mRNA_E_fasciculatus_S2_contig8522.16658.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8522.16658.1
Unique NamemRNA_E_fasciculatus_S2_contig8522.16658.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8522.16658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 480 bits (1236), Expect = 5.150e-152
Identity = 329/432 (76.16%), Postives = 338/432 (78.24%), Query Frame = 1 
Query:  379 RLGFAAEVPRLAGGQIKTRCWKGGPTSSSEVQ-RSGLFEWGVVATSTSWRLGSSSXXXXXXXXDTTPSNPDTWRNRSERPPAVSSDTDGSSGAVXXXXXXXXXAYSALCPALHGADYGWSFPAGAEPPPTQXXXXXXXXXXXRIPPVGRRRGATEAERKAPGRGMALAADATGVXXXXDSPAGAHAATAVLTVEGDGPEELSGRRAXXXXXXXXXXXXXXGRAGAATGAFGGVRFDAAASAERSSSGGDLTAGAGRVDPDEVRRATVNTGGGRSXXXXXXXXXXXXXXXXXXXXXXXX----RPRGGGVATFESAEDKALRQMLLEATKSGRGGVALRALRLMVEENLLVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLARGLRSVGQADQALAVLRQALRAGVGGIDEQVCTL 1659
            RLGFAAEVPRLAGGQIKTR WK   +SSSEVQ R GL EWGVVATSTSWRLGSS+ XXXXXXX T  SN DTWR+RSERPPAVSSD DGS  A  XXXXXXXXAYSALCPALHG    W FP   EPP   XXX        R PPVGRR  A E E K PGRG AL ADATGV    DS  GA AATAVLTVEGDG EELSGRR               GRAGAATGAFGGVRFD AASAE  S G  +T GAGRVDP E  RA V+TGGGRS    XXXXXXXXXXXXXXXXXX      R RGGG ATFESAED+ALRQ+LLEATKSGRGGVALRALRLMVEENL VSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLARGLRS GQADQAL VLRQALRAGVGGIDEQVC++
Sbjct:  131 RLGFAAEVPRLAGGQIKTRWWKVSASSSSEVQQRRGLSEWGVVATSTSWRLGSSTTXXXXXXXXTPSSNADTWRHRSERPPAVSSDADGSGAADTXXXXXXXXAYSALCPALHG----WPFPEVVEPP-XXXXXVGRERERERPPPVGRRPSAAEVEAKVPGRGTALTADATGVASAADSH-GARAATAVLTVEGDGQEELSGRRVAAPGVAAAPRPPP-GRAGAATGAFGGVRFDVAASAEGGSGG--VTGGAGRVDPGEGGRAAVSTGGGRSGDSGXXXXXXXXXXXXXXXXXXKRATRKRLRGGGAATFESAEDRALRQLLLEATKSGRGGVALRALRLMVEENLSVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLARGLRSAGQADQALVVLRQALRAGVGGIDEQVCSI 553
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BLAST of mRNA_E_fasciculatus_S2_contig8522.16658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.640e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1 
Query: 1390 MVEENLLVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLARGLRSVGQADQALAVLRQALRAGVGGIDEQVCTL 1659
            MVEENL VSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLARGLRSVGQADQAL VLRQALRAGVGGIDEQVC++
Sbjct:    1 MVEENLSVSQKQYVGAMEACMRQGSWTSGLEVFRLLLEDLRPRGLSPKQSTWRSLARGLRSVGQADQALVVLRQALRAGVGGIDEQVCSI 90
