCAAAGGCTACGA TTCTGATTGGCCATTCCGATGCAACGCTTGGTGTTAACATACCTAGTTGC CACACCGTCGTTACATCACGATTTCACCCCCCCCCTTCAACCCACAGGTG GACGTGTATTCGTTCGGTGTTGTCATGTGGGAGCTGTGGGAGCGGCGACG GCCCTTCGAGGACCTCCGTAGCCGCTTTGACATCGCAGACACGGTGGCGG CCGGAGGACGACCGCCAATCGGGCGGGGTTGCCCCCCGCCCTACGCTGAC CTGATACGCCGATGTTGGCACCAGGTGGGCTCGCGCGCTCAGATGAATTA ATCCGGCTTCTTCCCATGCCGATGGGTTGTTTGGGTTGTTCCTGTTCTAA TCATTTCGGTGGCTAGCTACGTGGTTTGTCGTGCGTTTCTTGGGTGCTCG TGGTAGAGGAATTGCCGTGCAGGCAGCGTTATCCTGGCTGGAAGAGAGAG CGAGCTTCCTTTCCGCGGCCCTCACATGTGTTGTGTGCCGCCGCTGTTTT CCTTCCTTTCAACTGCGGCGTGCGCTTCTTTTTGATTGACCCCCTTACCG TATCCCTCTCTACGACGCTCTGGCTTCCGCGGCGCTGTGTATGTGCGTGT TGAACCTCCCCGCTCTTTCCAGGACCCGACGAAAAGACCGTTCTTCCAAG ATGTCGTCGAAGACTTGGAAGCGGAGATCGAGGCTGCTCAGGCTGTGACA GAGTTGTAACCGAACTGCTGCGCACGTGTGCGGTGGTGACCCCCCTGCGA CGTTTCGAAGGTCTTTCAGATGGAATCAAGGTTCTGCGTGATGCGCGGAG CGTACGGGAAAGTCCATCAGCGGATAATTCTTTCATCATGCTCAGGTGTT GAAGCCAAAGACGTTGGCCGGATTGTTGTCAGCAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8852:1785..3219+

>mRNA_E_fasciculatus_S2_contig8852.16947.1 ID=mRNA_E_fasciculatus_S2_contig8852.16947.1|Name=mRNA_E_fasciculatus_S2_contig8852.16947.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8852:1785..3219+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGCGGGGAGGAGAGGGCGGCCGTGCGGAGTATACGGCCAAGGTGGA
CGTGTATTCGTTCGGTGTTGTCATGTGGGAGCTGTGGGAGCGGCGACGGC
CCTTCGAGGACCTCCGTAGCCGCTTTGACATCGCAGACACGGTGGCGGCC
GGAGGACGACCGCCAATCGGGCGGGGTTGCCCCCCGCCCTACGCTGACCT
GATACGCCGATGTTGGCACCAGGACCCGACGAAAAGACCGTTCTTCCAAG
ATGTCGTCGAAGACTTGGAAGCGGAGATCGAGGCTGCTCAGGCTGTGACA
GAGTTGTAA
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