mRNA_E_fasciculatus_S2_contig849.16619.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16619.1
Unique NamemRNA_E_fasciculatus_S2_contig849.16619.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig849.16619.1 vs.
Match: Presumed (helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.760e-37
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 GVWDQRGKAVAPRVVRLGRPSEDAADRVKAVSLEFMVEERVKLHAKSTEARNAETKIRETHMRIDEAGRAVRSGGVGDVAG 243
            GVWDQRG AVAPRVVRLG+PSEDAADRVKAVSLEFMVEERVKLHAKS EAR AETKIRETH RIDEAGRAVRSGGVG+V G
Sbjct:  255 GVWDQRGNAVAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARTAETKIRETHARIDEAGRAVRSGGVGEVGG 335
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig849.16619.1 vs.
Match: AAA_11 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.700e-37
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:    1 GVWDQRGKAVAPRVVRLGRPSEDAADRVKAVSLEFMVEERVKLHAKSTEARNAETKIRETHMRIDEAGRAVRSGGVGDVAG 243
            GVWDQRG A APRVVRLG+PSEDAADRVKAVSLEFMVEERVKLHAKS EARNAETKIRETH RIDEAGRAVRSG VG+V G
Sbjct:  450 GVWDQRGNATAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARNAETKIRETHARIDEAGRAVRSGDVGEVGG 530
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16619.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Presumed1.760e-3791.36helicase required for RNA polymerase II transcript... [more]
AAA_112.700e-3790.12domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:24328..25083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.3
Seed ortholog evalue5e-32
Seed eggNOG ortholog2880.D8LLI3
Model size247
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
Cds size243
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.851569-CDS-E_fasciculatus_S2_contig849:24329..244531696842507.851569-CDS-E_fasciculatus_S2_contig849:24329..24453Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 24330..24453 -
1696842507.8657515-CDS-E_fasciculatus_S2_contig849:24964..250831696842507.8657515-CDS-E_fasciculatus_S2_contig849:24964..25083Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 24965..25083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16619.1prot_E_fasciculatus_S2_contig849.16619.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig849 24330..25083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig849.16619.1

>prot_E_fasciculatus_S2_contig849.16619.1 ID=prot_E_fasciculatus_S2_contig849.16619.1|Name=mRNA_E_fasciculatus_S2_contig849.16619.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
GVWDQRGKAVAPRVVRLGRPSEDAADRVKAVSLEFMVEERVKLHAKSTEA
RNAETKIRETHMRIDEAGRAVRSGGVGDVAG
back to top

mRNA from alignment at E_fasciculatus_S2_contig849:24328..25083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig849.16619.1 ID=mRNA_E_fasciculatus_S2_contig849.16619.1|Name=mRNA_E_fasciculatus_S2_contig849.16619.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=756bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:24328..25083- (Ectocarpus fasciculatus EfasUO2)
GGAGTTTGGGACCAGCGCGGCAAGGCTGTTGCGCCGAGGGTAGTTCGCCT
GGGAAGGCCTTCGGAAGACGCAGCGGATCGTGTCAAGGCTGTGTCGCTTG
AGTTCATGGTAGAAGAAAGGTGACCAGCTGTTGTTGTTGTTGTTGTTGGT
GGTGGCGGTGGTGGTGATAACTTCGGCAACTCAGGGCACAAGCATGACAG
AAACGGGTGATAGGCTCACGGCCGATCTAGTTCGCCAGAGGAGTCGCCAT
ACACCTCAGGCGCACTGCCCCCGTCCCTTCTTTTGTCTCAATACGAGATA
GCCCTAGCTGCCCTGCTGCCTGCCTGCTTCCTTCCCCAACAGCAGATAAG
TCATTCGACGATCCGCATATTGAGAAATGCCTCCTTCGATGGTTCTTTCC
TCTTGCCATCCGCGTCCTCCGGACGCGTGAATGCGCACATCACACGAGCA
TCTGGTTCTGGGTGTCTTCACCGTTCTTGTCCTGAGCAGAGTGACGCGTG
CAGCACACACACGCTAACATCTGGTCTGTTTCTGTGTCCGCACTGTTCTT
GAACCTGAGTAGAGTGACGCTTTGCCACACACGCTTAACATCTGGTCTGC
GTGTCTGCACCGCGTTCTTGTCCTGAGCAGAGTGAAGCTCCACGCCAAGA
GCACCGAGGCAAGAAATGCCGAGACGAAGATCAGAGAAACGCACATGCGG
ATCGACGAGGCTGGACGTGCCGTCAGGAGCGGCGGTGTCGGCGACGTTGC
CGGTGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig849:24328..25083-

>mRNA_E_fasciculatus_S2_contig849.16619.1 ID=mRNA_E_fasciculatus_S2_contig849.16619.1|Name=mRNA_E_fasciculatus_S2_contig849.16619.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:24328..25083- (Ectocarpus fasciculatus EfasUO2)
GGAGTTTGGGACCAGCGCGGCAAGGCTGTTGCGCCGAGGGTAGTTCGCCT
GGGAAGGCCTTCGGAAGACGCAGCGGATCGTGTCAAGGCTGTGTCGCTTG
AGTTCATGGTAGAAGAAAGAGTGAAGCTCCACGCCAAGAGCACCGAGGCA
AGAAATGCCGAGACGAAGATCAGAGAAACGCACATGCGGATCGACGAGGC
TGGACGTGCCGTCAGGAGCGGCGGTGTCGGCGACGTTGCCGGT
back to top