mRNA_E_fasciculatus_S2_contig8548.16674.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8548.16674.1
Unique NamemRNA_E_fasciculatus_S2_contig8548.16674.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 4.390e-98
Identity = 178/263 (67.68%), Postives = 182/263 (69.20%), Query Frame = 1
Query:    1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR*R---WGHGGGGVETAKAGTLFTLV*---VVFFGVIFVHMSRIQ 771
            +AATGFCTRTLKGDSEWVRRVALSDDG                               VVES+AFAPESAER LATAVGS GG                  GGG      EGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGH VTALAMHKTSPIVVSGGVD ELHVWE       WG  GGG E  +   L   +    VVFFGVIFVHMSRIQ
Sbjct:  230 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVESIAFAPESAERALATAVGSEGG------------------GGG------EGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWELSLTMGTWGGRGGGGERERWARLEHYLHWFWVVFFGVIFVHMSRIQ 468          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 202 bits (514), Expect = 9.520e-57
Identity = 106/222 (47.75%), Postives = 144/222 (64.86%), Query Frame = 1
Query:    1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTA-WGEEGAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            + ATG+C  TL G  S+WVR VA+SDDG  LASCGND S+  W +   + L  +REH HVVESVAFA   A+        +   +A      N   A G G G  V A  G+ GA  RR  F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G +V+S ++DR++R +D++TGRC R L++AH HF+T+  +H + P++V+GG+D+ ++VWEC
Sbjct:  234 ELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQEQAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 193 bits (491), Expect = 1.130e-53
Identity = 98/222 (44.14%), Postives = 142/222 (63.96%), Query Frame = 1
Query:    7 ATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAP-----ESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            +TG+C  T+  G ++WVR + +SDDG  LASCGND ++  W +   + L  LREH HVVESV FA      ++ E+ LA  + S  G       A    ANG       +A    G  + +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G +V+S ++D+++R FD++TGRC R +++AHGHF+T+L +H T P++V+G +D+ ++VWEC
Sbjct:  219 STGYCLHTMSNGHADWVRNITVSDDGLYLASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVG-------APLDAANG-------SAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 189 bits (481), Expect = 7.690e-52
Identity = 102/236 (43.22%), Postives = 146/236 (61.86%), Query Frame = 1
Query:    1 QAATGFCTRTLKGD-SEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESA-----ERTLATAVGSAGGSAQPG---AAANKPR--------ANGAGGGGGVTAWGEEGAVRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            + +TG+C  TL G  S+WVR VA+SDDG  LA+CGND S+ +W +   + L  +REH HVVESV FA   A     E+  A  + +AG     G   A A  P          +       VT      +VRR +F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV  HP G + +SA++D+++R +D++TGRC R L++AH HF+T++ +H T P+++SG +D+ ++VWEC
Sbjct:  236 EISTGYCVNTLNGGHSDWVRDVAVSDDGLYLATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAVVAIGNGEAVARSPEDALTTDMVVD-------VTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Ge1_WD40 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.380e-51
Identity = 105/176 (59.66%), Postives = 106/176 (60.23%), Query Frame = 1
Query:    1 QAATGFCTRTLKGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 528