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8522.16658.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.150e-15276.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.640e-4195.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8522contigE_fasciculatus_S2_contig8522:2250..6572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score170.2
Seed ortholog evalue2.6e-39
Seed eggNOG ortholog2880.D8LBV9
Model size1659
Hectar predicted targeting categorychloroplast
Exons5
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size1659
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842511.60695-CDS-E_fasciculatus_S2_contig8522:2249..22751696842511.60695-CDS-E_fasciculatus_S2_contig8522:2249..2275Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8522 2250..2275 +
1696842511.6298409-CDS-E_fasciculatus_S2_contig8522:3370..47361696842511.6298409-CDS-E_fasciculatus_S2_contig8522:3370..4736Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8522 3371..4736 +
1696842511.6442823-CDS-E_fasciculatus_S2_contig8522:5465..55311696842511.6442823-CDS-E_fasciculatus_S2_contig8522:5465..5531Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8522 5466..5531 +
1696842511.657693-CDS-E_fasciculatus_S2_contig8522:5735..58361696842511.657693-CDS-E_fasciculatus_S2_contig8522:5735..5836Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8522 5736..5836 +
1696842511.6677368-CDS-E_fasciculatus_S2_contig8522:6472..65721696842511.6677368-CDS-E_fasciculatus_S2_contig8522:6472..6572Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8522 6473..6572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8522.16658.1prot_E_fasciculatus_S2_contig8522.16658.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8522 2250..6572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8522.16658.1

>prot_E_fasciculatus_S2_contig8522.16658.1 ID=prot_E_fasciculatus_S2_contig8522.16658.1|Name=mRNA_E_fasciculatus_S2_contig8522.16658.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=553bp
MADSSRRRRRMPHPTVVPAFVVLASTAAATTTAASGGPAAVAPPPRRLTA
AFTSSTSGNRSSTPERRRDGRGRAGDGDGLGLGFESNTAGVMRTRGHPPG
TAAAGRRRRSLALLSSRLGSSSGSSSRLGFAAEVPRLAGGQIKTRCWKGG
PTSSSEVQRSGLFEWGVVATSTSWRLGSSSTTKRAGGNDTTPSNPDTWRN
RSERPPAVSSDTDGSSGAVTAAAAAAAAAYSALCPALHGADYGWSFPAGA
EPPPTQQQQEGRERERERIPPVGRRRGATEAERKAPGRGMALAADATGVA
AAADSPAGAHAATAVLTVEGDGPEELSGRRAAAPGAAPPPPPPPPGRAGA
ATGAFGGVRFDAAASAERSSSGGDLTAGAGRVDPDEVRRATVNTGGGRSG
GSGSGGGGTGGGGSGGRKRAARKRPRGGGVATFESAEDKALRQMLLEATK
