prot_E_fasciculatus_S2_contig849.16619.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16619.1
Unique Nameprot_E_fasciculatus_S2_contig849.16619.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length81
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig849.16619.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.760e-37
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 GVWDQRGKAVAPRVVRLGRPSEDAADRVKAVSLEFMVEERVKLHAKSTEARNAETKIRETHMRIDEAGRAVRSGGVGDVAG 81
            GVWDQRG AVAPRVVRLG+PSEDAADRVKAVSLEFMVEERVKLHAKS EAR AETKIRETH RIDEAGRAVRSGGVG+V G
Sbjct:  255 GVWDQRGNAVAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARTAETKIRETHARIDEAGRAVRSGGVGEVGG 335
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BLAST of mRNA_E_fasciculatus_S2_contig849.16619.1 vs. uniprot
Match: A0A6H5J6B2_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.700e-37
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0 
Query:    1 GVWDQRGKAVAPRVVRLGRPSEDAADRVKAVSLEFMVEERVKLHAKSTEARNAETKIRETHMRIDEAGRAVRSGGVGDVAG 81
            GVWDQRG A APRVVRLG+PSEDAADRVKAVSLEFMVEERVKLHAKS EARNAETKIRETH RIDEAGRAVRSG VG+V G
Sbjct:  450 GVWDQRGNATAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARNAETKIRETHARIDEAGRAVRSGDVGEVGG 530
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLI3_ECTSI1.760e-3791.36Presumed helicase required for RNA polymerase II t... [more]
A0A6H5J6B2_9PHAE2.700e-3790.12AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:24330..25083 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16619.1mRNA_E_fasciculatus_S2_contig849.16619.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig849 24328..25083 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig849.16619.1 ID=prot_E_fasciculatus_S2_contig849.16619.1|Name=mRNA_E_fasciculatus_S2_contig849.16619.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
GVWDQRGKAVAPRVVRLGRPSEDAADRVKAVSLEFMVEERVKLHAKSTEA
RNAETKIRETHMRIDEAGRAVRSGGVGDVAG
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