mRNA_E_fasciculatus_S2_contig8732.16839.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 194 bits (494), Expect = 5.290e-55 Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GG+ +Q G FAVVLEYS DNEL AQI+GDISTPAPWVALS+V SAV LMLLDFPGLRSRGSL CP+HGDAM LA+ TR GD +LE S CRQCS DT G+GAAAI LVRMVDIR DRDVI EV+AR
Sbjct: 831 VLVHGGVGEQDRSGIFAVVLEYSPSDNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGDKILEGSRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFREVKAR 964
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 190 bits (483), Expect = 1.560e-53 Identity = 99/134 (73.88%), Postives = 109/134 (81.34%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GGL D+ FAVVLEYS DNEL AQI+GDISTPAPWVALS+V SAVRLMLLDFPGLRSRGSL CP+HGDAMLL +K T+AG LLE SGC QCS DT G+GAAAI LV MVDIR DRDVI +V+ R
Sbjct: 731 VLVHGGLGDEDGHEIFAVVLEYSSSDNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKLLEPSGCPQCSPDTRGLGAAAIDLVSMVDIRLDRDVIFRDVKQR 864
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 186 bits (471), Expect = 2.390e-52 Identity = 97/134 (72.39%), Postives = 106/134 (79.10%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+G Q R TFAVVLEYS DNEL A+I+GDISTPA WVALS+V SAV+LML+DFPGLR +GSL CPEHGDAML DKA R GD LLE S C QCS DTGG+GAAAI LVR VDIR DRDVI EV+AR
Sbjct: 383 VLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFKEVKAR 516
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 183 bits (464), Expect = 4.790e-51 Identity = 96/134 (71.64%), Postives = 106/134 (79.10%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+G L Q R TFAVVLEYS DNEL A+I+GDISTPA WVALS+V SAVRLML+DFPGLR +GSL CP+HGDAML D A R GD LLE S C QCS DTGG+GAAAI LVR VDIR DRDVI +V+AR
Sbjct: 522 VLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFNDVKAR 655
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 178 bits (451), Expect = 3.300e-49 Identity = 91/134 (67.91%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GGL Q ER TFAVV+EYS DNEL+AQI+GD+STP PW A S+V SAV LML+DFPGL +G L CP+HGD ML +KATR GD LE S C QCS DTGG+GAAAI L+R VDIR DRDVI EV+AR
Sbjct: 835 VLVHGGLGVQDERRTFAVVVEYSSTDNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVNKATRDGDKFLEGSRCPQCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKAR 968
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 172 bits (437), Expect = 2.530e-47 Identity = 91/134 (67.91%), Postives = 101/134 (75.37%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
V V+GG QG FAVVLEYS +NEL A+I+GDISTP PW+ALS+V SAV LM+ DFPGLRSRGSL CP+HGDAMLLA K R GD LE S C QCS DT G+GAAAI LVRMVDIR DRD I EV+ R
Sbjct: 759 VFVHGGHGYQGGHEMFAVVLEYSSANNELTAKIFGDISTPTPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVPRPGDKFLEGSRCPQCSADTRGLGAAAIDLVRMVDIRLDRDEIFHEVKER 892
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 171 bits (433), Expect = 8.770e-47 Identity = 90/134 (67.16%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GGL D RG FAVV+EYS DNEL AQI+GDISTPAPWVALS+V SAV LML+DFPGLR +G L CP+HG+ M A+K RAGD LER C +CS +T G+GAAAI LV +VDIR DRDVI EV+AR
Sbjct: 901 VLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQHGNEMPFANKVNRAGDKFLERK-CPRCSPETRGLGAAAIDLVCLVDIRLDRDVIFREVKAR 1033
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 169 bits (427), Expect = 2.200e-46 Identity = 90/134 (67.16%), Postives = 101/134 (75.37%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GGL Q R TFAVVLEYS NEL AQI+G ISTPA WVALS+V SAVRLML+DFPGLR +GSL CP+HGDAM + A GD LLE S C CS DTGG+G AAI LVR+VDIR +RDVI V+AR
Sbjct: 349 VLVHGGLGVQDGRSTFAVVLEYSSAGNELTAQIFGGISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMPFVNMARSDGDKLLEGSRCPHCSEDTGGLGEAAIDLVRLVDIRLNRDVIFNGVKAR 482
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 166 bits (421), Expect = 3.570e-45 Identity = 87/134 (64.93%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GGL D G RG FAVVLEYS D++L QI+GDI TPAPWVALS+V SAV LML+DFPGLR G+L CP+HGDAML+A+K T+AG+ L+R C +CS +T G+GAAAI L+RMVDIR DR I EV R
Sbjct: 637 VLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGETFLKRR-CPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMER 769
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 166 bits (419), Expect = 6.800e-45 Identity = 87/134 (64.93%), Postives = 100/134 (74.63%), Query Frame = 1
Query: 1 VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVASAVRLMLLDFPGLRSRGSLNCPEHGDAMLLADKATRAGDNLLERSGCRQCSHDTGGVGAAAIHLVRMVDIRQDRDVIAIEVRAR 402
VLV+GGL D+ G FA VLEYS +N L AQI+GD S A WVALS+V SAV LMLLDFPGLR RGSL CP+HGD +LL +K TRAGD L S C+QCS DT +GAAAI LVRMV++R DRDVI EV+ R
Sbjct: 1067 VLVHGGLGDEDGYGIFAAVLEYSSAENGLTAQIFGDTSFSAAWVALSYVMSAVSLMLLDFPGLRWRGSLKCPQHGDTILLTNKVTRAGDKFLAGSRCQQCSADTRALGAAAIDLVRMVNVRLDRDVIFREVKER 1200 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8732.16839.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8732.16839.1 >prot_E_fasciculatus_S2_contig8732.16839.1 ID=prot_E_fasciculatus_S2_contig8732.16839.1|Name=mRNA_E_fasciculatus_S2_contig8732.16839.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp VLVYGGLTDQGERGTFAVVLEYSLDDNELVAQIYGDISTPAPWVALSHVAback to top mRNA from alignment at E_fasciculatus_S2_contig8732:4052..5563+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8732.16839.1 ID=mRNA_E_fasciculatus_S2_contig8732.16839.1|Name=mRNA_E_fasciculatus_S2_contig8732.16839.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1512bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8732:4052..5563+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8732:4052..5563+ >mRNA_E_fasciculatus_S2_contig8732.16839.1 ID=mRNA_E_fasciculatus_S2_contig8732.16839.1|Name=mRNA_E_fasciculatus_S2_contig8732.16839.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=402bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8732:4052..5563+ (Ectocarpus fasciculatus EfasUO2)back to top |