SGRGGVALRALRLMVEENLLVSQKQYVGAMEACMRQGSWTSGLEVFRLLL
EDLRPRGLSPKQSTWRSLARGLRSVGQADQALAVLRQALRAGVGGIDEQV
CTL
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mRNA from alignment at E_fasciculatus_S2_contig8522:2250..6572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8522.16658.1 ID=mRNA_E_fasciculatus_S2_contig8522.16658.1|Name=mRNA_E_fasciculatus_S2_contig8522.16658.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4323bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8522:2250..6572+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGACAGCTCGCGACGAAGAAGGTGAGAACCGATTGGTCGGGGCGA
GGGGGCAGTTGGCCAGCATCCTTCTTGTTGGTTGTACCTCGCACATGATT
ACTGCTACTACTAATACTTCAAGTCTGAATGTGACTGGGTCAGAGCCAAG
TTCTGATGCAGAATCTCTGCATCATGTGTCGTGGAGTCTACAGCCTACTG
CTGGGTACGTACCGCGTCATGCACCGCGCTTTCGAGCATGGCTAACCCCT
TCGTTTGTACTACCCGCTCCCCTGTCCTCATTTGCTGCGAATGCACTTAC
TCATGCAGAGTGGTCTGCTGGGGAAGGCCCATAGGGTAACTGCCAGATAG
ACCTACTGGCTGTTGTAAGGATGTGATGAATCATCCAACTGCTTTTTGTC
AAGCACAGTAGTCCAGCTATTATAGCAGTCTACTGCATGTTATGCTGAGT
AGACTACCTGCAACGAGTACTGTACACATGTGACCTGCGTATACATGTAG
AGGTGCAGAGGTTCAATCAAGGTAGCAGCGGGATTGGTTGTACAAGTGAG
CCATTTCTTATCTCAGGGGAACGAACATATCGTCTCTTTCTACATTACCA
GCTGCCAATGTACTCCCTGATGTTCACATTTACAGCAGTAGTCATCTGCG
AACAATGTGTCCGCAGTACACAGATGTGTGTTACCCTCCATCAGAATGAC
GACAAGTATTGAAACAGGCGATGCATCCTCGAGTGTTGCCCTTCAAAATG
GGCTTCGTGCAGGAGTCGGGGGAACGCCATCGGGATACTAGACACTAAAC
AATGTTGGCAGTTTTTACTCTCTCAAGCATCTCTGTGAATTACATCAATC
ATTGTCACGTCGCAAGTGTCCCACCTATATCTGCATCGCTACCTGTATCC
GAGCTACACTTGAAAAGGTGAACTTTCCTCCCCCCCCCCCCCCCCCCCCC
CCCCCCCACCCCCCTCGCACACAACGGAGCCGCGAGCGCCCTCGGCGTCT
GGTGCCTGACGCNNNNNNNNNNCCTTCGCAGTTTCCCACCTATTTCTGCA
TCCCCTCCTGTTTCCCAGCTACACTTTAAAAGGTGAACTTTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCAGACGAATGCCGCACCCAACGGTAGTGCCGG
CCTTTGTGGTGTTGGCGTCCACCGCCGCGGCCACAACGACGGCCGCCTCC
GGCGGGCCGGCGGCGGTGGCGCCGCCGCCTCGCCGCCTCACGGCTGCTTT
CACCTCCTCCACCAGCGGGAACCGAAGCAGCACTCCGGAGAGAAGGCGCG
ACGGACGAGGAAGAGCTGGCGATGGTGATGGCCTAGGGCTAGGTTTCGAA
AGCAACACGGCGGGCGTGATGCGGACCCGTGGCCACCCCCCGGGTACTGC
CGCCGCCGGGCGGCGGCGGCGCTCGTTGGCGCTCTTGTCTTCCCGGCTTG
GCAGCAGCAGCGGCAGCAGCAGCAGGCTAGGCTTTGCGGCAGAGGTGCCC
CGATTAGCGGGGGGACAGATCAAGACCAGGTGCTGGAAGGGCGGGCCAAC
CTCCTCGAGCGAGGTGCAACGGAGCGGCTTGTTCGAGTGGGGCGTGGTCG
CGACGTCGACCTCATGGCGGCTTGGCAGCAGCAGCACGACCAAACGGGCG
GGGGGCAACGACACGACCCCGTCCAATCCGGACACCTGGAGAAATCGATC
CGAACGTCCGCCCGCCGTATCGAGCGATACCGATGGTAGTAGTGGCGCGG
