mRNA_E_fasciculatus_S2_contig85.16631.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig85.16631.1
Unique NamemRNA_E_fasciculatus_S2_contig85.16631.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Thioesterase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF1_9PHAE)

HSP 1 Score: 507 bits (1306), Expect = 1.200e-178
Identity = 247/262 (94.27%), Postives = 253/262 (96.56%), Query Frame = 1
Query:    1 MSSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQAVLTFLGDVLTEKL 786
            MSSSALEKWVVCRRVK DASIRL CAAWAGGSASSFNKWTSK+PEAVELHALE PGRMRRSKEDSLTSV AIVEGVAQALV MGLLDKPFALFGHSFGSLVMFELARKLKED GKIPVYL+VSGC PPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTA+EGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLE WSSLTA EFRL+MFGGGHFFLQG+GEQAVLTFLG+VLTEKL
Sbjct:    1 MSSSALEKWVVCRRVKADASIRLFCAAWAGGSASSFNKWTSKMPEAVELHALEFPGRMRRSKEDSLTSVSAIVEGVAQALVTMGLLDKPFALFGHSFGSLVMFELARKLKEDAGKIPVYLVVSGCCPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAYEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLELWSSLTAGEFRLQMFGGGHFFLQGEGEQAVLTFLGNVLTEKL 262          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Gramicidin (dehydrogenase n=1 Tax=Hapalosiphon sp. MRB220 TaxID=1704290 RepID=A0A0M0SMK7_9CYAN)

HSP 1 Score: 187 bits (475), Expect = 2.760e-53
Identity = 105/261 (40.23%), Postives = 143/261 (54.79%), Query Frame = 1
Query:    4 SSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQAVLTFLGDVLTEKL 786
            ++S L+ W VC +  P+A IRL C  +AGGSA+ F  W++ LP  VE+ A+ELPGR  R K    T +  +V  +A  L     LDKPFA FGHS G LV FELAR L++  G IP +L VS  R P +       PPI +LP    ++ L  L G PE L +  EL+  F+P IRAD+   E Y Y P+      P+ CPI   GG +D       ++ W   T+A F L M  G HFFL      +  +FL +++ +K+
Sbjct:    3 NTSNLDSWFVCYKPNPEAKIRLFCFPYAGGSANIFRSWSNDLPPTVEICAIELPGRGMRIKLPLFTQLEPLVTELASVLKPN--LDKPFAFFGHSMGGLVSFELARLLRKQYGVIPSHLFVSARRAPQLV---SNKPPIHRLPDAEFLEELRHLNGTPEALLENDELMQLFMPIIRADFAVLENYIYTPQ-----TPLDCPITAFGGLQDQEVNHDQIKAWEEQTSAYFSLHMLPGNHFFLH-----SFQSFLLNIIYKKI 248          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Surfactin (synthase thioesterase subunit n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A326U590_9CHLR)

HSP 1 Score: 185 bits (470), Expect = 1.660e-52
Identity = 90/240 (37.50%), Postives = 137/240 (57.08%), Query Frame = 1
Query:   25 WVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQ 744
            W++C +    A +RL+C  +AGG AS++  W  +LP+ +EL A++LPG   R KE + T +P++VE +A+AL+ +  LD+PFA+FGHS G+L+ FEL R L++   + P +L +SGCR   +       P +  L  + L+D+L    G PEE+    E++   LP  RAD+T +E Y+Y+        P++CPI   GG +D       L+ W   T   F   M  G HFFLQ   +Q
