mRNA_E_fasciculatus_S2_contig884.16939.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig884.16939.1
Unique NamemRNA_E_fasciculatus_S2_contig884.16939.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig884.16939.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S0_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 2.140e-109
Identity = 278/301 (92.36%), Postives = 282/301 (93.69%), Query Frame = 1 
Query:    1 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-LDRGARKKKRAKDKGRKKAWLWRYVNVEKKKLLVWDRRGGRLLRSISLKDIESLLVIPDEDAPASILEVYISSPSTSSAASNGTVAGDGSGDSPVEGAGDEGDEEAQRAXXXXXXXXXXXXXXXXXXLVLQARSRRETLLWAKVLQENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDSGINN 900
            MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXX  LDRGARKKKRAKDKG KKAW WRYVNVEKKKLLVWDRRGGRLLRSISL+DIESLLVIPDE APASILEVYISSPS S  ASNGTV GDGS +SP+EGAGDEG+EEAQ  XXXXXXXXXXXXXXXXX LVLQARSRRETLLWAKVLQENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDSGINN
Sbjct:    1 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDRGARKKKRAKDKGGKKAWAWRYVNVEKKKLLVWDRRGGRLLRSISLRDIESLLVIPDEGAPASILEVYISSPSNSGGASNGTVTGDGSENSPIEGAGDEGEEEAQXXXXXXXXXXXXXXXXXXXVLVLQARSRRETLLWAKVLQENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDSGINN 301
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BLAST of mRNA_E_fasciculatus_S2_contig884.16939.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.830e-18
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP 129
            MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP
Sbjct:    1 MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASP 43
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig884.16939.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.140e-10992.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.830e-18100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig884contigE_fasciculatus_S2_contig884:17135..21265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2036
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002830.1
Cds size1020
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig884.16939.1prot_E_fasciculatus_S2_contig884.16939.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig884 18151..21265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.0001357-UTR-E_fasciculatus_S2_contig884:17134..181501696842539.0001357-UTR-E_fasciculatus_S2_contig884:17134..18150Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig884 17135..18150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.0194314-CDS-E_fasciculatus_S2_contig884:18150..182511696842539.0194314-CDS-E_fasciculatus_S2_contig884:18150..18251Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 18151..18251 -