            +AATGFCTRTLKGDSEWVRRVALSDDG                                 ESVAFAPESAERTLATAVG                                     RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK
Sbjct:  164 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVAFAPESAERTLATAVG-------------------------------------RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 302          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 188 bits (478), Expect = 1.420e-51
Identity = 95/221 (42.99%), Postives = 136/221 (61.54%), Query Frame = 1
Query:    1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRR--FVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            + +TG+C  T+  G ++WVR + +SDDG  LASCGND S+  W +   + L  LREH HVVESV FA   A+             AQ     + P +  A  G G T      A  R+  F+ SGSRD+TV+LW A     LM+FS HENWVRCV  HP G + +S ++DR++R  D++TGRC R ++ AH HF+T+L +H + P++++GG+D+ ++VWEC
Sbjct:  231 EISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKF-----HAQKLVTVSSPSSETALNGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC)

HSP 1 Score: 187 bits (476), Expect = 3.530e-51
Identity = 99/228 (43.42%), Postives = 139/228 (60.96%), Query Frame = 1
Query:    1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTL---------ATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            + +TG+C  TL  G ++WVR VA+S DG  LASCGND S+  W +   + L  +REH HVVESV FA    E+ +         AT   S    +      N+   + AG   GV    +    R + + SGSRD+TV+LW A  G  L+ F+ HENWVR V  HPSG + LSA +D+++R FD+++GRC R L++AH HFVT L +H + P++VSGG+D+ ++VWEC
Sbjct:  230 ELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVTDSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Platelet-activating (factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.090e-51
Identity = 100/226 (44.25%), Postives = 133/226 (58.85%), Query Frame = 1
Query:    1 QAATGFCTRTLKG-DSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTL------ATAVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR 657
            + +TGFC R+L G  ++WVR +A S DG +LAS G+D  V VW++     +  LREH+HVVE+VAF P      +      +T +GS  G A  G  +                   +G+    ++ SGSRDKT+ LWNA  G CL+  + HENWVR V  HPSG F+LS SDDRS+R FD+   RC R L DAH  FV+ALA H T P + +G V+RE+ +WECR
Sbjct:  231 EVSTGFCQRSLVGAHTDWVRCIATSADGALLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQS-------------------QGSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RP37_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.920e-47
Identity = 103/230 (44.78%), Postives = 134/230 (58.26%), Query Frame = 1
Query:    1 QAATGFCTRTLK-GDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTL---------AT-AVGSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRR-RFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            + +TG+C  TL  G ++WVR VA+SDDG  LASCGND S+  W +   + L  +REH HVVESV FA    E+ +         AT A+  A GS  P +  +   A+ AG   G  A      VRR +F+ SGSRD+TV+LW A  G  LM F+ HENWVR V  HPSG + LSA +D+++R FDV TGRC R L++AH HFVT L +               ++VWEC
Sbjct:  230 ELSTGYCVNTLNAGHTDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGQEQVIEKIHSKKLAATGALAPANGSVSPKSNNHDMTASSAGEPTGAVAVASVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMMFASHENWVREVRFHPSGKYALSAGEDKTIRVFDVDTGRCVRTLDEAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 459          