TGACGGCGGCGGCGGCGGCAGCGGCAGCGGCGTATTCGGCGCTGTGTCCG
GCGCTCCACGGTGCAGACTATGGTTGGTCCTTTCCGGCGGGTGCAGAACC
ACCCCCCACACAGCAGCAGCAGGAAGGACGAGAGCGGGAGCGGGAGCGGA
TCCCCCCGGTGGGCAGAAGACGCGGCGCTACCGAGGCAGAGAGGAAAGCG
CCAGGAAGAGGAATGGCTCTGGCGGCCGACGCCACCGGCGTTGCTGCCGC
CGCTGATTCCCCCGCCGGTGCGCATGCCGCCACCGCGGTGTTGACCGTGG
AAGGAGACGGGCCAGAGGAACTGTCCGGCCGCAGGGCAGCGGCGCCTGGG
GCGGCGCCGCCGCCGCCGCCGCCGCCTCCCGGCCGCGCTGGTGCGGCGAC
TGGCGCGTTCGGCGGGGTTCGTTTCGACGCCGCGGCAAGCGCGGAGCGCA
GCAGCAGCGGTGGTGATTTGACGGCCGGTGCCGGTAGGGTCGACCCAGAC
GAAGTCAGGAGGGCTACGGTCAACACCGGCGGCGGCCGCAGCGGCGGTAG
CGGTAGCGGCGGCGGTGGTACCGGTGGCGGTGGTAGCGGCGGCCGTAAGA
GGGCGGCAAGAAAGAGGCCGAGGGGCGGTGGCGTGGCTACCTTTGAATCA
GCGGAAGATAAAGCTCTGAGGCAGATGTTGCTGGAGGCGACCAAGAGCGG
GAGAGGGGGTGTCGCGCTACGGGCGCTGCGGCTAATGGTGAGAGTCGGTT
TTTTTGTTGGTCTCCTTTTTACAAATGGTACCCAAATAGACGCGAAACGT
CTTCGACCGGTCCCCCCCCGAATGGAAGCTTAAGCGGTTTCTTTTAGAGC
GGACCGTAAGCATGATTCGAGCCGGGCTGGTAGAAAAATGCTTTCACCTA
TTAGGACCAATACCGAGAACGGGGATTGGCCGACTTCGTTTATGCCGATG
TTGTTGAGTTTTTTTTTCCGTTTGGGTCCCCTATTGGATGGCGTCTTAGG
CGTGTACCTAGAAACATATCCTGCTCCTTTGCTCCTTAGACGAACCACGT
GTTCGGCAACAGCGTCCAGCTACAAGTAGGGTTAGGGTGAAGGGTTTTCG
GGTTAGGCTACAAGTATCATGAGTGGTGCAAAAGACGCTTGCGGGCTACC
GAGAGTGCGTCCGCGGCGGAAAATTGTGTGTTTGTGCTTTTTCGTCGGAA
GACGATCGGGGCTATCGCTCGTGCCATGGGAGGGGTCGTTGCCACACACG
GGGCTAGCTTCTAGTGGTGCGCGCCAAGGAGGCTTGTACGAGGACCATTC
CTCGGTGCAGATTTCGCGTCGATGATGCCGTCGTCGTTTTTCTTGGCTCA
TTATCCTCCTGCGTATCCCGTCTGACCTGTACCTTCTTTTGTCCCCTTGA
TGTGGCGACTGACGGCGATGATACGGCGATGATTCGTCCGTTTTTTTTTT
TTTCATTTGTTTCCAGGTGGAGGAAAACCTTTTGGTGAGCCAAAAGCAGT
ACGTCGGCGCGATGGAGGCGTGCATGCGACAGGTGAGAAGCGAGCGAGAG
AGAATGAGGGGAAGAGAGAGGGGGGGCACCGTGAAATGGGGGGAAATTGC
TAAATAAACATTTGGAGAGAGAGCATGCTGCCGTGTACGGGTCGTGTTTT
TCCTACGCGTACGCCCCCGAACGAGGCCCAAAATGAAATTGTGTCAATTT
TTTGTTAACCTTGTTGACCTTCGAAATATATCTCAGGGCTCTTGGACGTC
CGGCCTTGAGGTGTTCCGGCTTCTCCTCGAGGACCTTCGGCCGAGGGGGC
TCAGCCCCAAGCAGTCCACCTGGAGGTCACTTGCGAGGTAAAGGCGTCCC
GTATAGACCGCCAAGATAGGCACAGAAGCAAGCTTGCAATGTCTTCTGTG
CGGTCTTGCCATGTCGTTCTCGCGTGCGTCACGTTAGGACTGACGTGTGT
CGCTGTTGGATAATACGACGCTTACCGCTCGTGGCGTTAGGTCACTGCCC
GTTCTTGGAGCCGTTTTTGGAATCCCGGAGCAGTCCGCCCAGTGTTTCGC
TTCGCGTGTCCGCGGACAACTTCCTATCTGTACATTGAGCGTGCGTGCTG
CTGCTGTCGTTCGAGCTCCGAGATCTTGTCTGTCTTGCTGTTGTTTTACG
TGCGGAACGCTTCGCTTCTCACGTTTTTGCTGTCGCTGTCTGTTGTTGTA
CAGTACAGTATGCATACCAGTTTTAGCAGTGTCATTTATCGTTTACGCGT
GCGATAGGGCGTGGCGGGCGTGGTTGTTGATGTCGCGCCACCCTGTGGAA
TGTCTTGATACGATTGTGGTTCTTGTCTCGCCCCCGTCATCTGGGGGGCT