Sbjct:   10 WLICPQTAQQARLRLLCLPYAGGGASAYRSWQQQLPDTIELCAVQLPGHETRLKEQAYTHLPSLVEAMAEALLPV--LDRPFAIFGHSMGALLSFELTRYLRKHAQRSPEHLFLSGCRAAHL---PRTEPDVHTLSDEGLIDYLRRFNGTPEEILQNEEMMQLLLPIFRADFTLYETYQYQ-----HEEPLSCPITVFGGHQDSSVSYQQLQAWRDHTRGAFAAHMLPGNHFFLQPSRDQ 239          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Thioesterase (n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1A9W5_9CYAN)

HSP 1 Score: 184 bits (468), Expect = 3.200e-52
Identity = 97/241 (40.25%), Postives = 136/241 (56.43%), Query Frame = 1
Query:    4 SSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFL 726
            ++S    WV C +  P A +RL C  +AGGSA SF  W  +LP  +E+  +ELPGR  R  E   T +  +++ + +A++    L+KPFA FGHS G+++ FELA+ L ++    PV L VSG RPP +       PP+  LP    +  L    G PEE+ +  EL++ FLP +RAD+   E Y Y P+P      + CPI   GG +D  A  SDL+ W  LT A+F L MF G HFF+
Sbjct:    3 TTSTFNNWVTCPKPNPQAKLRLFCFHYAGGSALSFRTWADRLPNYIEVCPVELPGRGIRLMEPPFTRLQPLLQALEKAILPS--LNKPFAFFGHSMGAVLSFELAQLLAKNHHLSPVQLFVSGRRPPQI---PDPDPPLHNLPEATFLKELRRYNGTPEEVLNNAELMELFLPTLRADFAVLETYVYTPKPR-----LNCPISAFGGWDDWKASASDLQAWEELTNADFSLEMFPGDHFFI 233          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Oleoyl-(Acyl-carrier-protein) (hydrolase n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VZS4_9CYAN)

HSP 1 Score: 184 bits (467), Expect = 4.490e-52
Identity = 97/258 (37.60%), Postives = 144/258 (55.81%), Query Frame = 1
Query:    4 SSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQAVLTFLGDVLT 777
            S S +  WV   +  P A++RL C  +AGGS+  F  W + LP+++E+  +ELPGR  R  E   T +  +VE +A +++    LDKPFA FGHS G+++ FEL R +    G +PV+L+++G   P +     R PPI  LP  A +  L    GMP+++ + TEL++ FLP IRAD+   E Y Y   P     P++CPI   GG +D     ++LE W + T   F L +  G HFF+Q   +  +L  +  VLT
Sbjct:    5 SKSTIGAWVTFPQPNPQANLRLFCFPYAGGSSVIFRTWANNLPKSIEVCPIELPGRGSRFIETPFTRLDLLVEAIAPSILPY--LDKPFAFFGHSMGAVISFELTRLINRKYGLLPVHLLIAGRHAPQL---SDRHPPIHTLPEPAFIQGLCRYNGMPKQVLENTELMEVFLPIIRADFAICETYNYTNDP-----PLSCPITAFGGLQDSETSVAELEAWRNQTNNSFSLHLLPGDHFFIQSD-QLLLLQLISQVLT 251          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Putative (thioesterase n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QPU9_9CYAN)

HSP 1 Score: 184 bits (467), Expect = 4.490e-52
Identity = 104/261 (39.85%), Postives = 139/261 (53.26%), Query Frame = 1
Query:    7 SSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQAVLTFLGDVLTEKLS 789
            SS  + W+   +  P A +RL C  +AGG A SF  W+  LP  VE+  +ELPGR  R  E   T +  ++E +A ALV      KPFA  GHS G+LV FELAR L+    ++P+YL++SG R P +       PP+  LP   L+  L    G PE +    EL+   LP +RAD++  E YRY+P P     P+ CPI   GG +D      DLE W   T   F L+MF G HFFL    +  VL  + D+L + LS