1696842539.0310812-CDS-E_fasciculatus_S2_contig884:18333..184091696842539.0310812-CDS-E_fasciculatus_S2_contig884:18333..18409Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 18334..18409 -
1696842539.0407104-CDS-E_fasciculatus_S2_contig884:18744..188251696842539.0407104-CDS-E_fasciculatus_S2_contig884:18744..18825Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 18745..18825 -
1696842539.0526376-CDS-E_fasciculatus_S2_contig884:19329..195871696842539.0526376-CDS-E_fasciculatus_S2_contig884:19329..19587Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 19330..19587 -
1696842539.0678253-CDS-E_fasciculatus_S2_contig884:20204..204861696842539.0678253-CDS-E_fasciculatus_S2_contig884:20204..20486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 20205..20486 -
1696842539.08086-CDS-E_fasciculatus_S2_contig884:21043..212651696842539.08086-CDS-E_fasciculatus_S2_contig884:21043..21265Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig884 21044..21265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig884.16939.1

>prot_E_fasciculatus_S2_contig884.16939.1 ID=prot_E_fasciculatus_S2_contig884.16939.1|Name=mRNA_E_fasciculatus_S2_contig884.16939.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=340bp
MSAHFDGGAEIAGRRLREVEVSYVDDPTLDMGAEDSDDCPASPPPTYYLR
VREENKRRATGGGNGGGRDDDDAESNGGRAEQETGEGGGKSDDDADNDAN
DDTNNNNSLDRGARKKKRAKDKGRKKAWLWRYVNVEKKKLLVWDRRGGRL
LRSISLKDIESLLVIPDEDAPASILEVYISSPSTSSAASNGTVAGDGSGD
SPVEGAGDEGDEEAQRARRRRQQESGEGEGAGGGVLVLQARSRRETLLWA
KVLQENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDSGINN
NNNNNNTAAAKRPSIAWACSEQTPPSPKAQSTAPRLRAS*
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mRNA from alignment at E_fasciculatus_S2_contig884:17135..21265-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig884.16939.1 ID=mRNA_E_fasciculatus_S2_contig884.16939.1|Name=mRNA_E_fasciculatus_S2_contig884.16939.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4131bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig884:17135..21265- (Ectocarpus fasciculatus EfasUO2)
ATGTCCGCCCACTTCGACGGAGGCGCGGAGATCGCCGGGCGGAGGCTCCG
AGAGGTGGAGGTCTCGTACGTGGATGACCCGACGCTCGACATGGGGGCCG
AGGACTCGGACGATTGCCCCGCCTCTCCGCCGCCGACCTACTACCTCCGC
GTCCGCGAGGAGAACAAGAGGAGGGCGACGGGGGGCGGCAACGGTGGGGG
TCGTGATGATGATGATGCCGAGGTGAAGAAGTCAAACACCTGTGGCTCGC
TGTTGTACTTAGTCCTGCTGCGTATTTTCCGTGAGAGAAAGTAAACACCA
TACAGCAGTATCAGGCCGTTACACACAAACCGTCTGGCATGTTTTTCAAA
CCCTACCGCTGGTGTATGCATAGCAACGTAGTCTACTTGGACTACAATTT
CCTGGTACCTTCTTATCGCGAGGTAGGGTCTGCTTTTCTGCTCTCCAGCT