CCGTGTCTTTGCTCCCCCCGTACGTTCTTTGGGACCTACCCTCCTGCTTT
GCCTACGTCCCTGAACACTGAAAGTCAGTCTTGTTTTTTTTTTTTTTGTC
GCGCTTTTTTTTTTTTTTCTCAGAGGCCTTCGCTCCGTCGGGCAGGCCGA
CCAGGCGTTGGCCGTCTTGCGCCAGGCGCTTAGGGCTGGCGTGGGGGGCA
TCGACGAGCAGGTATGTACATTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8522:2250..6572+

>mRNA_E_fasciculatus_S2_contig8522.16658.1 ID=mRNA_E_fasciculatus_S2_contig8522.16658.1|Name=mRNA_E_fasciculatus_S2_contig8522.16658.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1659bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8522:2250..6572+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCGACAGCTCGCGACGAAGAAGACGAATGCCGCACCCAACGGTAGT
GCCGGCCTTTGTGGTGTTGGCGTCCACCGCCGCGGCCACAACGACGGCCG
CCTCCGGCGGGCCGGCGGCGGTGGCGCCGCCGCCTCGCCGCCTCACGGCT
GCTTTCACCTCCTCCACCAGCGGGAACCGAAGCAGCACTCCGGAGAGAAG
GCGCGACGGACGAGGAAGAGCTGGCGATGGTGATGGCCTAGGGCTAGGTT
TCGAAAGCAACACGGCGGGCGTGATGCGGACCCGTGGCCACCCCCCGGGT
ACTGCCGCCGCCGGGCGGCGGCGGCGCTCGTTGGCGCTCTTGTCTTCCCG
GCTTGGCAGCAGCAGCGGCAGCAGCAGCAGGCTAGGCTTTGCGGCAGAGG
TGCCCCGATTAGCGGGGGGACAGATCAAGACCAGGTGCTGGAAGGGCGGG
CCAACCTCCTCGAGCGAGGTGCAACGGAGCGGCTTGTTCGAGTGGGGCGT
GGTCGCGACGTCGACCTCATGGCGGCTTGGCAGCAGCAGCACGACCAAAC
GGGCGGGGGGCAACGACACGACCCCGTCCAATCCGGACACCTGGAGAAAT
CGATCCGAACGTCCGCCCGCCGTATCGAGCGATACCGATGGTAGTAGTGG
CGCGGTGACGGCGGCGGCGGCGGCAGCGGCAGCGGCGTATTCGGCGCTGT
GTCCGGCGCTCCACGGTGCAGACTATGGTTGGTCCTTTCCGGCGGGTGCA
GAACCACCCCCCACACAGCAGCAGCAGGAAGGACGAGAGCGGGAGCGGGA
GCGGATCCCCCCGGTGGGCAGAAGACGCGGCGCTACCGAGGCAGAGAGGA
AAGCGCCAGGAAGAGGAATGGCTCTGGCGGCCGACGCCACCGGCGTTGCT
GCCGCCGCTGATTCCCCCGCCGGTGCGCATGCCGCCACCGCGGTGTTGAC
CGTGGAAGGAGACGGGCCAGAGGAACTGTCCGGCCGCAGGGCAGCGGCGC
CTGGGGCGGCGCCGCCGCCGCCGCCGCCGCCTCCCGGCCGCGCTGGTGCG
GCGACTGGCGCGTTCGGCGGGGTTCGTTTCGACGCCGCGGCAAGCGCGGA
GCGCAGCAGCAGCGGTGGTGATTTGACGGCCGGTGCCGGTAGGGTCGACC
CAGACGAAGTCAGGAGGGCTACGGTCAACACCGGCGGCGGCCGCAGCGGC
GGTAGCGGTAGCGGCGGCGGTGGTACCGGTGGCGGTGGTAGCGGCGGCCG
TAAGAGGGCGGCAAGAAAGAGGCCGAGGGGCGGTGGCGTGGCTACCTTTG
AATCAGCGGAAGATAAAGCTCTGAGGCAGATGTTGCTGGAGGCGACCAAG
AGCGGGAGAGGGGGTGTCGCGCTACGGGCGCTGCGGCTAATGGTGGAGGA
AAACCTTTTGGTGAGCCAAAAGCAGTACGTCGGCGCGATGGAGGCGTGCA
TGCGACAGGGCTCTTGGACGTCCGGCCTTGAGGTGTTCCGGCTTCTCCTC
GAGGACCTTCGGCCGAGGGGGCTCAGCCCCAAGCAGTCCACCTGGAGGTC
ACTTGCGAGAGGCCTTCGCTCCGTCGGGCAGGCCGACCAGGCGTTGGCCG
TCTTGCGCCAGGCGCTTAGGGCTGGCGTGGGGGGCATCGACGAGCAGGTA
TGTACATTG
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