Sbjct:    2 SSQSKSWITYPQPNPRAKLRLFCFHYAGGGAVSFRNWSDALPSEVEVCPIELPGRGARLFEQPFTQLQPLIEALAVALVPH--CTKPFAFLGHSMGALVGFELARSLRRKGDRLPLYLLLSGHRAPQL---PDLDPPLHALPDAELLQELRRYNGTPEAVLQNAELMQLLLPTLRADFSVVETYRYQPEP-----PLDCPIFAFGGLQDWKVKPEDLEPWQQQTTQAFTLQMFPGDHFFLHAH-QSLVLRKVSDLLQQVLS 251          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Putative (thioesterase n=1 Tax=Leptolyngbya boryana NIES-2135 TaxID=1973484 RepID=A0A1Z4JSL1_LEPBY)

HSP 1 Score: 183 bits (465), Expect = 8.890e-52
Identity = 98/234 (41.88%), Postives = 137/234 (58.55%), Query Frame = 1
Query:   25 WVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFL 726
            W++  +  P A +RL C  +AGGSAS F  W+ +LP+ +E+ A+ELPGR    +    T +  +VE +AQ+L+    L++PFALFGHS G+L+ FELAR L++  G  P +L VSG   P +     R PPI  LP  A +  L  L G PE +    EL+    P +RAD+ A + YRY+P P      + CPI  LGG +D    R DLE W + T A F++++F G HFFL
Sbjct:    5 WIIRSKPNPQARLRLFCFPYAGGSASIFRSWSDQLPQNIEVCAVELPGRGTLMRLAPYTQLKPLVEAIAQSLLPN--LNQPFALFGHSMGALISFELARFLRQAYGLTPRHLFVSGRAAPYI---PDRDPPIYTLPDAAFIQELRRLNGTPEAVLQNQELMQLLTPILRADFAAIDTYRYQPEPA-----LGCPITALGGLQDLEVSRDDLEAWQTQTIAPFQIQLFLGNHFFL 228          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: thioesterase (II family protein n=1 Tax=Fischerella sp. PCC 9605 TaxID=1173024 RepID=UPI00047E576A)

HSP 1 Score: 182 bits (462), Expect = 2.550e-51
Identity = 96/241 (39.83%), Postives = 134/241 (55.60%), Query Frame = 1
Query:    4 SSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFL 726
            ++S    WV+C +  P+A IRL C  +AGGS++ F +W+  LP  VE+ A+ELPGR  + K      +  +VE +A  L +   LDKPFA FGHS G L+ FELA  L++    +P +L VSG R P +     + PPI  LP    ++ L  L G P+ L +  EL+  FLP +RAD+   E Y Y  +P     P+ CPI   GG +D    R +++ W   T+A F L M  G HFFL
Sbjct:    3 NTSNFNSWVICPKPNPNAKIRLFCFPYAGGSSNIFRRWSDNLPGTVEVCAIELPGRGMQMKLSPFNRLEPLVEELASVLKSN--LDKPFAFFGHSMGGLISFELACLLRKQYDMVPNHLYVSGRRAPQIA---DQKPPIYALPEAEFIEELRRLNGTPQALLENDELMQLFLPILRADFAVLETYVYTQKP-----PLDCPITAFGGLQDQEVSRENIQAWQEQTSASFSLHMLPGDHFFL 233          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: Thioesterase (n=3 Tax=Nostocales TaxID=1161 RepID=A0A1Z4J274_9CYAN)

HSP 1 Score: 182 bits (461), Expect = 3.580e-51
Identity = 99/242 (40.91%), Postives = 132/242 (54.55%), Query Frame = 1
Query:    1 MSSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFL 726
            M+S+ +  WV C +  P AS+RL C  +AGGS+  F  W+  LP  VE+  +ELPGR  + K  + T +  +V+ +A  L+    LDKPFA FGHS G LV FEL R L+++   IP +L VSG R P +       PPI  LP     + L  L G PE +    EL+   +P +RAD+   E Y Y   P     P+ CPI   GG ED  A   +L+ W + T A F L+MF G HFFL