CCGACTCCGGCGGGCCTCGATTATATCGCAGGCTGCGAACCTCTGCTCAC
TCTGTTGCAGCAGTACATGTAGTCTAACGTCTAACCTGCTTCAGTCTCGT
CTCGTGGCCGTCATCTGCGGATCTTTGGGCCGTACCACACGACAGGAGCA
CAGCAGTAGTACTCAGGAAACTTCCTTGCGGACCGAGAGATGATTTCGCA
GCGAATGACAACATTTCAGGCATAAGAAAACTCCCCCGCCGCCTGTGCAA
AAGAAGTGGAGTATCCACAACGCATGTCTTTAGTTTGTCGTTAACGCAGC
TATGGTTTCTTGGTCCACCCTCTCGACAGAGCAATGGCGGACGGGCTGAA
CAGGAGACGGGGGAAGGGGGAGGCAAGAGCGACGATGACGCCGACAACGA
CGCAAACGACGACACCAACAACAACAACAGCTTAGACAGAGGGGCCAGGA
AGAAGAAAAGAGCGAAGGACAAGGGTAGAAAGAAGGCGTGGTTGTGGCGG
TACGTGAACGTGGAGAAGAAGAAGCTCCTGGTTTGGGACAGGCGGGGTGG
GCGGCTGCTGAGGTCGATCTCTCTCAAGGACATCGAGTCCCTCCTGGTAA
TTCCGGACGAGGTGAGATAAACGAAGAGATGTGCGTGTTAGCAGGGGTAG
GTCAGAGAGAGGGAGCATGAGAGAGAGAGAGAGAGAGAGAGAGATACGTT
TTTGACAATACGGATTTTCAACACCCGCAGACCATGAGAAATCCAAGTCG
TAGTTCAGAGACAGAGGTGGGTTCGACACACTGAATCAAGTTGGACTCTT
CAAAGGAAGTTACGAGACGTGTGTGAGCGAGGAACCGGGAGACAGGGGAG
TAGAGACAGACGAAGGGAGAGGAACATGGAGAGGACGAAGAGAAACTCTG
GGCAAGAGGAAGTGTGCACCATGTACAATTGCACCGAAATCACCCTTGTC
GTCGGAGCATTGCGTGCTCGGTTAGTTTGCGTCGCCGATCGGTGTCCAAG
AGACCGGCTGCCACTGCTCTCATACGTACTGGACATCAGCAGCCCCACTC
CCCGACCCCCGCTTCTTTCATCACGCCGGTGTCCTCCGATTCTCCCCATT
TACTCAACTGCTGTCGTCGTCACAACAGTGCGATTCCGCGGTGCCCCCCG
ACCCCCCATATCGAGACCACCCCTCCTGCCTGTGTCCCCTCTCACCCTTG
CTGAACTACGAACCGGAAAAACGGTCAGGACGCACCGGCCAGCATTCTCG
AGGTGTACATTTCTTCCCCTTCAACCAGTAGTGCCGCAAGCAACGGTACT
GTGGCCGGCGACGGCAGCGGGGACAGCCCCGTCGAAGGCGCCGGGGATGA
AGGGGACGAGGAAGCGCAACGCGCACGACGCCGGCGGCAACAAGAGAGCG
GGGAGGGGGAAGGGGCTGGTGGGGGCGTTCTTGTCCTGCAGGCGCGGTCG
AGGAGGGAGACGTTGCTCTGGGCCAAAGTGCTCCAGGTGGGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCCGTTGTTTTA
GTTTGTGTTCGTTGTTGTTGTTGCTGCTGTTGTTCATTGTCAGTATTTTT
TATGTTCGGAGATGAATCACCAGCGTTCATCTTTACCTGGATCACTTCTT
CTCCGTTTTGCGTTGCCTGTTGTCGATTCCGTGTCCCGCGCATGTGTACA
ATGCTTCGAGGTTTCCCTGCGTTCACGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCANNNTTCTTCTTGT
GTTTTGTTGTTTGTTTGTTGTTTCCTTTGTCCGCCGCGGTTGTCTATCTT
TGTGGGGGTTTTTTCTTTTAACGACCCCCCCCCCCCCCCCCCCCTTTTCC
CCGACTGCGCCCCCGCTCTTCTTCCTGCACCGGCATCGCGCCGCTCGATT
GATGTGTCGGTTCGATGGTCGATCTCTGTATTCTGCACAGGAAAACGTCG
AGCTCATGACGAAGCGCCAGGTGCCGTTGGAGAACAGGGACGAGGAGACA
AGTCTCAGCGATGTCCAACAGGTGCGTGGGAGACCCGTACGCTATTAGAC
CGTCGAGGGCCCCTTGCTTTTTCCACTTGCCTTCTCGTGTCCCACCTTCA
ACGATACTTTGTACTGCCAGAGAGAGAGGGACATACAGACAGACGAGAAA
ATACATATCACAGAGAGAGGGAGAGATATAATAGAGATGGAGACAGGGAG
AGAGAGAAGTAGAAAGAGGGTGACAGGTCAGGACAGCGAGATGTTTTCTT
GCTCGTCTCTCTTGCTCTCATACTCCCGGTAGTGATCGATTAAATTGAGT
CTTGCCCTCCTTCGTCTCTCTCTTTTGCTGCGCTTCCTTCTCTCGGGTTT
CCGCAGCTCGCAAAGCTCTTGACGCACCAGCTGTCCGAACTCCAGGACAG
CGGTATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACGACAACAAGAAGAAGAACAGCACCAACAACCAGAGCGACGGC
