mRNA_E_fasciculatus_S2_contig8386.16517.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8386.16517.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI) HSP 1 Score: 522 bits (1345), Expect = 1.790e-176 Identity = 408/506 (80.63%), Postives = 416/506 (82.21%), Query Frame = 1
Query: 1 MDGAIQDDELWRRAFSANAGLFFDDQLSDFGPLLTGDDPAAAT-AAAGVADAALGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQPHMRVQIACRPSTLVAXXXXXXXXXPPESENXXXXXXXXXXXXXXXXIGPAPESARSRANLQVTALSSNAAESTTPPLEQQAAAEGPSAEQQQ--GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKVSLSGRLAEAQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRIGPEQRHAEVWRAPDGADGKGKG--VARSVVSPPAPPPTWQSIYGRLHRDVHAPSGAFCPSHMVIGRSFQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRMTEV 1500
MDGA+QDD+LWRRAFS NAGLFFD+Q +DFGPLLTGDD AAA AAAGVAD +GM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PH+RVQIACRPSTLVA XXXXXXXX XXXXXXXXXXX IGPAPESARS+ANL ALS GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDK SLS R AEA RQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWR+GPEQRHAEVWR PD ADGKGK VARS VSPPAPPPTWQSIYGRLH DVHAPSG FCPSHMVIGRS QEGVAVWIAL RRSNGMTGRSVMTQGSTGLR TEV
Sbjct: 1 MDGAMQDDDLWRRAFSTNAGLFFDEQ-ADFGPLLTGDDTAAALIAAAGVADPVVGMPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PHVRVQIACRPSTLVAAXXXXXXXXXXXXXXXXXXXXXXXXXRQQRKIGPAPESARSKANLPA-ALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLSARFAEALRQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGLDSGGAGGGAEAVVGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGKGKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPSHMVIGRSVQEGVAVWIALTRRSNGMTGRSVMTQGSTGLRTTEV 500
BLAST of mRNA_E_fasciculatus_S2_contig8386.16517.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE) HSP 1 Score: 449 bits (1155), Expect = 1.270e-149 Identity = 283/319 (88.71%), Postives = 286/319 (89.66%), Query Frame = 1
Query: 565 GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKVSLSGRLAEAQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRIGPEQRHAEVWRAPDGADGKGK------GVARSVVSPPAPPPTWQSIYGRLHRDVHAPSGAFCPSHMVIGRSFQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRMTEV 1500
GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDK SL RLAEA RQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSR+WRDKCTWDCNWSTLCVSRWR+GPEQRHAEVWR PD ADG GK GVARSV+SPPAPPPTWQSIYGRLHRDVHAPSG FCPSHMVIGRS QEGVAVWIALNRRSNGMTGRSVMTQGSTGLR TEV
Sbjct: 41 GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSHGRDSGGASGAVATAGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPSHMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRTTEV 359
BLAST of mRNA_E_fasciculatus_S2_contig8386.16517.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 137 bits (345), Expect = 7.940e-31 Identity = 145/191 (75.92%), Postives = 154/191 (80.63%), Query Frame = 1
Query: 1 MDGAIQDDELWRRAFSANAGLFFDDQLSDFGPLLTG-DDPAAATAAAGVADAALGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQPHMRVQIACRPSTLVAXXXXXXXXXPPESENXXXXXXXXXXXXXXXXIGPAPESARSRANLQVTALSSNAAESTTPPLEQQAAAEGPSAEQQQGA 570
MDG +QDD+LWRRAFSANAGLF D+Q +DFGPLLTG DDPAA TAAAGVAD +GM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HQPH+RVQIACRPSTLVA XXXXXXX XXXXXXXXXXXX IGPAPESARSR N+ ALSSNAAEST LEQQ AAEGP AE+QQ +
Sbjct: 1 MDGVMQDDDLWRRAFSANAGLFVDEQ-ADFGPLLTGGDDPAAVTAAAGVADPVVGMPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----HQPHVRVQIACRPSTLVATPXXXXXXXXXXXXXXXXXXXXXXXXXQQRRIGPAPESARSRVNMPA-ALSSNAAESTAAALEQQVAAEGPPAEKQQAS 184
BLAST of mRNA_E_fasciculatus_S2_contig8386.16517.1 vs.
Match: BHLH (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.790e-21 Identity = 62/188 (32.98%), Postives = 86/188 (45.74%), Query Frame = 1
Query: 1036 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRIGPEQRHAEVWRAPDGADGKGKGVARSVVSPP----------------------------APPPTWQSIYGRLHRDVHAPSGAFCPSHM----------------VIGRSFQEGVAVWIALNRRSNGMTGRSVMT 1467
+++A VFG +L + FL SLE A + R+WR +C WDC W+ C +RWR+ + R E W+A + + R +P APP +W+ +Y LHR++ P GA C S VIGR+ G VW+AL RRSNGMT RSV+T
Sbjct: 287 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVT 474 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8386.16517.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8386.16517.1 >prot_E_fasciculatus_S2_contig8386.16517.1 ID=prot_E_fasciculatus_S2_contig8386.16517.1|Name=mRNA_E_fasciculatus_S2_contig8386.16517.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=500bp MDGAIQDDELWRRAFSANAGLFFDDQLSDFGPLLTGDDPAAATAAAGVADback to top mRNA from alignment at E_fasciculatus_S2_contig8386:206..3824- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8386.16517.1 ID=mRNA_E_fasciculatus_S2_contig8386.16517.1|Name=mRNA_E_fasciculatus_S2_contig8386.16517.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3619bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8386:206..3824- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8386:206..3824- >mRNA_E_fasciculatus_S2_contig8386.16517.1 ID=mRNA_E_fasciculatus_S2_contig8386.16517.1|Name=mRNA_E_fasciculatus_S2_contig8386.16517.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1500bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8386:206..3824- (Ectocarpus fasciculatus EfasUO2)back to top |