Sbjct:    1 MTSARIHSWVTCPQPNPQASLRLFCFPYAGGSSVIFRTWSRSLPTTVEVCPIELPGRGTQMKLPAFTQLQPLVQAIAPVLLPH--LDKPFAFFGHSMGGLVSFELVRLLRKEYNIIPDHLFVSGRRAPQI---PDPKPPIHALPEPEFKEELRRLNGTPEAVLQNAELMQLLVPILRADFAVLETYVYTTEP-----PLNCPISAYGGSEDEEASYDELQAWQNQTNAAFSLQMFTGDHFFL 232          
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Match: thioesterase (II family protein n=1 Tax=Nostoc sp. LEGE 06077 TaxID=915325 RepID=UPI00188060A4)

HSP 1 Score: 181 bits (458), Expect = 1.290e-50
Identity = 100/266 (37.59%), Postives = 141/266 (53.01%), Query Frame = 1
Query:   10 SALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELHALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSLVMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQAVLTFLGDVLTEKLS*RVALK 807
            S+   W++C +  P A++RL C  +AGGS+  F +W+  LP +VE+  +ELPGR R+ K     ++ A+V+ +A  +     LDKPFA FGHS G L  FEL R L++    +PV+L +SG R P +       PPI  LP  A ++ L  L G P  + +  EL+  FLP +RAD+   E Y Y P P     P+ CPI   GG +D      +L+ W   T   F L MF G HFFL    +  +LT L   L  ++     LK
Sbjct:    6 SSDNSWIICPKPNPLAALRLFCFPYAGGSSLIFRRWSDYLPFSVEVCTIELPGRGRQIKLPLCNNMDALVDAIASMIFPY--LDKPFAFFGHSMGGLFSFELTRLLRQKYNILPVHLFISGRRAPQI---PPVKPPIHNLPEPAFIEELRHLNGTPPAVLENAELMQLFLPILRADFAVLETYTYTPEP-----PLECPITVFGGLQDSEVDCHELQAWQEQTKTNFNLDMFPGDHFFLHS-AQYGLLTSLAKYLLVEIHQNQTLK 260          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig85.16631.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Thioesterase1.200e-17894.27domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Gramicidin2.760e-5340.23dehydrogenase n=1 Tax=Hapalosiphon sp. MRB220 TaxI... [more]
Surfactin1.660e-5237.50synthase thioesterase subunit n=2 Tax=Thermosporot... [more]
Thioesterase3.200e-5240.25n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=... [more]
Oleoyl-(Acyl-carrier-protein)4.490e-5237.60hydrolase n=1 Tax=Crinalium epipsammum PCC 9333 Ta... [more]
Putative4.490e-5239.85thioesterase n=2 Tax=unclassified Desertifilum Tax... [more]
Putative8.890e-5241.88thioesterase n=1 Tax=Leptolyngbya boryana NIES-213... [more]
thioesterase2.550e-5139.83II family protein n=1 Tax=Fischerella sp. PCC 9605... [more]
Thioesterase3.580e-5140.91n=3 Tax=Nostocales TaxID=1161 RepID=A0A1Z4J274_9CY... [more]
thioesterase1.290e-5037.59II family protein n=1 Tax=Nostoc sp. LEGE 06077 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig85contigE_fasciculatus_S2_contig85:30556..34412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score509.2
Seed ortholog evalue1.1e-141
Seed eggNOG ortholog2880.D8LKB7
Preferred nameOLAH
Model size1274
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016295,GO:0016296,GO:0016297,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047381,GO:0051791,GO:0051792,GO:0071704,GO:0072330,GO:1901576