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Match: Lissencephaly-1 (homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA)

HSP 1 Score: 173 bits (439), Expect = 7.360e-46
Identity = 93/228 (40.79%), Postives = 139/228 (60.96%), Query Frame = 1
Query:    7 ATGFCTRTL-KGDSEWVRRVALSDDGEMLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAE-----RTLATAVGSAGGSAQPGA------AANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 654
            +TG+CT+TL  G ++W+R +AL+DD ++LAS           +   + +  +REH HV+E + F+  + E     + ++  V  AG +  P A      + N+  A       GV     +   + R++ SGSRD+TV+LW A  G  LM F+ HENWVR V  HPSG +V+SA++D+SVR FD++TGRC R L DAH HFVT L +H T P+++SGG+D+ ++VWEC
Sbjct:  230 STGYCTKTLVNGHTDWIRDIALTDDSQLLASXXXXXXXXXXXMQTFRPIQTIREHEHVIECITFSKTAVEHRGTEKAVSRKVAPAGLANSPAAMMILANSENRDTAEN-----GVHLDHGKAPKKLRYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8548.16674.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Lissencephaly-14.390e-9867.68homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Lissencephaly-19.520e-5747.75homolog n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.130e-5344.14protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Lissencephaly-17.690e-5243.22homolog n=1 Tax=Globisporangium ultimum (strain AT... [more]
Ge1_WD401.380e-5159.66domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
Lissencephaly-11.420e-5142.99homolog n=2 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Lissencephaly-13.530e-5143.42homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Platelet-activating6.090e-5144.25factor acetylhydrolase ib subunit alpha n=2 Tax=Mo... [more]
Lissencephaly-15.920e-4744.78homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=... [more]
Lissencephaly-17.360e-4640.79homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8548contigE_fasciculatus_S2_contig8548:165..4400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score245.0
Seed ortholog evalue2.9e-62
Seed eggNOG ortholog2880.D7G1C0
Model size1245
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
Exons4
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
Cds size576
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8548.16674.1prot_E_fasciculatus_S2_contig8548.16674.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8548 249..3815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.9944305-UTR-E_fasciculatus_S2_contig8548:164..2481696842512.9944305-UTR-E_fasciculatus_S2_contig8548:164..248Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8548 165..248 +
1696842513.0492275-UTR-E_fasciculatus_S2_contig8548:3815..44001696842513.0492275-UTR-E_fasciculatus_S2_contig8548:3815..4400Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8548 3816..4400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842513.0064054-CDS-E_fasciculatus_S2_contig8548:248..2841696842513.0064054-CDS-E_fasciculatus_S2_contig8548:248..284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8548 249..284 +
1696842513.0148609-CDS-E_fasciculatus_S2_contig8548:719..10251696842513.0148609-CDS-E_fasciculatus_S2_contig8548:719..1025Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8548 720..1025 +