AACGACAACACCAGCAGCAGCCGCGAAGCGCCCAAGCATCGCTTGGGCTT
GTTCGGAGCAGACTCCTCCATCCCCGAAGGCGCAGAGTACGGCACCACGC
CTGAGAGCTAGCTAGCTCGATAAGAGCGAGCGGACGTGGAGGAGGAGATG
AAAGGAGGCGTGTGCGTACGGGGTCTCCGGGGCACCTTTCCCACGCCCTG
TCGCTGTGGTCGTCACGTAAAGGTGGAGACGCAGGGTAGATCAGTGAATG
TATTGTGTATAGAGTTTTGTATTGGTATGAGAGGCGTGTGCCGCGGGGGC
CGGGCGGAGCACTGTCTATGGCAGTATATTTTTTTTACGGGGTTTTGTAG
AGTGGTGTCTACATGGAGGCGTTTTTCTGGCCGGGAAAACAAAACGCATG
TCCAGGATGCGATGTGCGTTGTTTCCGGGAGGGTGCACACGTTTACACCG
TGCCCATGGGGCTACGTATTAGCTCTGCGGCACAACAGGAAGCATTCACC
GGAGGTTGGGGGGGAGACCCTCCACTCCGTGCAGCCAGGGTCCATCCAGA
TGCTACGTGGTAGTGGTAGCGCCGAACCAACGTTTTTGTTCTGATAGCAA
TGAGCTGAGTCCTCGTCGCTCGAAGAGAACCACCCAACAGTGGTCCGTGG
AAAAGAAACCTGTCGTTACGAAGGCAGACCAGATCGAATGCAGTTGGTAT
CCATGAGGGCAGCAGCCCCTCCGGTTGTGAATATGTGTTCCGGAGTACGG
AGCGTTCTCTAGCTGTGTTACAGAGTACGTAGCGTTCCCGTGGGCAGCTA
AGGGCAGATCCGGCAGAAGTTAATGACGATGTGCTTGCAGTCTTGTCACG
AGAAAGGTACTCTTACCCTTGACCATGACCTTGGGACCTGGACGACCGAC
AGCTCCCGGTGCGGGTGCGTGTACGTGTGTGTACCGTACGCAGGTTGCAT
AAAGCAAGCTATCACACAGCCAGGACCGATTTTTTCAATGCTCGATTGCT
CGGCAGAAAAGCAGGGACTGTGCCGGAAATGGCAGGGTTAAAACTGTCTC
GTCGTGAACAATCCGAGACTGTACATTTTGATTTCGGTATCCTCTTCGTC
GTGGAACTATATAGGCTTGAATTCCGGTCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig884:17135..21265-

>mRNA_E_fasciculatus_S2_contig884.16939.1 ID=mRNA_E_fasciculatus_S2_contig884.16939.1|Name=mRNA_E_fasciculatus_S2_contig884.16939.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1020bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig884:17135..21265- (Ectocarpus fasciculatus EfasUO2)
ATGTCCGCCCACTTCGACGGAGGCGCGGAGATCGCCGGGCGGAGGCTCCG
AGAGGTGGAGGTCTCGTACGTGGATGACCCGACGCTCGACATGGGGGCCG
AGGACTCGGACGATTGCCCCGCCTCTCCGCCGCCGACCTACTACCTCCGC
GTCCGCGAGGAGAACAAGAGGAGGGCGACGGGGGGCGGCAACGGTGGGGG
TCGTGATGATGATGATGCCGAGAGCAATGGCGGACGGGCTGAACAGGAGA
CGGGGGAAGGGGGAGGCAAGAGCGACGATGACGCCGACAACGACGCAAAC
GACGACACCAACAACAACAACAGCTTAGACAGAGGGGCCAGGAAGAAGAA
AAGAGCGAAGGACAAGGGTAGAAAGAAGGCGTGGTTGTGGCGGTACGTGA
ACGTGGAGAAGAAGAAGCTCCTGGTTTGGGACAGGCGGGGTGGGCGGCTG
CTGAGGTCGATCTCTCTCAAGGACATCGAGTCCCTCCTGGTAATTCCGGA
CGAGGACGCACCGGCCAGCATTCTCGAGGTGTACATTTCTTCCCCTTCAA
CCAGTAGTGCCGCAAGCAACGGTACTGTGGCCGGCGACGGCAGCGGGGAC
AGCCCCGTCGAAGGCGCCGGGGATGAAGGGGACGAGGAAGCGCAACGCGC
ACGACGCCGGCGGCAACAAGAGAGCGGGGAGGGGGAAGGGGCTGGTGGGG
GCGTTCTTGTCCTGCAGGCGCGGTCGAGGAGGGAGACGTTGCTCTGGGCC
AAAGTGCTCCAGGAAAACGTCGAGCTCATGACGAAGCGCCAGGTGCCGTT
GGAGAACAGGGACGAGGAGACAAGTCTCAGCGATGTCCAACAGCTCGCAA
AGCTCTTGACGCACCAGCTGTCCGAACTCCAGGACAGCGGTATCAACAAC
AACAACAACAACAACAACACAGCAGCCGCGAAGCGCCCAAGCATCGCTTG
GGCTTGTTCGGAGCAGACTCCTCCATCCCCGAAGGCGCAGAGTACGGCAC
CACGCCTGAGAGCTAGCTAG
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