Exons6
EggNOG free text desc.dodecanoyl-[acyl-carrier-protein] hydrolase activity
EggNOG OGs2RGSQ@2759,COG3208@1
EC3.1.2.21
Cds size792
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig85.16631.1prot_E_fasciculatus_S2_contig85.16631.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig85 31038..34412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842509.1397655-UTR-E_fasciculatus_S2_contig85:30555..310371696842509.1397655-UTR-E_fasciculatus_S2_contig85:30555..31037Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig85 30556..31037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842509.1535487-CDS-E_fasciculatus_S2_contig85:31037..312871696842509.1535487-CDS-E_fasciculatus_S2_contig85:31037..31287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 31038..31287 -
1696842509.164227-CDS-E_fasciculatus_S2_contig85:31713..318681696842509.164227-CDS-E_fasciculatus_S2_contig85:31713..31868Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 31714..31868 -
1696842509.1742785-CDS-E_fasciculatus_S2_contig85:32430..325831696842509.1742785-CDS-E_fasciculatus_S2_contig85:32430..32583Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 32431..32583 -
1696842509.184389-CDS-E_fasciculatus_S2_contig85:33238..332961696842509.184389-CDS-E_fasciculatus_S2_contig85:33238..33296Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 33239..33296 -
1696842509.194651-CDS-E_fasciculatus_S2_contig85:33826..339241696842509.194651-CDS-E_fasciculatus_S2_contig85:33826..33924Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 33827..33924 -
1696842509.206104-CDS-E_fasciculatus_S2_contig85:34334..344121696842509.206104-CDS-E_fasciculatus_S2_contig85:34334..34412Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig85 34335..34412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig85.16631.1

>prot_E_fasciculatus_S2_contig85.16631.1 ID=prot_E_fasciculatus_S2_contig85.16631.1|Name=mRNA_E_fasciculatus_S2_contig85.16631.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=264bp
MSSSALEKWVVCRRVKPDASIRLICAAWAGGSASSFNKWTSKLPEAVELH
ALELPGRMRRSKEDSLTSVPAIVEGVAQALVAMGLLDKPFALFGHSFGSL
VMFELARKLKEDIGKIPVYLIVSGCRPPDMCVGGGRSPPISQLPRDALVD
HLIGLGGMPEELRDQTELVDYFLPPIRADYTAFEGYRYEPRPGDDSRPIT
CPIICLGGEEDGGAPRSDLEHWSSLTAAEFRLRMFGGGHFFLQGQGEQAV
LTFLGDVLTEKLS*
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mRNA from alignment at E_fasciculatus_S2_contig85:30556..34412-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig85.16631.1 ID=mRNA_E_fasciculatus_S2_contig85.16631.1|Name=mRNA_E_fasciculatus_S2_contig85.16631.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3857bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:30556..34412- (Ectocarpus fasciculatus EfasUO2)