1696842513.0238142-CDS-E_fasciculatus_S2_contig8548:2255..23571696842513.0238142-CDS-E_fasciculatus_S2_contig8548:2255..2357Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8548 2256..2357 +
1696842513.0361717-CDS-E_fasciculatus_S2_contig8548:3683..38151696842513.0361717-CDS-E_fasciculatus_S2_contig8548:3683..3815Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8548 3684..3815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8548.16674.1

>prot_E_fasciculatus_S2_contig8548.16674.1 ID=prot_E_fasciculatus_S2_contig8548.16674.1|Name=mRNA_E_fasciculatus_S2_contig8548.16674.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=192bp
MLASCGNDHSVKVWSVHGGQCLHDLREHTHVVESVAFAPESAERTLATAV
GSAGGSAQPGAAANKPRANGAGGGGGVTAWGEEGAVRRRFVASGSRDKTV
KLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTG
RCARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8548:165..4400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8548.16674.1 ID=mRNA_E_fasciculatus_S2_contig8548.16674.1|Name=mRNA_E_fasciculatus_S2_contig8548.16674.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4236bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8548:165..4400+ (Ectocarpus fasciculatus EfasUO2)
CAGGCGGCAACGGGTTTCTGCACCCGTACACTTAAGGGCGATTCGGAGTG GGTTCGGAGAGTAGCGTTGAGCGATGACGGCGAGATGCTGGCCAGCTGTG GGAACGACCACTCCGTCAAGGTAAGGTCAGACTTGATTTTCTCCGTGTCG CGCCCGGCCTTGGTATTTTCTTCCTTCTGTGCGTATGCGGCGCAAGCCAG GACCTGTTATCGTGAACGTGAAGCACTGACAAGACAGACATCTTTGTTTT TTGGGCGGAAGTTGGTATGATTGACACACTTCAACGTGTACCGATGCATT GTGATGACCCCGGGAACGTGACGAGCTTGGTGCATCCGGCGGTTTCGGAC CAGATTCCGTGACTTGCTCATGCGCGTGGGAACAAATCAAGTACACGCAG CCATACTCTCTCCTTCACTGTCCGCCATGGGAAAGCCTCTCCCTGTACCG ATGAACCCACAAGAGTTTCTTCGATGTACAAGACAGAGGCACACGGCCCT AAGTCGCACGCACTATTGTAAACGTTTTCTTTTGCCTCCCCCCGTTTCGC TTAAGGTATGGAGTGTGCACGGCGGGCAGTGCTTGCATGACTTGCGAGAA CACACCCACGTGGTGGAGAGCGTAGCCTTCGCCCCGGAGAGCGCCGAGCG AACCTTGGCGACAGCGGTGGGGTCGGCAGGGGGGAGTGCGCAACCGGGGG CGGCGGCCAATAAGCCCCGCGCGAACGGCGCGGGGGGGGGGGGGGGGGTT ACGGCGTGGGGGGAGGAAGGAGCTGTGCGGAGGCGGTTCGTGGCGTCCGG GTCGAGAGACAAGACCGTCAAGTTGTGGAACGCTTCCGTGGGACACTGTC TCATGACTTTCGTGAGTGCGATTTTTATCGCTCTTCGCGATACCCTCTTG TGCCATGCCTCTGCGCCCCCTCTTGCTCTGCCTTGCCTGCCCATCCAGGG TTGGGGTTCGCTTAACGCATTTTGCGGTTGGTGTTGTTGTGCGTCGCTAG CGCATGTTCTTGTCGGTGTGCCGGGGGCATGGGCCACGTTTCTTTTCGGA TACTTTTGGGATGCCATAACTTTCCGTCAACGAAGGACGTGCTGTGTGCT GTCACTACTATAATATCAGCTGCTGCTGTTGTCCACTCTCTCGACGCTCT CTTTGCGGTGACGCCCTCTTTCCTCTTTCGTGATGATGGTGCACTACGTC TTACTACGTCTTACTGCAAAGAGACCGGCGTAGTTTGTCCCCGTTCTCTG TGTGCCTCTTTCTCGTTCGTAGTGCACCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCACGTCTTTTTCTTCATTCCTTTCCACCACACCTC CCCACCCATCTCTTTCTCCCCCCTCCCGTTCTCCCCGCGCTATCGGTTGG NNNNNNNNNNGCTTTAACTGCTTTTAGAACAAGGAGACCGGCTTGTTTTG TCCCCTTTTCTTTTGTTCCTCTTTCCCCTTCATAGTCCCCCCCCCCCCCC CCCCCCCGCTGTCGTCATTTGGATTGGCGTTATTTTCATTCAGCGCTACC ATACCACCCTCTTGTGTCGCTTTCCCGAAATGGGCCCTTGAGAGAGCTTT GCTGGAGCCTCGTGTGCCCCCTCGCAGCCCAGCTTCCCGCTCCACGTTTT GTTTTCAACCAAACCCACGCGCTGTGTTTCCACTGCTGTGCCTGACACTT TCGCAAGGCTGCTCCGATGAGACGTTGGGTCTGATGGCTGTTGGTGACCG CCTCCATCCCTCCCTCCCTCCTTCCCGTGCCTTGCCGGGCGAAACAGCCC CGTGTTTCATCTCACAACCGCTCGTGCGGTGTTGTAGGGACTGCGGGTGG GGTGCGTGATTTTTCTCCGTCTCCCGGCCCCTTCTTGACGATTGATTTCC CGCCTGTTTTGGCCCCGCTGGCCTCGACCGTGTCTCGACCCGTTTTGTAA ACCGTCCGCAAAACCACAAGCCTTGACATTTATTTCCTTTATGCTCTTCT