mRNA_E_fasciculatus_S2_contig8548.16674.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI) HSP 1 Score: 310 bits (793), Expect = 4.390e-98 Identity = 178/263 (67.68%), Postives = 182/263 (69.20%), Query Frame = 1
Query: 1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR*R---WGHGGGGVETAKAGTLFTLV*---VVFFGVIFVHMSRIQ 771
+AATGFCTRTLKGDSEWVRRVALSDDG VVES+AFAPESAER LATAVGS GG GGG EGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGH VTALAMHKTSPIVVSGGVD ELHVWE WG GGG E + L + VVFFGVIFVHMSRIQ
Sbjct: 230 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVESIAFAPESAERALATAVGSEGG------------------GGG------EGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWELSLTMGTWGGRGGGGERERWARLEHYLHWFWVVFFGVIFVHMSRIQ 468
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA) HSP 1 Score: 202 bits (514), Expect = 9.520e-57 Identity = 106/222 (47.75%), Postives = 144/222 (64.86%), Query Frame = 1
Query: 1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTA-WGEEGAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+ ATG+C TL G S+WVR VA+SDDG LASCGND S+ W + + L +REH HVVESVAFA A+ + +A N A G G G V A G+ GA RR F+ SGSRD+TV+LW A G LM F+ HENWVRCV HP G +V+S ++DR++R +D++TGRC R L++AH HF+T+ +H + P++V+GG+D+ ++VWEC
Sbjct: 234 ELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQEQAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL) HSP 1 Score: 193 bits (491), Expect = 1.130e-53 Identity = 98/222 (44.14%), Postives = 142/222 (63.96%), Query Frame = 1
Query: 7 ATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAP-----ESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+TG+C T+ G ++WVR + +SDDG LASCGND ++ W + + L LREH HVVESV FA ++ E+ LA + S G A ANG +A G + +F+ SGSRD+TV+LW A G LM F+ HENWVRCV HP G +V+S ++D+++R FD++TGRC R +++AHGHF+T+L +H T P++V+G +D+ ++VWEC
Sbjct: 219 STGYCLHTMSNGHADWVRNITVSDDGLYLASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVG-------APLDAANG-------SAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD) HSP 1 Score: 189 bits (481), Expect = 7.690e-52 Identity = 102/236 (43.22%), Postives = 146/236 (61.86%), Query Frame = 1
Query: 1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESA-----ERTLATAVGSAGGSAQPG---AAANKPR--------ANGAGGGGGVTAWGEEGAVRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+ +TG+C TL G S+WVR VA+SDDG LA+CGND S+ +W + + L +REH HVVESV FA A E+ A + +AG G A A P + VT +VRR +F+ SGSRD+TV+LW A G LM F+ HENWVRCV HP G + +SA++D+++R +D++TGRC R L++AH HF+T++ +H T P+++SG +D+ ++VWEC
Sbjct: 236 EISTGYCVNTLNGGHSDWVRDVAVSDDGLYLATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAVVAIGNGEAVARSPEDALTTDMVVD-------VTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Ge1_WD40 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE) HSP 1 Score: 184 bits (468), Expect = 1.380e-51 Identity = 105/176 (59.66%), Postives = 106/176 (60.23%), Query Frame = 1
Query: 1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 528
+AATGFCTRTLKGDSEWVRRVALSDDG ESVAFAPESAERTLATAVG RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK
Sbjct: 164 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVAFAPESAERTLATAVG-------------------------------------RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 302
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN) HSP 1 Score: 188 bits (478), Expect = 1.420e-51 Identity = 95/221 (42.99%), Postives = 136/221 (61.54%), Query Frame = 1
Query: 1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+ +TG+C T+ G ++WVR + +SDDG LASCGND S+ W + + L LREH HVVESV FA A+ AQ + P + A G G T A R+ F+ SGSRD+TV+LW A LM+FS HENWVRCV HP G + +S ++DR++R D++TGRC R ++ AH HF+T+L +H + P++++GG+D+ ++VWEC