ATGAGCTCTTCAGCCCTTGAGAAGTGGGTCGTCTGTCGCCGAGTTAAGCC AGATGCCTCGATACGGCTCATCTGCGCGGTGAGGGGTCGTGGTCGTTGTC ATAGGCGCGTGCCCGAGTGTAGACTAGATCTGTAAGGATGCGCATGTTTT GAAACTTTGTGCACAGCACCCACCTAAATTGCTGTACACATTGTCGAACG ACCAGCGATTCAGCTTCATGCACCCAAGGTATGGAATGCCGTGCTTGGAC CATAGCCACGGGCGCGGTAGTGCAGCTCTCGAAGTCTCAAACAGCAGGCG CGGCGACACGGCCATAATTGCGCCGCACTGCCAATGGCTACCGCCATATT GCGCCGCACCTCCATACCTCCCACCAACTACATACCTGTTCGTCTTACGT AAGGAAGCTAGCGCGTGCAACTCCGTGTGCATATTTCGGGATGGATCTTA GTGCTCTTATTCATTGCTGTTCTGATGTGTGAAGATAGGCGTGGGCCGGT GGCAGCGCGAGCTCGTTCAACAAGTGGACCTCCAAGCTGCCGGAGGCGGT GGAACTACACGCGCTTGAGCTCCCCGGGAGGATGAGGTAGATACACGGCT TCTTTGCGCTTTTCACAACCCAAAGGGATGTCCGCAGAGCAGTTGTGCGG GCCCGTCCCCGATGGATTGTTGGTTTATGAAGAGCGTTCTTTCACGCGCT AGTGTCTTTGGGTTGCACTGGCAACATATGCCTTTCGAGTGCGTGCTTCG CGTTCTATGTACATGTTGCGTTTCTCATCGCGAACTATTCGCGAACTATT CGCGAACACGCAGCGCACGAAGAGAGTGCAGCCGTTGTTGCCCACATTAT TCGTGCAGTTCCGCTATGGGGATGAGTACCGCAATTTTCCGACATGGAAT ATATTCTTGGAACACCACAAGGTTGATCTATCAGTAAGGACATACAATAC GTACTACACATGGACGGGTATGGAGGCGATCCTGTTGTCAATTTGAGTTG CCCGAGCTACTGTAGCTCCGCGACCGTCTAGATTAGAAAGCCTCCTTCGT TTTGCCGCGATGCTTCAACCATGGCTCATCGTGGGTCACCATGTCCTGCA CATTCCACTAACACAGGCGATCCAAGGAGGATAGCCTGACGTCCGTCCCT GCCATCGTTGAAGGGGTTGCTCAGGTGGGTGGGTGGGCAGGAGGCCAAGA GGAGGCCCGGGCGGATTCGTTGGAATGTATTAGCGGAGTACTCGTTCAGC TAGTTTCGTCTTGTTTGTTCGGGCGAGCGATGTAATCAAAGAGGACGGTA GGGGGATAGAAGAGAGGGGCTAGTCGTGAGAGGTATCAGAGACACAAGGC ATATGAGACAGGCCGGGGGGTAAGGGGCGACGAGGGCTTGCGAAGGAGAG ACAGATGGTAGAATTGCGGTGCCCGAAAGACAGAATGTGCGAGAGGCCGG GGATCCACAGAGCCTTGCAAGATCTATGCTGACTGTTTGCGATCAATGCG ATCGGCAATCGCTGTAACAACCGCCTGTTTCGTCGTGTGCATTACCAGTT TTCTCGCGCGAAGCTAGTACTACATGCGGTAGCTTTCAACGGTTACCCCC CCACACACACAACCTATTGAGTCTTCTCCTTGTACTTCAAAAGCAGGACT CTGTCGCCCATCTCATGCGCCCCCACTGTTGGTAGAACTCTCACCCTTTG ACTTAAAAAAGTGTTCGTTTGTTTATTCCGCTGCAAGACCGACGTATTTT CATTGGTCAGCCGTTTAGCGCGGTCGATGCTATTTAAGAACTCACACACC CACACCCACACCCGCACCCACACCCCAAGGCTCTGGTGGCCATGGGGCTG CTCGATAAGCCATTCGCCCTGTTCGGGCACAGCTTCGGGTCTCTCGTGAT GTTCGAGCTTGCCCGAAAGCTTAAGGAAGACATCGGGAAAATACCGGTGT ACCTGATCGTGTCCGGGTGCCGTCCCCCAGATGTAAGTTGCAGCCGTAGT CGAAACGCTGTGTATTCATACGGGTCCCTGAAAGGAAGCTCTTCATACAA AATGTAGATGGGAGCTTGCTCCTGTGACCCCTTATGTTTGCAAAAGTTAA AGTTCAAAGAGAGTAAACGCTCTGCGTCAGCCAAGCTCTGTACCAGCCAG AATTTGGTTCAGCCTGAATTTGGTTCATCACTGGAGAACGAGCTGTTTCT GCCAACACGCAGGGTAGGGGGGAGGAGGGTGTCTCCCTGGCGCATGTCGC CATGTGCTACCATGTATCATCGTATTTTCGGCAGAAAGCTAGCTCGTAGA ATGTTTGTGCCTTTGTTTTGCATGCCTCGCATGATCGCTCTATGAACACA AGCAAGACTCGCCCAAGACTAGTTCGTTTTCCCTTTCGCGTTTCTTCCGC CAGCCTCTTTGGTCGTCGACAACCAATTGCGAACATCGTGGTTCCGTAAC