TCTTGCCTGCTTTCTTGCGCTCTCCTGGCTTGGTTCCGTATTCTCCGCGC CGTCGACCGGTATGGAATGGGCCGCAAATTAAAATATTTAGAGCGTTCAC GAGAACTGGGTGAGGTGCGTGTTGGTGCACCCCAGCGGAGCGTTTGTCCT CAGCGCCTCGGACGACAGATCTGTGAGGGCGTTCGACGTGAAGGTGAACA TCCTTTTTTTTTTTTTCCCCAACGTTTTGACGTGTGCGACTGGTGCTTCC CCAGCTGCGGTAAGGGTCTCGTCACCGGAATGTGAATGTTTGTGGCATTG AAAGTCGAATTCGGACGTCGAACGCCATTGATTTGGACAACTTGCCGGGC CTGCGGCCACCGGGTTCTGGATACGCGTTTTGTGTTCGGACATTCGGACA TTCTATCGATGTGATTAATTCGAAAGCGCAGACCTATTATTACGTCGAGA ATGCGGAAAAAAAACGCCAACGGGAAGATGAAGCTGTGTCGCCGGTTGTA GCCAGAACCTGTTATACAGCAGTTGTTGTATTGTAGCCGCGTGCCTCTTC ATTTCGTTACCCGTCTAGCCACTGCAGCCCGCTGTAAGCGATGCGCTGGC ATGAGGCTGGCATCCATCAGAGCACAGCAGTGCGAACTTTCGTTGTGCGA AATTTTCCTCTAAATTGAGAGAATGACAGAGGGTCATGGACGTAAACTTT GCCCTCTGTCAGCGGCAGCGTTTGGCATGCCTGTATCAGACCGGAGATGT TTCAATCCCACGTTGTCGCTGAGTTCGCAACGTATCAACGCGAGACCAAG ATCTTCCACCCGCTTTGATCATGGTCGACGTCCGGAACTCTCGTTTTGCG ACGTCTTGGATGCCGTGTGTCTCTGATGTTGATGGTTTAGATCATCGCGA AGGACATTTTTGGCACATTGTTGGGCCTCTTTCGTGTCTAGACTTATAGC TGGTTGCTTTCGATTCCGATTTTCAATGCAATCCCCACGCGCGCAGAAGT CGGAAGTCGGAGCCAACTCGAAAGCTAGAATCGAACTGAAAGAAAGAATT CGTTGTAACGTTCCGGTGACAAGACCAAGACCCACCCTTGACACTTAACA CCGATCGCGCTTATCGCCCGATCAATGTAGAAAGGGCTCGAACCTCGGCC TGAGCGACAGACAGCCCAATTTGCTTCTCGACGGGGTCCGCGGGCATGGG AGGGGGGCAGACGAGCCTTAAGGGGGAGCCGTGTGTGTGTGTGCGCGCGC CTGTGTTTGTCCCCAATCGCTCTCGTGTTGTTCTCCTTGACCTTTTCAAG GGGCGAATAAAGCGGTAAGGGGTGGGTAACCACTTCGCGGACCTGTTGCG CTTGGAGCTGTGCGAACTTGGTCGAGACATTAAGCCGACCCCCTCCCGAC TTTCTTTAGCGCCAGGCGTGTGTTCGGCATGAATGATCCTGCTCGACGCA CCACCTCATGTTTCGTTCCCTTCCCCCCCCGCTCTTGCCTCCTGATGGAT TTTCTTGGTGTCCGAACAGACGGGGAGGTGCGCGCGAAAGTTGGAGGACG CGCACGGGCACTTCGTAACAGCGCTGGCGATGCACAAGACGTCCCCTATC GTGGTATCCGGGGGCGTAGATCGGGAGTTGCACGTTTGGGAATGTCGCTG ACGATGGGGACATGGGGGGGGGGGGGTTGAGACGGCCAAGGCTGGAACAC TATTTACATTGGTTTGAGTCGTATTTTTCGGCGTTATTTTTGTGCACATG TCTAGAATCCAGTGACCCGAACGTTTTTCGTATGTAGTGATGTCTACCAT AGTCTAATATTGTTATTTTTTTTGTTTGAGCGTGATTTCTGTTGGGCTTT GGACAAGGAACACAAGGAACAACAACGGTGCGCTCTCGCATACACGGGCT ACGCTGCTTTGTCCCTTCCCCCGCACCCCCGGCTCCCCTTGGTTCGAATG GTCATTTCCAAGAGTGAGCCGGGTCATCTGCTATGAGTAACGGCAGGGTG CAACTGCTGTGAGTGACAGTTGGTGGGCGGTGTGACATATTTATTTTTTT CGTGATTTGATTTTTTTATGAAGCTCTCAGGTGGTGGGCGATGTACGCAC TACATGACACAAGAACTGCCTGAAACAACAGGCAGTACACCCGTGCAGTG TTTGAAGAATTTGCGAACTGGATCCTTGATATTTGGAGTCGTCGGTCCGT GTAGGCTTTTATTTTTTTGCACGGAGTAGAGCGGTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8548:165..4400+

>mRNA_E_fasciculatus_S2_contig8548.16674.1 ID=mRNA_E_fasciculatus_S2_contig8548.16674.1|Name=mRNA_E_fasciculatus_S2_contig8548.16674.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8548:165..4400+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGGCCAGCTGTGGGAACGACCACTCCGTCAAGGTATGGAGTGTGCA
CGGCGGGCAGTGCTTGCATGACTTGCGAGAACACACCCACGTGGTGGAGA
GCGTAGCCTTCGCCCCGGAGAGCGCCGAGCGAACCTTGGCGACAGCGGTG
GGGTCGGCAGGGGGGAGTGCGCAACCGGGGGCGGCGGCCAATAAGCCCCG
CGCGAACGGCGCGGGGGGGGGGGGGGGGGTTACGGCGTGGGGGGAGGAAG
GAGCTGTGCGGAGGCGGTTCGTGGCGTCCGGGTCGAGAGACAAGACCGTC
AAGTTGTGGAACGCTTCCGTGGGACACTGTCTCATGACTTTCAGCGTTCA
CGAGAACTGGGTGAGGTGCGTGTTGGTGCACCCCAGCGGAGCGTTTGTCC
TCAGCGCCTCGGACGACAGATCTGTGAGGGCGTTCGACGTGAAGACGGGG
AGGTGCGCGCGAAAGTTGGAGGACGCGCACGGGCACTTCGTAACAGCGCT
GGCGATGCACAAGACGTCCCCTATCGTGGTATCCGGGGGCGTAGATCGGG
AGTTGCACGTTTGGGAATGTCGCTGA
back to top