Sbjct: 231 EISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKF-----HAQKLVTVSSPSSETALNGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC) HSP 1 Score: 187 bits (476), Expect = 3.530e-51 Identity = 99/228 (43.42%), Postives = 139/228 (60.96%), Query Frame = 1
Query: 1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTL---------ATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+ +TG+C TL G ++WVR VA+S DG LASCGND S+ W + + L +REH HVVESV FA E+ + AT S + N+ + AG GV + R + + SGSRD+TV+LW A G L+ F+ HENWVR V HPSG + LSA +D+++R FD+++GRC R L++AH HFVT L +H + P++VSGG+D+ ++VWEC
Sbjct: 230 ELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVTDSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Platelet-activating (factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA) HSP 1 Score: 186 bits (473), Expect = 6.090e-51 Identity = 100/226 (44.25%), Postives = 133/226 (58.85%), Query Frame = 1
Query: 1 QAATGFCTRTLKG-DSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTL------ATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR 657
+ +TGFC R+L G ++WVR +A S DG +LAS G+D V VW++ + LREH+HVVE+VAF P + +T +GS G A G + +G+ ++ SGSRDKT+ LWNA G CL+ + HENWVR V HPSG F+LS SDDRS+R FD+ RC R L DAH FV+ALA H T P + +G V+RE+ +WECR
Sbjct: 231 EVSTGFCQRSLVGAHTDWVRCIATSADGALLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQS-------------------QGSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RP37_9STRA) HSP 1 Score: 176 bits (447), Expect = 5.920e-47 Identity = 103/230 (44.78%), Postives = 134/230 (58.26%), Query Frame = 1
Query: 1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTL---------AT-AVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+ +TG+C TL G ++WVR VA+SDDG LASCGND S+ W + + L +REH HVVESV FA E+ + AT A+ A GS P + + A+ AG G A VRR +F+ SGSRD+TV+LW A G LM F+ HENWVR V HPSG + LSA +D+++R FDV TGRC R L++AH HFVT L + ++VWEC
Sbjct: 230 ELSTGYCVNTLNAGHTDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGQEQVIEKIHSKKLAATGALAPANGSVSPKSNNHDMTASSAGEPTGAVAVASVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMMFASHENWVREVRFHPSGKYALSAGEDKTIRVFDVDTGRCVRTLDEAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 459
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA) HSP 1 Score: 173 bits (439), Expect = 7.360e-46 Identity = 93/228 (40.79%), Postives = 139/228 (60.96%), Query Frame = 1
Query: 7 ATGFCTRTL-KGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAE-----RTLATAVGSAGGSAQPGA------AANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
+TG+CT+TL G ++W+R +AL+DD ++LAS + + + +REH HV+E + F+ + E + ++ V AG + P A + N+ A GV + + R++ SGSRD+TV+LW A G LM F+ HENWVR V HPSG +V+SA++D+SVR FD++TGRC R L DAH HFVT L +H T P+++SGG+D+ ++VWEC
Sbjct: 230 STGYCTKTLVNGHTDWIRDIALTDDSQLLASXXXXXXXXXXXMQTFRPIQTIREHEHVIECITFSKTAVEHRGTEKAVSRKVAPAGLANSPAAMMILANSENRDTAEN-----GVHLDHGKAPKKLRYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8548.16674.1 >prot_E_fasciculatus_S2_contig8548.16674.1 ID=prot_E_fasciculatus_S2_contig8548.16674.1|Name=mRNA_E_fasciculatus_S2_contig8548.16674.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=192bp MLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVback to top mRNA from alignment at E_fasciculatus_S2_contig8548:165..4400+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8548.16674.1 ID=mRNA_E_fasciculatus_S2_contig8548.16674.1|Name=mRNA_E_fasciculatus_S2_contig8548.16674.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8548:165..4400+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8548:165..4400+ >mRNA_E_fasciculatus_S2_contig8548.16674.1 ID=mRNA_E_fasciculatus_S2_contig8548.16674.1|Name=mRNA_E_fasciculatus_S2_contig8548.16674.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8548:165..4400+ (Ectocarpus fasciculatus EfasUO2)back to top |