AGAAACTATACTTCTAACAGGCATGCACTATCATCTCCCCCTTCGAACGC TGCTCGACTACCCACGCACGGCGTACGTCCCACGTGCTACTCAGATGTGC GTCGGCGGTGGGCGTTCGCCCCCGATAAGCCAGCTCCCCCGCGACGCATT GGTAGACCACCTCATCGGCCTCGGGGGCATGCCCGAGGAGTTAAGGGACC AGACGGAGCTCGTGGACTACTTTCTTCCCCCGATTCGGGCGGACTATACG TGAGAGAAATTACAGGGCCGAGACCTTCCAATTGATGAGCGCTTGCAATG ACGACAACGGAACTCTTCGCTTGCATGGTGGAACTTAGCCCACAACTTGC GGCCATGCGGGCCGCACGCATGATAAACACTTCCAAATGCTCCCTCTCTC CGTAGGAGACAATGCACACGTTTCCTGCCCCATCGCGACCGTTGATGCAA GTGTTGCAGATTGCCATCGTAGCCTTTGTCCCCGTGTCTGCCACAGGCAT TCTCGTATGCCATTGAGCGAGGAAATCGCGAAAGCGCTCATCACCCATCG TGCGGTAGAATTTCTCAGCCGCCACAGAAACGATTTCATGGAAGCTCAAG GACTTTCCGGCAGAGCGTTCATGCTTCCCCACATCCTTTCTTGCCCTTGT TGTGGACTACGCAACGAAAAACAAGCGCTTTCGAGGGCTACAGGTACGAA CCTCGCCCGGGGGACGACTCTCGGCCAATCACGTGCCCAATCATCTGCCT CGGCGGGGAGGAAGACGGCGGGGCCCCGAGGAGCGACTTGGAGCACTGGT CAAGCCTCACGGCGGCGGAATTCCGCTTGCGAATGTTCGGGGGGGGGCAC TTCTTCTTGCAGGGGCAAGGAGAGCAAGCGGTGTTGACTTTTTTGGGTGA TGTGTTGACTGAAAAACTGAGTTGAAGGGTGGCTTTAAAGAGGACCAGAC CTCCACGAGCTTGTGAGGTGCTTTTTTCGCAATAGTGTTGTCGGGGGGGG TTGCCTTTGACTGTTTTGTGCTGTTAGGCTGAGTTGCTCTTTGTGCTCGT GACAGGTTGCGTTCGAGTGATTCGTTTTGAGTAGGGGGGTTCCTGTTGAA CGGTATTGGTTTCGTCGAGTCAAGCAGCTTAGTCTCGTCCCCCGAGTATA GCACGCACCCTCGTCATGTTGGTGCCGTACGAACCACAGCATCTTGTTGA GAGGAAACGACTAGTTGCAAACCACCACCAGATTGAACAGGTCACGCTGA ACGGCCGTGAGCGCTTCCTCTGTTATGGTTTGACGAGCTGCCTGATCGTG AACCTGTTTACCTGCGCTCACGTGCAATGCCGCCCGTCAAAAACGCCGAC GGTTGGCTCGCTCTACGCTATCCACCGGGAAAAGCTTGATCAAGGGACAT CTTAACC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig85:30556..34412-

>mRNA_E_fasciculatus_S2_contig85.16631.1 ID=mRNA_E_fasciculatus_S2_contig85.16631.1|Name=mRNA_E_fasciculatus_S2_contig85.16631.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=792bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig85:30556..34412- (Ectocarpus fasciculatus EfasUO2)
ATGAGCTCTTCAGCCCTTGAGAAGTGGGTCGTCTGTCGCCGAGTTAAGCC
AGATGCCTCGATACGGCTCATCTGCGCGGCGTGGGCCGGTGGCAGCGCGA
GCTCGTTCAACAAGTGGACCTCCAAGCTGCCGGAGGCGGTGGAACTACAC
GCGCTTGAGCTCCCCGGGAGGATGAGGCGATCCAAGGAGGATAGCCTGAC
GTCCGTCCCTGCCATCGTTGAAGGGGTTGCTCAGGCTCTGGTGGCCATGG
GGCTGCTCGATAAGCCATTCGCCCTGTTCGGGCACAGCTTCGGGTCTCTC
GTGATGTTCGAGCTTGCCCGAAAGCTTAAGGAAGACATCGGGAAAATACC
GGTGTACCTGATCGTGTCCGGGTGCCGTCCCCCAGATATGTGCGTCGGCG
GTGGGCGTTCGCCCCCGATAAGCCAGCTCCCCCGCGACGCATTGGTAGAC
CACCTCATCGGCCTCGGGGGCATGCCCGAGGAGTTAAGGGACCAGACGGA
GCTCGTGGACTACTTTCTTCCCCCGATTCGGGCGGACTATACCGCTTTCG
AGGGCTACAGGTACGAACCTCGCCCGGGGGACGACTCTCGGCCAATCACG
TGCCCAATCATCTGCCTCGGCGGGGAGGAAGACGGCGGGGCCCCGAGGAG
CGACTTGGAGCACTGGTCAAGCCTCACGGCGGCGGAATTCCGCTTGCGAA
TGTTCGGGGGGGGGCACTTCTTCTTGCAGGGGCAAGGAGAGCAAGCGGTG
TTGACTTTTTTGGGTGATGTGTTGACTGAAAAACTGAGTTGA
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